Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

14992037 .. 14992429

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTCGAAAGGGTCGAGGGAAGTGAAGCACTCGGCCGACGCGGATCTTCTATCGATGAAGCACCGGCCAAACAAGTTCAAGAACCTAGCGACGTCGTTCGACCGCGAGCTCGAGAGCCTCTTCAAGTTCAACTTCCTGCCGTCGTCGGCGGGGATTCGATCGATGGCATTGCAGTCGACCGAGATAGCCTTCGTCAAAAAGTTGCCGTCCCGGGTCGAATCTTTCTTCCTATATTTTGTGAAAATGGGTTTTACTGTTTTCTTGTGGAAATTGAGTTCAATTTTGTGTTTTTGGAATACCATTTTGGGATTTAGGCTGATTGTAAAATGGGTTTTCCAAAGTTGTATCAACGGGGAAAAGATTCGAGGTTTAAGGATGTCAAAAAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006664 GO:0006725 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008610 GO:0009058 GO:0009247 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009698 GO:0009699 GO:0009707 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009808 GO:0009809 GO:0009867 GO:0009941 GO:0009987 GO:0010033 GO:0010109 GO:0016020 GO:0016053 GO:0016740 GO:0016757 GO:0016758 GO:0019222 GO:0019374 GO:0019375 GO:0019438 GO:0019748 GO:0019752 GO:0019867 GO:0023052 GO:0031090 GO:0031323 GO:0031407 GO:0031408 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032787 GO:0032870 GO:0035250 GO:0042170 GO:0042221 GO:0042548 GO:0042550 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043467 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0046467 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0072330 GO:0098588 GO:0098805 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1901701 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko01100 map00561 map01100

Pfam Domains

Protein Families

Glyco_trans_1_4 Glycos_transf_1

Protein Analysis

131

Amino Acids

15.1

Weight (kDa)

10.29

Isoelectric Point (pI)

