pycom09g15260

Belongs to the peroxisomal membrane protein PXMP2 4 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
N/A
Physical Location & Seq
Forward (+)
15140269 .. 15141932
1664 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 297 bp
ATGAATGCTCTTGGCGGTGGCGGCTATGGCGGCCTCTGGTGTTGGAACTCCTCATTCCCCAGAAAACCCAAGCAGCCAAGCAAACGCCCATTCGATTCCAAATCCCAGTCCTCCTCCAATTCCAATTCTGTGGACGCAACCGGAAGAGCCCGTCACTGGTTCCCCTTAAAGCAAGCTGCCACGGCTGGCTCACTGGCTCTGACGGGAGATACAATTTCTCAGCTCACACAGCGCTGGAGAAAAGCAGAGGCGGAAAACCAACAGGTTTATAAAACGTGCTCTCCTCTCAGACCATGA

Protein Analysis

99

Amino Acids

10.74

Weight (kDa)

10.29

Isoelectric Point (pI)

64.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 270
AciI CCGC 4 cut(s) 15, 21, 30, 251
AfeI AGCGCT 1 cut(s) 233
AfiI CCNNNNNNNGG 1 cut(s) 156
AluBI AGCT 2 cut(s) 176, 223
AluI AGCT 2 cut(s) 176, 223
Alw21I GWGCWC 1 cut(s) 281
Aor51HI AGCGCT 1 cut(s) 233
AoxI GGCC 1 cut(s) 31
ApeKI GCWGC 2 cut(s) 73, 176
AspLEI GCGC 1 cut(s) 234
BanII GRGCYC 1 cut(s) 151
Bbv12I GWGCWC 1 cut(s) 281
BbvI GCAGC 2 cut(s) 85, 163
BceAI ACGGC 1 cut(s) 198
BfoI RGCGCY 1 cut(s) 235
BisI GCNGC 4 cut(s) 22, 31, 74, 177
BlsI GCNGC 4 cut(s) 23, 32, 75, 178
BmiI GGNNCC 1 cut(s) 161
BmrI ACTGGG 1 cut(s) 100
BmuI ACTGGG 1 cut(s) 100
BpmI CTGGAG 1 cut(s) 256
BsaJI CCNNGG 1 cut(s) 180
BsaWI WCCGGW 1 cut(s) 140
BsaXI ACNNNNNCTCC 2 cut(s) 265, 295
Bsc4I CCNNNNNNNGG 1 cut(s) 156
Bse1I ACTGG 3 cut(s) 106, 161, 198
BseDI CCNNGG 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 156
BseMII CTCAG 1 cut(s) 233
BseNI ACTGG 3 cut(s) 106, 161, 198
BseRI GAGGAG 3 cut(s) 40, 103, 273
BseXI GCAGC 2 cut(s) 85, 163
BshFI GGCC 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 281
BsiSI CCGG 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 156
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 33
Bsp1286I GDGCHC 2 cut(s) 151, 281
BspACI CCGC 4 cut(s) 15, 21, 30, 251
BspANI GGCC 1 cut(s) 33
BspCNI CTCAG 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 161
BspQI GCTCTTC 1 cut(s) 139
BsrI ACTGG 3 cut(s) 106, 161, 198
BssECI CCNNGG 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 139
BstC8I GCNNGC 2 cut(s) 174, 187
BstDEI CTNAG 2 cut(s) 219, 287
BstDSI CCRYGG 1 cut(s) 180
BstH2I RGCGCY 1 cut(s) 235
BstHHI GCGC 1 cut(s) 234
BstMWI GCNNNNNNNGC 5 cut(s) 21, 27, 30, 182, 229
BstV1I GCAGC 2 cut(s) 85, 163
BstXI CCANNNNNNTGG 1 cut(s) 130
BsuRI GGCC 1 cut(s) 33
BtgI CCRYGG 1 cut(s) 180
BtsIMutI CAGTG 2 cut(s) 154, 191
Cac8I GCNNGC 2 cut(s) 174, 187
CfoI GCGC 1 cut(s) 234
