pycom09g13870

GDP-fucose protein O-fucosyltransferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
N/A
Physical Location & Seq
Forward (+)
13045645 .. 13045970
326 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 267 bp
ATGGCTTCATCAAACAAACGCAAAGGCCAATTTGATTATATAGAAACTGTTCTTCCGGCCCTATTAGAGCATCATTATATTTCAATTACACCAGCGATGAGCCAGAGAAGGGATAGGTATTTAAATACGTGTTTTTTTTTTCTCTATGAGTTCCCAATTACATATGAAGAATTGTTACTGTGGATATCTACCACCTTTGTGGTGAAGGCCAGTACATGTGGCCTAAAGCTTTATCATCAAGGTGTAAAAGTGAAGTTTAGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

89

Amino Acids

10.35

Weight (kDa)

8.98

Isoelectric Point (pI)

51.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 1 cut(s) 109
AflIII ACRYGT 2 cut(s) 128, 215
AgsI TTSAA 1 cut(s) 84
AleI CACNNNNGTG 1 cut(s) 197
AluBI AGCT 1 cut(s) 229
AluI AGCT 1 cut(s) 229
AoxI GGCC 4 cut(s) 25, 57, 207, 220
Asp700I GAANNNNTTC 1 cut(s) 48
AspS9I GGNCC 1 cut(s) 58
AsuHPI GGTGA 1 cut(s) 214
BarI GAAGNNNNNNTAC 2 cut(s) 159, 191
BmgT120I GGNCC 1 cut(s) 58
BmsI GCATC 1 cut(s) 79
BsaAI YACGTR 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse1I ACTGG 1 cut(s) 210
BseLI CCNNNNNNNGG 1 cut(s) 109
BseNI ACTGG 1 cut(s) 210
BshFI GGCC 4 cut(s) 27, 59, 209, 222
BsiSI CCGG 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 109
BsnI GGCC 4 cut(s) 27, 59, 209, 222
BspANI GGCC 4 cut(s) 27, 59, 209, 222
BsrI ACTGG 1 cut(s) 210
Bst4CI ACNGT 2 cut(s) 49, 180
BstBAI YACGTR 1 cut(s) 129
BstNSI RCATGY 1 cut(s) 219
BstXI CCANNNNNNTGG 1 cut(s) 199
BsuRI GGCC 4 cut(s) 27, 59, 209, 222
BtgZI GCGATG 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 58
Csp6I GTAC 1 cut(s) 213
CviAII CATG 1 cut(s) 216
CviJI RGCY 7 cut(s) 5, 27, 59, 102, 209, 222, 229
CviKI_1 RGCY 7 cut(s) 5, 27, 59, 102, 209, 222, 229
CviQI GTAC 1 cut(s) 213
DraI TTTAAA 1 cut(s) 123
Eco32I GATATC 1 cut(s) 186
EcoRV GATATC 1 cut(s) 186
FaeI CATG 1 cut(s) 219
FaiI YATR 7 cut(s) 39, 41, 78, 147, 163, 165, 217
FatI CATG 1 cut(s) 215
FauNDI CATATG 1 cut(s) 163
HaeIII GGCC 4 cut(s) 27, 59, 209, 222
HapII CCGG 1 cut(s) 56
Hin1II CATG 1 cut(s) 219
HindIII AAGCTT 1 cut(s) 227
HpaII CCGG 1 cut(s) 56
HphI GGTGA 1 cut(s) 214
HpyAV CCTTC 2 cut(s) 102, 199
HpyCH4III ACNGT 2 cut(s) 49, 180
HpyCH4IV ACGT 1 cut(s) 128
HpySE526I ACGT 1 cut(s) 128
Hsp92II CATG 1 cut(s) 219
LpnPI CCDG 4 cut(s) 69, 105, 116, 223
LweI GCATC 1 cut(s) 79
MaeII ACGT 1 cut(s) 128
MaeIII GTNAC 1 cut(s) 174
MboII GAAGA 2 cut(s) 44, 179
MluCI AATT 4 cut(s) 29, 84, 156, 170
MroXI GAANNNNTTC 1 cut(s) 48
MseI TTAA 1 cut(s) 122
MslI CAYNNNNRTG 2 cut(s) 197, 240
MspI CCGG 1 cut(s) 56
NdeI CATATG 1 cut(s) 163
NlaIII CATG 1 cut(s) 219
NspI RCATGY 1 cut(s) 219
OliI CACNNNNGTG 1 cut(s) 197
PciI ACATGT 1 cut(s) 215
PdmI GAANNNNTTC 1 cut(s) 48
Ppu21I YACGTR 1 cut(s) 129
PscI ACATGT 1 cut(s) 215
PspPI GGNCC 1 cut(s) 58
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
RseI CAYNNNNRTG 2 cut(s) 197, 240
SaqAI TTAA 1 cut(s) 122
Sau96I GGNCC 1 cut(s) 58
SetI ASST 5 cut(s) 119, 131, 197, 231, 244
SfaNI GCATC 1 cut(s) 79
SgeI CNNG 7 cut(s) 68, 104, 115, 141, 222, 228, 251
SmiI ATTTAAAT 1 cut(s) 123
SmiMI CAYNNNNRTG 2 cut(s) 197, 240
Sse9I AATT 4 cut(s) 29, 84, 156, 170
SwaI ATTTAAAT 1 cut(s) 123
TaaI ACNGT 2 cut(s) 49, 180
TaiI ACGT 1 cut(s) 131
TasI AATT 4 cut(s) 29, 84, 156, 170
TatI WGTACW 1 cut(s) 212
Tru1I TTAA 1 cut(s) 122
Tru9I TTAA 1 cut(s) 122
TspDTI ATGAA 1 cut(s) 180
XceI RCATGY 1 cut(s) 219
XmnI GAANNNNTTC 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.