53.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	95
AccI	GTMKAC	1 cut(s)	176
AccII	CGCG	2 cut(s)	41, 105
AciI	CCGC	3 cut(s)	41, 103, 149
AclWI	GGATC	1 cut(s)	51
AcoI	YGGCCR	2 cut(s)	33, 65
AcyI	GRCGYC	1 cut(s)	92
AgsI	TTSAA	4 cut(s)	79, 124, 130, 279
AjuI	GAANNNNNNNTTGG	2 cut(s)	287, 319
AloI	GAACNNNNNNTCC	2 cut(s)	259, 291
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
Alw21I	GWGCWC	1 cut(s)	111
AlwI	GGATC	1 cut(s)	51
Ama87I	CYCGRG	2 cut(s)	110, 210
AoxI	GGCC	2 cut(s)	33, 65
Asp700I	GAANNNNTTC	1 cut(s)	360
AsuC2I	CCSGG	2 cut(s)	211, 212
AvaI	CYCGRG	2 cut(s)	110, 210
BanII	GRGCYC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	111
BccI	CCATC	1 cut(s)	157
BceAI	ACGGC	2 cut(s)	124, 190
BcgI	CGANNNNNNTGC	4 cut(s)	151, 156, 185, 190
BcnI	CCSGG	2 cut(s)	211, 212
BfaI	CTAG	1 cut(s)	86
Bme1390I	CCNGG	2 cut(s)	211, 212
BmeT110I	CYCGRG	2 cut(s)	110, 210
BmrFI	CCNGG	2 cut(s)	211, 212
BpuMI	CCSGG	2 cut(s)	211, 212
Bsa29I	ATCGAT	2 cut(s)	53, 161
BsaHI	GRCGYC	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	210
Bse118I	RCCGGY	1 cut(s)	63
Bse3DI	GCAATG	1 cut(s)	167
BseCI	ATCGAT	2 cut(s)	53, 161
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	1 cut(s)	381
BseMI	GCAATG	1 cut(s)	167
BseX3I	CGGCCG	1 cut(s)	33
Bsh1236I	CGCG	2 cut(s)	41, 105
Bsh1285I	CGRYCG	4 cut(s)	36, 103, 161, 180
BshFI	GGCC	2 cut(s)	35, 67
BshVI	ATCGAT	2 cut(s)	53, 161
BsiEI	CGRYCG	4 cut(s)	36, 103, 161, 180
BsiHKAI	GWGCWC	1 cut(s)	111
BsiHKCI	CYCGRG	2 cut(s)	110, 210
BsiSI	CCGG	2 cut(s)	64, 211
BslFI	GGGAC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	2 cut(s)	35, 67
BsoBI	CYCGRG	2 cut(s)	110, 210
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	43, 158
BspACI	CCGC	3 cut(s)	41, 103, 149
BspANI	GGCC	2 cut(s)	35, 67
BspDI	ATCGAT	2 cut(s)	53, 161
BspFNI	CGCG	2 cut(s)	41, 105
BspPI	GGATC	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	167
BsrFI	RCCGGY	1 cut(s)	63
BssAI	RCCGGY	1 cut(s)	63
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	2 cut(s)	43, 158
BssNI	GRCGYC	1 cut(s)	92
Bst4CI	ACNGT	1 cut(s)	256
Bst6I	CTCTTC	1 cut(s)	125
BstACI	GRCGYC	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	107
BstF5I	GGATG	1 cut(s)	381
BstFNI	CGCG	2 cut(s)	41, 105
BstKTI	GATC	2 cut(s)	46, 161
BstMBI	GATC	2 cut(s)	43, 158
BstMCI	CGRYCG	4 cut(s)	36, 103, 161, 180
BstSCI	CCNGG	2 cut(s)	209, 210
BstUI	CGCG	2 cut(s)	41, 105
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BstZI	CGGCCG	1 cut(s)	33
Bsu15I	ATCGAT	2 cut(s)	53, 161
BsuRI	GGCC	2 cut(s)	35, 67
BsuTUI	ATCGAT	2 cut(s)	53, 161
BtsCI	GGATG	1 cut(s)	381
Cac8I	GCNNGC	1 cut(s)	107
Cfr10I	RCCGGY	1 cut(s)	63
Cfr9I	CCCGGG	1 cut(s)	210
ClaI	ATCGAT	2 cut(s)	53, 161
CseI	GACGC	1 cut(s)	47
CviJI	RGCY	6 cut(s)	35, 67, 109, 117, 188, 316
CviKI_1	RGCY	6 cut(s)	35, 67, 109, 117, 188, 316
DpnI	GATC	2 cut(s)	45, 160
DpnII	GATC	2 cut(s)	43, 158
EaeI	YGGCCR	2 cut(s)	33, 65
EagI	CGGCCG	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Ecl136II	GAGCTC	1 cut(s)	109
EclXI	CGGCCG	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	111
Eco52I	CGGCCG	1 cut(s)	33
Eco53kI	GAGCTC	1 cut(s)	109
Eco88I	CYCGRG	2 cut(s)	110, 210
EcoICRI	GAGCTC	1 cut(s)	109
EcoT38I	GRGCYC	1 cut(s)	111
FaiI	YATR	1 cut(s)	232
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FaqI	GGGAC	1 cut(s)	193
FauI	CCCGC	1 cut(s)	142
FblI	GTMKAC	1 cut(s)	176
FokI	GGATG	1 cut(s)	388
FriOI	GRGCYC	1 cut(s)	111
FspBI	CTAG	1 cut(s)	86
HaeIII	GGCC	2 cut(s)	35, 67
HapII	CCGG	2 cut(s)	64, 211
HgaI	GACGC	1 cut(s)	47
Hin1I	GRCGYC	1 cut(s)	92
HincII	GTYRAC	1 cut(s)	177
HindII	GTYRAC	1 cut(s)	177
HinfI	GANTC	3 cut(s)	154, 218, 361
HpaII	CCGG	2 cut(s)	64, 211
Hpy166II	GTNNAC	1 cut(s)	177
Hpy188III	TCNNGA	2 cut(s)	79, 112
Hpy8I	GTNNAC	1 cut(s)	177
Hpy99I	CGWCG	5 cut(s)	41, 94, 97, 145, 148
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	1 cut(s)	172
HpySE526I	ACGT	1 cut(s)	92
Hsp92I	GRCGYC	1 cut(s)	92
Kzo9I	GATC	2 cut(s)	43, 158
LpnPI	CCDG	3 cut(s)	77, 149, 224
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	1 cut(s)	92
MalI	GATC	2 cut(s)	45, 160
MboI	GATC	2 cut(s)	43, 158
MboII	GAAGA	3 cut(s)	38, 112, 217
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	2 cut(s)	269, 279
MnlI	CCTC	3 cut(s)	9, 128, 359
MroXI	GAANNNNTTC	1 cut(s)	360
MseI	TTAA	1 cut(s)	371
MspI	CCGG	2 cut(s)	64, 211
MspR9I	CCNGG	2 cut(s)	211, 212
MvnI	CGCG	2 cut(s)	41, 105
NciI	CCSGG	2 cut(s)	211, 212
NdeII	GATC	2 cut(s)	43, 158
NmeAIII	GCCGAG	1 cut(s)	11
PaeR7I	CTCGAG	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PdmI	GAANNNNTTC	1 cut(s)	360
PfeI	GAWTC	3 cut(s)	154, 218, 361
Ple19I	CGATCG	1 cut(s)	161
Psp124BI	GAGCTC	1 cut(s)	111
PsuI	RGATCY	1 cut(s)	43
PvuI	CGATCG	1 cut(s)	161
SacI	GAGCTC	1 cut(s)	111
SalI	GTCGAC	1 cut(s)	175
SaqAI	TTAA	1 cut(s)	371
Sau3AI	GATC	2 cut(s)	43, 158
ScrFI	CCNGG	2 cut(s)	211, 212
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	4 cut(s)	87, 95, 111, 370
Sfr274I	CTCGAG	1 cut(s)	110
SlaI	CTCGAG	1 cut(s)	110
SmaI	CCCGGG	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	2 cut(s)	269, 279
SsiI	CCGC	3 cut(s)	41, 103, 149
SspMI	CTAG	1 cut(s)	86
SstI	GAGCTC	1 cut(s)	111
StyD4I	CCNGG	2 cut(s)	209, 210
TaaI	ACNGT	1 cut(s)	256
TaiI	ACGT	1 cut(s)	95
TaqII	GACCGA	1 cut(s)	194
TasI	AATT	2 cut(s)	269, 279
TfiI	GAWTC	3 cut(s)	154, 218, 361
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TspDTI	ATGAA	1 cut(s)	71
TspMI	CCCGGG	1 cut(s)	210
XhoI	CTCGAG	1 cut(s)	110
XmaI	CCCGGG	1 cut(s)	210
XmiI	GTMKAC	1 cut(s)	176
XmnI	GAANNNNTTC	1 cut(s)	360
XspI	CTAG	1 cut(s)	86
ZraI	GACGTC	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.