Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

16112691 .. 16113973

Gene Structure 1283 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCGATGGATCGCGTCACATGGCGAACCCAAGTTCTCTCGAACCACCTCAACCAACCCTCACCGAGCTCTCTCCCTCTTTCCCCCAACCCCTGCCTCGGTTTTTTTCCGCCCGAGCTCTCCGAGACCTTCGAATTCGACACCAAGGAGATGCGCAAGTTCCTCGACGCCCACAATCTCGAGGACCGGGACTGGGGCGGTGCCATCCAAGTTTTCGGCACAAAGCGCCATCACGACAAGTGGCTGAGGGACACTGAGAATTATGCCATCATGGGTTGCTTTGCAATGTCTGAGTTGGGCCACGGTAGTAATATATGGATTGAAACAGTCACCACTTATGATTCGAATACTGGAGAATTTGTTATTAGTACTCCTTGTGAATCAGCTCAGAATTATTGGATTGGAGCAGCAGCTAATCATGCCACACACTCAATAGTCTTTTCACAACTCAGTATTTCCGGGAACAACCAAGGTGTCCATGCTCTTATAGCCCATATCAGGGATGAAAATGGTAATGTCTGTCCAGGAGTTCGTATTGCCGATTGTGGTCACAAAATTGGCTTAAATGGTGTTGATAATGGTCGAATATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003995 GO:0003997 GO:0005488 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0016042 GO:0016054 GO:0016491 GO:0016627 GO:0016634 GO:0019395 GO:0019752 GO:0030258 GO:0032787 GO:0033539 GO:0034440 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0046395 GO:0048037 GO:0050660 GO:0050662 GO:0051791 GO:0055114 GO:0071704 GO:0072329 GO:0097159 GO:1901265 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00071 ko00592 ko01040 ko01100 ko01110 ko01212 ko03320 ko04024 ko04146 map00071 map00592 map01040 map01100 map01110 map01212 map03320 map04024 map04146

Pfam Domains

Protein Families

ACOX Acyl-CoA_dh_1 Acyl-CoA_dh_M

Protein Analysis

198

Amino Acids

21.93

Weight (kDa)

5.61

Isoelectric Point (pI)

