Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

14903014 .. 14903289

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGCTGATCAGCCAGTACAACGAGACCATGGCACGTCTGAAAGCCGAGGGAAGGGCACATCCAGTGGAGGGGGAGGCAAGCGTGCTTCTATGGAGGCGGCAATGGGAACGACAACAATAAATAGTAATGCAAGTAGTAACGTAGTAGGTTCTGGTGGTGGTGGTGGTGCAGCTCCATGTGGGGCGTGCAAGTCTTTGAGGAGGAAGTGCATATTCGCACCCCATTTCGGTTCAGACCAAGGAGCTGCACACTTTGCGGTGGTGCACAAGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0023052 GO:0031347 GO:0032101 GO:0032870 GO:0042221 GO:0043900 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080134 GO:1900150 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

92

Amino Acids

8.97

Weight (kDa)

9.65

Isoelectric Point (pI)

41.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	98, 257
AdeI	CACNNNGTG	1 cut(s)	271
AfaI	GTAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	3 cut(s)	52, 69, 227
AjiI	CACGTC	1 cut(s)	36
AluBI	AGCT	2 cut(s)	173, 245
AluI	AGCT	2 cut(s)	173, 245
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	1 cut(s)	18
Alw44I	GTGCAC	1 cut(s)	263
ApaLI	GTGCAC	1 cut(s)	263
ApeKI	GCWGC	2 cut(s)	170, 245
BaeGI	GKGCMC	2 cut(s)	59, 267
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	2 cut(s)	182, 232
BclI	TGATCA	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	18
BisI	GCNGC	3 cut(s)	99, 171, 246
BlsI	GCNGC	3 cut(s)	100, 172, 247
BmgBI	CACGTC	1 cut(s)	36
BsaI	GGTCTC	1 cut(s)	18
BsaJI	CCNNGG	3 cut(s)	28, 46, 238
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 69, 227
Bse1I	ACTGG	2 cut(s)	14, 63
Bse3DI	GCAATG	1 cut(s)	108
BseDI	CCNNGG	3 cut(s)	28, 46, 238
BseGI	GGATG	1 cut(s)	59
BseLI	CCNNNNNNNGG	3 cut(s)	52, 69, 227
BseMI	GCAATG	1 cut(s)	108
BseNI	ACTGG	2 cut(s)	14, 63
BseRI	GAGGAG	1 cut(s)	214
BseSI	GKGCMC	2 cut(s)	59, 267
BseXI	GCAGC	2 cut(s)	182, 232
BsgI	GTGCAG	2 cut(s)	189, 231
BsiHKAI	GWGCWC	1 cut(s)	267
BslI	CCNNNNNNNGG	3 cut(s)	52, 69, 227
BsmAI	GTCTC	1 cut(s)	18
Bso31I	GGTCTC	1 cut(s)	18
Bsp1286I	GDGCHC	2 cut(s)	59, 267
Bsp143I	GATC	1 cut(s)	7
Bsp19I	CCATGG	1 cut(s)	28
BspACI	CCGC	2 cut(s)	98, 257
BspTNI	GGTCTC	1 cut(s)	18
BsrDI	GCAATG	1 cut(s)	108
BsrI	ACTGG	2 cut(s)	14, 63
BssECI	CCNNGG	3 cut(s)	28, 46, 238
BssMI	GATC	1 cut(s)	7
BssT1I	CCWWGG	2 cut(s)	28, 238
BstAPI	GCANNNNNTGC	1 cut(s)	254
BstC8I	GCNNGC	3 cut(s)	80, 84, 187
BstDSI	CCRYGG	1 cut(s)	28
BstF5I	GGATG	1 cut(s)	59
BstKTI	GATC	1 cut(s)	10
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstSLI	GKGCMC	2 cut(s)	59, 267
BstV1I	GCAGC	2 cut(s)	182, 232
BtgI	CCRYGG	1 cut(s)	28
BtrI	CACGTC	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	59
BtsIMutI	CAGTG	1 cut(s)	70
Cac8I	GCNNGC	3 cut(s)	80, 84, 187
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	2 cut(s)	29, 177
CviJI	RGCY	5 cut(s)	5, 13, 45, 173, 245
CviKI_1	RGCY	5 cut(s)	5, 13, 45, 173, 245
CviQI	GTAC	1 cut(s)	17
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
DraIII	CACNNNGTG	1 cut(s)	271
Eco130I	CCWWGG	2 cut(s)	28, 238
Eco31I	GGTCTC	1 cut(s)	18
EcoT14I	CCWWGG	2 cut(s)	28, 238
ErhI	CCWWGG	2 cut(s)	28, 238
FaeI	CATG	2 cut(s)	32, 180
FaiI	YATR	4 cut(s)	30, 92, 178, 212
FatI	CATG	2 cut(s)	28, 176
FbaI	TGATCA	1 cut(s)	7
Fnu4HI	GCNGC	3 cut(s)	99, 171, 246
FokI	GGATG	1 cut(s)	46
Fsp4HI	GCNGC	3 cut(s)	99, 171, 246
GluI	GCNGC	3 cut(s)	99, 171, 246
Hin1II	CATG	2 cut(s)	32, 180
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	2 cut(s)	40, 235
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	1 cut(s)	46
HpyCH4IV	ACGT	2 cut(s)	35, 141
HpyCH4V	TGCA	6 cut(s)	131, 170, 189, 210, 248, 265
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpySE526I	ACGT	2 cut(s)	35, 141
Hsp92II	CATG	2 cut(s)	32, 180
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	7
LmnI	GCTCC	2 cut(s)	178, 242
LpnPI	CCDG	3 cut(s)	27, 76, 138
Lsp1109I	GCAGC	2 cut(s)	182, 232
MaeII	ACGT	2 cut(s)	35, 141
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MhlI	GDGCHC	2 cut(s)	59, 267
MnlI	CCTC	6 cut(s)	41, 62, 68, 88, 192, 195
MwoI	GCNNNNNNNGC	1 cut(s)	254
NcoI	CCATGG	1 cut(s)	28
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	2 cut(s)	32, 180
NmeAIII	GCCGAG	1 cut(s)	71
PkrI	GCNGC	3 cut(s)	100, 172, 247
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
SatI	GCNGC	3 cut(s)	99, 171, 246
Sau3AI	GATC	1 cut(s)	7
SduI	GDGCHC	2 cut(s)	59, 267
SetI	ASST	6 cut(s)	38, 144, 151, 175, 247, 273
SsiI	CCGC	2 cut(s)	98, 257
StyI	CCWWGG	2 cut(s)	28, 238
TaiI	ACGT	2 cut(s)	38, 144
TatI	WGTACW	1 cut(s)	16
TauI	GCSGC	1 cut(s)	101
TscAI	CASTG	1 cut(s)	70
TseI	GCWGC	2 cut(s)	170, 245
TspRI	CASTG	1 cut(s)	70
VneI	GTGCAC	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.