pycom09g14160

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
N/A
Physical Location & Seq
Reverse (-)
13560039 .. 13560777
739 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 291 bp
ATGTTGTTGTTGTGCAGCTGCAAATGTTTCTTGGTCTGTGAATGCAGCAGCAGAAGCGAAGAGGAAGAAAGGAGAGTGAAAATGTTGTGTAAAAAGAGTGTGTGCAGAAGTGCCATTGAGGAGGAGGAGGACAGTGGATCGGTGCTTGTGTATCTCAATGTATACGATCTCTCACCTTTTAATGGCTACGCTTATTGGCTTGGCCTTGGAGTTTACCATTCTGGTGTACAAGTGCATGGTGTGAAGCATGCATTTGGACCTCACGAGTATCCAAGATCTGGAATTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

97

Amino Acids

10.87

Weight (kDa)

6.05

Isoelectric Point (pI)

81.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 50 - 96 2.8e-11 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 278
AccI GTMKAC 1 cut(s) 162
AclWI GGATC 1 cut(s) 145
AcsI RAATTY 1 cut(s) 282
AfaI GTAC 1 cut(s) 228
AfiI CCNNNNNNNGG 2 cut(s) 182, 278
AluBI AGCT 1 cut(s) 18
AluI AGCT 1 cut(s) 18
AlwI GGATC 1 cut(s) 145
AoxI GGCC 1 cut(s) 202
ApeKI GCWGC 4 cut(s) 15, 18, 45, 48
ApoI RAATTY 1 cut(s) 282
AspS9I GGNCC 1 cut(s) 257
AsuHPI GGTGA 1 cut(s) 165
AvaII GGWCC 1 cut(s) 257
BauI CACGAG 1 cut(s) 263
BbvI GCAGC 4 cut(s) 5, 27, 57, 60
BciVI GTATCC 1 cut(s) 279
BfuI GTATCC 1 cut(s) 279
BglII AGATCT 1 cut(s) 275
BisI GCNGC 4 cut(s) 16, 19, 46, 49
BlsI GCNGC 4 cut(s) 17, 20, 47, 50
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 205
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 278
BseDI CCNNGG 1 cut(s) 205
BseLI CCNNNNNNNGG 2 cut(s) 182, 278
BseRI GAGGAG 3 cut(s) 134, 137, 140
BseXI GCAGC 4 cut(s) 5, 27, 57, 60
BsgI GTGCAG 2 cut(s) 34, 124
BshFI GGCC 1 cut(s) 204
BslI CCNNNNNNNGG 2 cut(s) 182, 278
BsmI GAATGC 1 cut(s) 47
BsnI GGCC 1 cut(s) 204
Bsp1407I TGTACA 1 cut(s) 226
Bsp143I GATC 3 cut(s) 137, 166, 275
BspANI GGCC 1 cut(s) 204
BspPI GGATC 1 cut(s) 145
BsrGI TGTACA 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 3 cut(s) 137, 166, 275
BssNAI GTATAC 1 cut(s) 163
BssSI CACGAG 1 cut(s) 263
BssT1I CCWWGG 1 cut(s) 205
Bst1107I GTATAC 1 cut(s) 163
Bst2BI CACGAG 1 cut(s) 263
Bst4CI ACNGT 1 cut(s) 134
Bst6I CTCTTC 1 cut(s) 54
BstAUI TGTACA 1 cut(s) 226
BstC8I GCNNGC 1 cut(s) 249
BstKTI GATC 3 cut(s) 140, 169, 278
BstMBI GATC 3 cut(s) 137, 166, 275
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstNSI RCATGY 1 cut(s) 251
BstV1I GCAGC 4 cut(s) 5, 27, 57, 60
BstX2I RGATCY 1 cut(s) 275
BstYI RGATCY 1 cut(s) 275
BstZ17I GTATAC 1 cut(s) 163
BsuI GTATCC 1 cut(s) 279
BsuRI GGCC 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 249
Cfr13I GGNCC 1 cut(s) 257
Csp6I GTAC 1 cut(s) 227
