Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

15246517 .. 15247455

Gene Structure 939 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGTGGAAGAAACATTGAAGCTAGCATATGGGGAGAATTCGGAGCACATTAAAGATAAAAGGATAGCAGCAGTGCAAGCTCTCTCTGGAACGGGTGCATGCCGTCTTTTTGCAGACTTTCAAAAGCGTTTTCGCACTGAGTCTCAAATCTATATGCCAGTTCCTACATGGGCCAACCATCATAACATCTGGAGAGATGCTCATGTCCCCCAGAAGACTTTCCATTACTATCATCCAGAATCTAAGGGGTTGGACTTTGCAGGACTGATAAATGACATAAAGAATGCTCCAAACAGCTCGTTCTTTCTACTTCATGCGTGCGCTCACAATCCCACTGGAGTGGATCCTTCTGAGGAACAATGGAAAGAGATCTCAAAACAGATCATGGAAAAGGGACATTTCCCCTTCTTTGACATGGCATATCAAGGTTTTGCTAGTGGTGACCCTGAGAGAGACGCAAAAGCCATCAGGATTTTCCTTGAGGATGGTCATCTAATTGGGATTGCACAATCATATGCCAAAAACATGGGACTCTATGGTCAGAGAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004069 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006103 GO:0006520 GO:0006531 GO:0006536 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009064 GO:0009066 GO:0009987 GO:0010035 GO:0010038 GO:0016740 GO:0016769 GO:0019752 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051186 GO:0071704 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00270 ko00330 ko00350 ko00360 ko00400 ko00710 ko00950 ko00960 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04975 map00220 map00250 map00270 map00330 map00350 map00360 map00400 map00710 map00950 map00960 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04975

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

184

Amino Acids

20.84

Weight (kDa)

6.54

Isoelectric Point (pI)