33.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	155
AccB1I	GGYRCC	1 cut(s)	200
AccII	CGCG	1 cut(s)	15
AciI	CCGC	2 cut(s)	110, 198
AclWI	GGATC	1 cut(s)	18
AcsI	RAATTY	2 cut(s)	134, 356
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	1 cut(s)	370
AfiI	CCNNNNNNNGG	4 cut(s)	98, 193, 498, 499
AgsI	TTSAA	1 cut(s)	323
AjnI	CCWGG	1 cut(s)	523
AluBI	AGCT	4 cut(s)	69, 118, 386, 413
AluI	AGCT	4 cut(s)	69, 118, 386, 413
Alw21I	GWGCWC	2 cut(s)	71, 120
Alw26I	GTCTC	1 cut(s)	119
AlwI	GGATC	1 cut(s)	18
Ama87I	CYCGRG	2 cut(s)	113, 179
AoxI	GGCC	1 cut(s)	298
ApeKI	GCWGC	2 cut(s)	407, 410
ApoI	RAATTY	2 cut(s)	134, 356
AspLEI	GCGC	2 cut(s)	156, 228
AspS9I	GGNCC	2 cut(s)	184, 298
AsuC2I	CCSGG	2 cut(s)	188, 460
AsuHPI	GGTGA	2 cut(s)	54, 322
AsuII	TTCGAA	2 cut(s)	132, 344
AvaI	CYCGRG	2 cut(s)	113, 179
AvaII	GGWCC	1 cut(s)	184
BanI	GGYRCC	1 cut(s)	200
BanII	GRGCYC	2 cut(s)	71, 120
Bbv12I	GWGCWC	2 cut(s)	71, 120
BbvCI	CCTCAGC	1 cut(s)	245
BbvI	GCAGC	2 cut(s)	419, 422
BccI	CCATC	3 cut(s)	212, 237, 275
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BciT130I	CCWGG	1 cut(s)	525
BcnI	CCSGG	2 cut(s)	188, 460
BcoDI	GTCTC	1 cut(s)	119
BfoI	RGCGCY	1 cut(s)	229
BisI	GCNGC	2 cut(s)	408, 411
BlsI	GCNGC	2 cut(s)	409, 412
BmcAI	AGTACT	1 cut(s)	370
Bme1390I	CCNGG	3 cut(s)	188, 460, 525
Bme18I	GGWCC	1 cut(s)	184
BmeT110I	CYCGRG	2 cut(s)	113, 179
BmgT120I	GGNCC	2 cut(s)	184, 298
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	3 cut(s)	188, 460, 525
BmrI	ACTGGG	1 cut(s)	202
BmsI	GCATC	1 cut(s)	141
BmuI	ACTGGG	1 cut(s)	202
BpmI	CTGGAG	1 cut(s)	372
Bpu10I	CCTNAGC	1 cut(s)	245
Bpu14I	TTCGAA	2 cut(s)	132, 344
BpuMI	CCSGG	2 cut(s)	188, 460
BsaHI	GRCGYC	1 cut(s)	168
BsaI	GGTCTC	1 cut(s)	119
BsaJI	CCNNGG	4 cut(s)	97, 144, 301, 469
BsaXI	ACNNNNNCTCC	2 cut(s)	345, 375
Bsc4I	CCNNNNNNNGG	4 cut(s)	98, 193, 498, 499
Bse1I	ACTGG	2 cut(s)	197, 355
Bse3DI	GCAATG	1 cut(s)	291
BseBI	CCWGG	1 cut(s)	525
BseDI	CCNNGG	4 cut(s)	97, 144, 301, 469
BseGI	GGATG	2 cut(s)	204, 508
BseLI	CCNNNNNNNGG	4 cut(s)	98, 193, 498, 499
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	5 cut(s)	236, 246, 282, 401, 463
BseNI	ACTGG	2 cut(s)	197, 355
BseXI	GCAGC	2 cut(s)	419, 422
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	1 cut(s)	300
BshNI	GGYRCC	1 cut(s)	200
BsiHKAI	GWGCWC	2 cut(s)	71, 120
BsiHKCI	CYCGRG	2 cut(s)	113, 179
BsiSI	CCGG	2 cut(s)	187, 459
BslFI	GGGAC	2 cut(s)	203, 263
BslI	CCNNNNNNNGG	4 cut(s)	98, 193, 498, 499
BsmAI	GTCTC	1 cut(s)	119
BsmFI	GGGAC	2 cut(s)	203, 263
BsnI	GGCC	1 cut(s)	300