CseI GACGC 1 cut(s) 143
CviAII CATG 1 cut(s) 294
CviJI RGCY 9 cut(s) 24, 33, 76, 149, 176, 185, 189, 197, 223
CviKI_1 RGCY 9 cut(s) 24, 33, 76, 149, 176, 185, 189, 197, 223
DdeI CTNAG 2 cut(s) 219, 287
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
EciI GGCGGA 1 cut(s) 266
Eco24I GRGCYC 1 cut(s) 151
Eco47III AGCGCT 1 cut(s) 233
EcoT38I GRGCYC 1 cut(s) 151
FaeI CATG 1 cut(s) 297
FaiI YATR 3 cut(s) 27, 270, 295
FatI CATG 1 cut(s) 293
Fnu4HI GCNGC 4 cut(s) 22, 31, 74, 177
FriOI GRGCYC 1 cut(s) 151
Fsp4HI GCNGC 4 cut(s) 22, 31, 74, 177
GlaI GCGC 1 cut(s) 233
GluI GCNGC 4 cut(s) 22, 31, 74, 177
GsuI CTGGAG 1 cut(s) 256
HaeII RGCGCY 1 cut(s) 235
HaeIII GGCC 1 cut(s) 33
HapII CCGG 1 cut(s) 141
HgaI GACGC 1 cut(s) 143
HhaI GCGC 1 cut(s) 234
Hin1II CATG 1 cut(s) 297
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HinfI GANTC 1 cut(s) 95
HpaII CCGG 1 cut(s) 141
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 2 cut(s) 201, 290
Hpy8I GTNNAC 1 cut(s) 133
HpyCH4IV ACGT 1 cut(s) 275
HpyF10VI GCNNNNNNNGC 5 cut(s) 21, 27, 30, 182, 229
HpyF3I CTNAG 2 cut(s) 219, 287
HpySE526I ACGT 1 cut(s) 275
Hsp92II CATG 1 cut(s) 297
HspAI GCGC 1 cut(s) 232
LguI GCTCTTC 1 cut(s) 139
LpnPI CCDG 9 cut(s) 22, 73, 119, 142, 154, 171, 179, 220, 248
Lsp1109I GCAGC 2 cut(s) 85, 163
MaeII ACGT 1 cut(s) 275
MaeIII GTNAC 1 cut(s) 152
MboII GAAGA 1 cut(s) 156
MhlI GDGCHC 2 cut(s) 151, 281
MluCI AATT 3 cut(s) 118, 124, 213
MmeI TCCRAC 1 cut(s) 23
MnlI CCTC 6 cut(s) 44, 61, 121, 124, 241, 294
MseI TTAA 1 cut(s) 167
MspI CCGG 1 cut(s) 141
Mva1269I GAATGC 1 cut(s) 10
MwoI GCNNNNNNNGC 5 cut(s) 21, 27, 30, 182, 229
NlaIII CATG 1 cut(s) 297
NlaIV GGNNCC 1 cut(s) 161
NmuCI GTSAC 1 cut(s) 152
PciSI GCTCTTC 1 cut(s) 139
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 1 cut(s) 95
PkrI GCNGC 4 cut(s) 23, 32, 75, 178
PsiI TTATAA 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 161
SapI GCTCTTC 1 cut(s) 139
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 4 cut(s) 22, 31, 74, 177
SduI GDGCHC 2 cut(s) 151, 281
SetI ASST 4 cut(s) 178, 225, 267, 278
Sse9I AATT 3 cut(s) 118, 124, 213
SsiI CCGC 4 cut(s) 15, 21, 30, 251
TaiI ACGT 1 cut(s) 278
TaqI TCGA 1 cut(s) 93
TasI AATT 3 cut(s) 118, 124, 213
TauI GCSGC 2 cut(s) 24, 33
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TscAI CASTG 2 cut(s) 161, 198
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 2 cut(s) 73, 176
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 161, 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.