52.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	7 - 183	5.4e-50	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	537
AclWI	GGATC	2 cut(s)	338, 351
AcsI	RAATTY	1 cut(s)	37
AgsI	TTSAA	2 cut(s)	19, 122
AleI	CACNNNNGTG	1 cut(s)	338
AluBI	AGCT	3 cut(s)	22, 80, 297
AluI	AGCT	3 cut(s)	22, 80, 297
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	2 cut(s)	147, 447
AlwI	GGATC	2 cut(s)	338, 351
AoxI	GGCC	1 cut(s)	171
ApeKI	GCWGC	1 cut(s)	68
ApoI	RAATTY	1 cut(s)	37
Asp700I	GAANNNNTTC	1 cut(s)	218
AspLEI	GCGC	1 cut(s)	323
AspS9I	GGNCC	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	452
AsuNHI	GCTAGC	1 cut(s)	22
BamHI	GGATCC	1 cut(s)	343
BbsI	GAAGAC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	80
BccI	CCATC	3 cut(s)	186, 473, 479
BceAI	ACGGC	1 cut(s)	87
BcoDI	GTCTC	2 cut(s)	147, 447
BfaI	CTAG	2 cut(s)	23, 435
BglII	AGATCT	1 cut(s)	369
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	345
BmsI	GCATC	1 cut(s)	187
BmtI	GCTAGC	1 cut(s)	26
BpiI	GAAGAC	1 cut(s)	221
BplI	GAGNNNNNCTC	2 cut(s)	184, 216
BpmI	CTGGAG	2 cut(s)	211, 357
BpuEI	CTTGAG	1 cut(s)	500
BsaBI	GATNNNNATC	1 cut(s)	489
Bse1I	ACTGG	2 cut(s)	158, 340
Bse8I	GATNNNNATC	1 cut(s)	489
BseGI	GGATG	2 cut(s)	232, 490
BseJI	GATNNNNATC	1 cut(s)	489
BseMII	CTCAG	3 cut(s)	129, 342, 438
BseNI	ACTGG	2 cut(s)	158, 340
BseXI	GCAGC	1 cut(s)	80
BshFI	GGCC	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	48
BslFI	GGGAC	3 cut(s)	191, 408, 543
BsmAI	GTCTC	2 cut(s)	147, 447
BsmBI	CGTCTC	1 cut(s)	447
BsmFI	GGGAC	3 cut(s)	191, 408, 543
BsmI	GAATGC	1 cut(s)	289
BsnI	GGCC	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	3 cut(s)	343, 369, 381
BspANI	GGCC	1 cut(s)	173
BspCNI	CTCAG	3 cut(s)	130, 343, 439
BspLI	GGNNCC	1 cut(s)	345
BspOI	GCTAGC	1 cut(s)	26
BspPI	GGATC	2 cut(s)	338, 351
BsrI	ACTGG	2 cut(s)	158, 340
BssMI	GATC	3 cut(s)	343, 369, 381
BstC8I	GCNNGC	4 cut(s)	24, 78, 100, 319
BstDEI	CTNAG	4 cut(s)	138, 243, 351, 447
BstEII	GGTNACC	1 cut(s)	440
BstF5I	GGATG	2 cut(s)	232, 490
BstHHI	GCGC	1 cut(s)	323
BstKTI	GATC	3 cut(s)	346, 372, 384
BstMAI	GTCTC	2 cut(s)	147, 447
BstMBI	GATC	3 cut(s)	343, 369, 381
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNSI	RCATGY	1 cut(s)	102
BstPI	GGTNACC	1 cut(s)	440
BstV1I	GCAGC	1 cut(s)	80
BstV2I	GAAGAC	1 cut(s)	221
BstX2I	RGATCY	2 cut(s)	343, 369
BstXI	CCANNNNNNTGG	2 cut(s)	340, 526
BstYI	RGATCY	2 cut(s)	343, 369
BsuRI	GGCC	1 cut(s)	173
BtsCI	GGATG	2 cut(s)	232, 490
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	3 cut(s)	78, 135, 333
Cac8I	GCNNGC	4 cut(s)	24, 78, 100, 319
CfoI	GCGC	1 cut(s)	323
Cfr13I	GGNCC	1 cut(s)	171
CseI	GACGC	1 cut(s)	464
CviAII	CATG	7 cut(s)	99, 168, 203, 314, 385, 415, 526
CviJI	RGCY	5 cut(s)	22, 80, 173, 297, 464
CviKI_1	RGCY	5 cut(s)	22, 80, 173, 297, 464
DdeI	CTNAG	4 cut(s)	138, 243, 351, 447
DpnI	GATC	3 cut(s)	345, 371, 383
DpnII	GATC	3 cut(s)	343, 369, 381
DrdI	GACNNNNNNGTC	1 cut(s)	537
DseDI	GACNNNNNNGTC	1 cut(s)	537
Eco91I	GGTNACC	1 cut(s)	440
EcoO65I	GGTNACC	1 cut(s)	440
EcoRI	GAATTC	1 cut(s)	37
Esp3I	CGTCTC	1 cut(s)	447