Bso31I	GGTCTC	1 cut(s)	119
BsoBI	CYCGRG	2 cut(s)	113, 179
Bsp119I	TTCGAA	2 cut(s)	132, 344
Bsp1286I	GDGCHC	2 cut(s)	71, 120
Bsp143I	GATC	1 cut(s)	10
BspACI	CCGC	2 cut(s)	110, 198
BspANI	GGCC	1 cut(s)	300
BspCNI	CTCAG	5 cut(s)	237, 247, 283, 400, 462
BspFNI	CGCG	1 cut(s)	15
BspLI	GGNNCC	1 cut(s)	202
BspPI	GGATC	1 cut(s)	18
BspT104I	TTCGAA	2 cut(s)	132, 344
BspT107I	GGYRCC	1 cut(s)	200
BspTNI	GGTCTC	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	291
BsrI	ACTGG	2 cut(s)	197, 355
BssECI	CCNNGG	4 cut(s)	97, 144, 301, 469
BssMI	GATC	1 cut(s)	10
BssNI	GRCGYC	1 cut(s)	168
BssT1I	CCWWGG	2 cut(s)	144, 469
Bst2UI	CCWGG	1 cut(s)	525
Bst4CI	ACNGT	2 cut(s)	305, 328
BstACI	GRCGYC	1 cut(s)	168
BstBI	TTCGAA	2 cut(s)	132, 344
BstDEI	CTNAG	5 cut(s)	245, 255, 291, 387, 449
BstDSI	CCRYGG	1 cut(s)	301
BstF5I	GGATG	2 cut(s)	204, 508
BstFNI	CGCG	1 cut(s)	15
BstH2I	RGCGCY	1 cut(s)	229
BstHHI	GCGC	2 cut(s)	156, 228
BstKTI	GATC	1 cut(s)	13
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	1 cut(s)	10
BstMWI	GCNNNNNNNGC	3 cut(s)	225, 419, 488
BstNI	CCWGG	1 cut(s)	525
BstSCI	CCNGG	3 cut(s)	186, 458, 523
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	2 cut(s)	419, 422
BsuRI	GGCC	1 cut(s)	300
BtgI	CCRYGG	1 cut(s)	301
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	204, 508
BtsIMutI	CAGTG	1 cut(s)	252
CfoI	GCGC	2 cut(s)	156, 228
Cfr13I	GGNCC	2 cut(s)	184, 298
CseI	GACGC	2 cut(s)	4, 176
Csp6I	GTAC	1 cut(s)	369
CviAII	CATG	4 cut(s)	21, 271, 419, 479
CviJI	RGCY	8 cut(s)	69, 118, 244, 300, 386, 413, 491, 561
CviKI_1	RGCY	8 cut(s)	69, 118, 244, 300, 386, 413, 491, 561
CviQI	GTAC	1 cut(s)	369
DdeI	CTNAG	5 cut(s)	245, 255, 291, 387, 449
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
EciI	GGCGGA	1 cut(s)	99
Ecl136II	GAGCTC	2 cut(s)	69, 118
Eco130I	CCWWGG	2 cut(s)	144, 469
Eco24I	GRGCYC	2 cut(s)	71, 120
Eco31I	GGTCTC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	184
Eco53kI	GAGCTC	2 cut(s)	69, 118
Eco88I	CYCGRG	2 cut(s)	113, 179
EcoICRI	GAGCTC	2 cut(s)	69, 118
EcoRI	GAATTC	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	523
EcoT14I	CCWWGG	2 cut(s)	144, 469
EcoT38I	GRGCYC	2 cut(s)	71, 120
ErhI	CCWWGG	2 cut(s)	144, 469
FaeI	CATG	4 cut(s)	24, 274, 422, 482
FaqI	GGGAC	2 cut(s)	203, 263
FatI	CATG	4 cut(s)	20, 270, 418, 478
Fnu4HI	GCNGC	2 cut(s)	408, 411
FokI	GGATG	2 cut(s)	191, 515
FriOI	GRGCYC	2 cut(s)	71, 120
Fsp4HI	GCNGC	2 cut(s)	408, 411
FspI	TGCGCA	1 cut(s)	155
GlaI	GCGC	2 cut(s)	155, 227
GluI	GCNGC	2 cut(s)	408, 411
GsuI	CTGGAG	1 cut(s)	372
HaeII	RGCGCY	1 cut(s)	229
HaeIII	GGCC	1 cut(s)	300