CviAII CATG 2 cut(s) 236, 248
CviJI RGCY 4 cut(s) 18, 186, 199, 204
CviKI_1 RGCY 4 cut(s) 18, 186, 199, 204
CviQI GTAC 1 cut(s) 227
DpnI GATC 3 cut(s) 139, 168, 277
DpnII GATC 3 cut(s) 137, 166, 275
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 257
EcoT14I CCWWGG 1 cut(s) 205
EcoT22I ATGCAT 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 205
FaeI CATG 2 cut(s) 239, 251
FaiI YATR 3 cut(s) 163, 237, 249
FatI CATG 2 cut(s) 235, 247
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 4 cut(s) 16, 19, 46, 49
Fsp4HI GCNGC 4 cut(s) 16, 19, 46, 49
GluI GCNGC 4 cut(s) 16, 19, 46, 49
HaeIII GGCC 1 cut(s) 204
Hin1II CATG 2 cut(s) 239, 251
HphI GGTGA 1 cut(s) 165
Hpy166II GTNNAC 3 cut(s) 163, 214, 227
Hpy188III TCNNGA 2 cut(s) 263, 279
Hpy8I GTNNAC 3 cut(s) 163, 214, 227
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4V TGCA 6 cut(s) 15, 21, 45, 105, 235, 251
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
Hsp92II CATG 2 cut(s) 239, 251
Kzo9I GATC 3 cut(s) 137, 166, 275
LpnPI CCDG 2 cut(s) 207, 264
Lsp1109I GCAGC 4 cut(s) 5, 27, 57, 60
MalI GATC 3 cut(s) 139, 168, 277
MboI GATC 3 cut(s) 137, 166, 275
MboII GAAGA 2 cut(s) 71, 77
MflI RGATCY 1 cut(s) 275
MluCI AATT 1 cut(s) 282
MnlI CCTC 6 cut(s) 55, 112, 115, 118, 121, 270
Mph1103I ATGCAT 1 cut(s) 253
MseI TTAA 2 cut(s) 180, 289
MslI CAYNNNNRTG 1 cut(s) 222
MspA1I CMGCKG 1 cut(s) 18
Mva1269I GAATGC 1 cut(s) 47
MwoI GCNNNNNNNGC 1 cut(s) 54
NdeII GATC 3 cut(s) 137, 166, 275
NlaIII CATG 2 cut(s) 239, 251
NsiI ATGCAT 1 cut(s) 253
NspI RCATGY 1 cut(s) 251
PaeI GCATGC 1 cut(s) 251
PctI GAATGC 1 cut(s) 47
PflMI CCANNNNNTGG 1 cut(s) 278
PkrI GCNGC 4 cut(s) 17, 20, 47, 50
PspPI GGNCC 1 cut(s) 257
PsuI RGATCY 1 cut(s) 275
PvuII CAGCTG 1 cut(s) 18
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
RseI CAYNNNNRTG 1 cut(s) 222
SaqAI TTAA 2 cut(s) 180, 289
SatI GCNGC 4 cut(s) 16, 19, 46, 49
Sau3AI GATC 3 cut(s) 137, 166, 275
Sau96I GGNCC 1 cut(s) 257
SetI ASST 3 cut(s) 20, 178, 262
SinI GGWCC 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 222
SphI GCATGC 1 cut(s) 251
Sse9I AATT 1 cut(s) 282
StyI CCWWGG 1 cut(s) 205
TaaI ACNGT 1 cut(s) 134
TasI AATT 1 cut(s) 282
TatI WGTACW 1 cut(s) 226
Tru1I TTAA 2 cut(s) 180, 289
Tru9I TTAA 2 cut(s) 180, 289
TscAI CASTG 1 cut(s) 139
TseI GCWGC 4 cut(s) 15, 18, 45, 48
TspRI CASTG 1 cut(s) 139
Van91I CCANNNNNTGG 1 cut(s) 278
VpaK11BI GGWCC 1 cut(s) 257
XapI RAATTY 1 cut(s) 282
XceI RCATGY 1 cut(s) 251
XmiI GTMKAC 1 cut(s) 162
Zsp2I ATGCAT 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.