FaeI	CATG	7 cut(s)	102, 171, 206, 317, 388, 418, 529
FaqI	GGGAC	3 cut(s)	191, 408, 543
FatI	CATG	7 cut(s)	98, 167, 202, 313, 384, 414, 525
FauNDI	CATATG	2 cut(s)	28, 514
Fnu4HI	GCNGC	1 cut(s)	69
FokI	GGATG	2 cut(s)	219, 497
Fsp4HI	GCNGC	1 cut(s)	69
FspBI	CTAG	2 cut(s)	23, 435
GlaI	GCGC	1 cut(s)	322
GluI	GCNGC	1 cut(s)	69
GsuI	CTGGAG	2 cut(s)	211, 357
HaeIII	GGCC	1 cut(s)	173
HgaI	GACGC	1 cut(s)	464
HhaI	GCGC	1 cut(s)	323
Hin1II	CATG	7 cut(s)	102, 171, 206, 317, 388, 418, 529
Hin6I	GCGC	1 cut(s)	321
HinP1I	GCGC	1 cut(s)	321
HinfI	GANTC	3 cut(s)	140, 239, 531
HphI	GGTGA	1 cut(s)	452
Hpy188I	TCNGA	3 cut(s)	43, 352, 543
Hpy188III	TCNNGA	4 cut(s)	87, 190, 236, 469
HpyAV	CCTTC	2 cut(s)	357, 415
HpyCH4V	TGCA	5 cut(s)	76, 98, 113, 260, 506
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	4 cut(s)	138, 243, 351, 447
Hsp92II	CATG	7 cut(s)	102, 171, 206, 317, 388, 418, 529
HspAI	GCGC	1 cut(s)	321
Kzo9I	GATC	3 cut(s)	343, 369, 381
LmnI	GCTCC	2 cut(s)	43, 292
LpnPI	CCDG	9 cut(s)	72, 171, 175, 224, 246, 249, 321, 454, 459
Lsp1109I	GCAGC	1 cut(s)	80
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	2 cut(s)	23, 435
MaeIII	GTNAC	1 cut(s)	440
MalI	GATC	3 cut(s)	345, 371, 383
MboI	GATC	3 cut(s)	343, 369, 381
MboII	GAAGA	2 cut(s)	20, 226
MflI	RGATCY	2 cut(s)	343, 369
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	2 cut(s)	37, 495
MlyI	GAGTC	2 cut(s)	149, 525
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	2 cut(s)	346, 475
MroXI	GAANNNNTTC	1 cut(s)	218
MseI	TTAA	1 cut(s)	51
MslI	CAYNNNNRTG	1 cut(s)	338
Mva1269I	GAATGC	1 cut(s)	289
MwoI	GCNNNNNNNGC	1 cut(s)	77
NdeI	CATATG	2 cut(s)	28, 514
NdeII	GATC	3 cut(s)	343, 369, 381
NheI	GCTAGC	1 cut(s)	22
NlaIII	CATG	7 cut(s)	102, 171, 206, 317, 388, 418, 529
NlaIV	GGNNCC	1 cut(s)	345
NmuCI	GTSAC	1 cut(s)	440
NspI	RCATGY	1 cut(s)	102
OliI	CACNNNNGTG	1 cut(s)	338
PaeI	GCATGC	1 cut(s)	102
PctI	GAATGC	1 cut(s)	289
PdmI	GAANNNNTTC	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	70
PleI	GAGTC	2 cut(s)	148, 525
PpsI	GAGTC	2 cut(s)	148, 525
PspEI	GGTNACC	1 cut(s)	440
PspN4I	GGNNCC	1 cut(s)	345
PspPI	GGNCC	1 cut(s)	171
PsuI	RGATCY	2 cut(s)	343, 369
RseI	CAYNNNNRTG	1 cut(s)	338
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	3 cut(s)	343, 369, 381
Sau96I	GGNCC	1 cut(s)	171
SchI	GAGTC	2 cut(s)	149, 525
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	4 cut(s)	24, 82, 299, 430
SfaNI	GCATC	1 cut(s)	187
SmiMI	CAYNNNNRTG	1 cut(s)	338
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
SphI	GCATGC	1 cut(s)	102
Sse9I	AATT	2 cut(s)	37, 495
SspMI	CTAG	2 cut(s)	23, 435
TasI	AATT	2 cut(s)	37, 495
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	3 cut(s)	78, 142, 340
TseFI	GTSAC	1 cut(s)	440
TseI	GCWGC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	440
TspDTI	ATGAA	1 cut(s)	302
TspRI	CASTG	3 cut(s)	78, 142, 340
XapI	RAATTY	1 cut(s)	37
XceI	RCATGY	1 cut(s)	102
XcmI	CCANNNNNNNNNTGG	1 cut(s)	165
XmnI	GAANNNNTTC	1 cut(s)	218
XspI	CTAG	2 cut(s)	23, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.