HapII	CCGG	2 cut(s)	187, 459
HgaI	GACGC	2 cut(s)	4, 176
HhaI	GCGC	2 cut(s)	156, 228
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	4 cut(s)	24, 274, 422, 482
Hin6I	GCGC	2 cut(s)	154, 226
HinP1I	GCGC	2 cut(s)	154, 226
HinfI	GANTC	2 cut(s)	341, 380
HpaII	CCGG	2 cut(s)	187, 459
HphI	GGTGA	2 cut(s)	54, 322
Hpy188I	TCNGA	3 cut(s)	124, 292, 390
Hpy188III	TCNNGA	3 cut(s)	40, 179, 233
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	2 cut(s)	305, 328
HpyCH4V	TGCA	1 cut(s)	284
HpyF10VI	GCNNNNNNNGC	3 cut(s)	225, 419, 488
HpyF3I	CTNAG	5 cut(s)	245, 255, 291, 387, 449
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	4 cut(s)	24, 274, 422, 482
HspAI	GCGC	2 cut(s)	154, 226
Kzo9I	GATC	1 cut(s)	10
LmnI	GCTCC	1 cut(s)	404
LpnPI	CCDG	8 cut(s)	106, 178, 200, 336, 472, 484, 510, 537
Lsp1109I	GCAGC	2 cut(s)	419, 422
LweI	GCATC	1 cut(s)	141
MaeIII	GTNAC	3 cut(s)	16, 328, 548
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MhlI	GDGCHC	2 cut(s)	71, 120
MluCI	AATT	5 cut(s)	134, 259, 356, 391, 555
MnlI	CCTC	7 cut(s)	59, 70, 87, 107, 173, 175, 240
MseI	TTAA	1 cut(s)	563
MspI	CCGG	2 cut(s)	187, 459
MspR9I	CCNGG	3 cut(s)	188, 460, 525
MvaI	CCWGG	1 cut(s)	525
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	3 cut(s)	225, 419, 488
NciI	CCSGG	2 cut(s)	188, 460
NdeII	GATC	1 cut(s)	10
NlaIII	CATG	4 cut(s)	24, 274, 422, 482
NlaIV	GGNNCC	1 cut(s)	202
NmuCI	GTSAC	3 cut(s)	16, 328, 548
NsbI	TGCGCA	1 cut(s)	155
NspV	TTCGAA	2 cut(s)	132, 344
PaeR7I	CTCGAG	1 cut(s)	179
PfeI	GAWTC	2 cut(s)	341, 380
PfoI	TCCNGGA	2 cut(s)	458, 523
PkrI	GCNGC	2 cut(s)	409, 412
Psp124BI	GAGCTC	2 cut(s)	71, 120
Psp6I	CCWGG	1 cut(s)	523
PspGI	CCWGG	1 cut(s)	523
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	2 cut(s)	184, 298
RsaI	GTAC	1 cut(s)	370
RsaNI	GTAC	1 cut(s)	369
SacI	GAGCTC	2 cut(s)	71, 120
SaqAI	TTAA	1 cut(s)	563
SatI	GCNGC	2 cut(s)	408, 411
Sau3AI	GATC	1 cut(s)	10
Sau96I	GGNCC	2 cut(s)	184, 298
ScaI	AGTACT	1 cut(s)	370
ScrFI	CCNGG	3 cut(s)	188, 460, 525
SduI	GDGCHC	2 cut(s)	71, 120
SetI	ASST	7 cut(s)	51, 71, 120, 131, 388, 415, 475
SfaNI	GCATC	1 cut(s)	141
Sfr274I	CTCGAG	1 cut(s)	179
SfuI	TTCGAA	2 cut(s)	132, 344
SinI	GGWCC	1 cut(s)	184
SlaI	CTCGAG	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	5 cut(s)	134, 259, 356, 391, 555
SsiI	CCGC	2 cut(s)	110, 198
SstI	GAGCTC	2 cut(s)	71, 120
StyD4I	CCNGG	3 cut(s)	186, 458, 523
StyI	CCWWGG	2 cut(s)	144, 469
TaaI	ACNGT	2 cut(s)	305, 328
TaqI	TCGA	7 cut(s)	41, 132, 138, 165, 180, 344, 583
TasI	AATT	5 cut(s)	134, 259, 356, 391, 555
TatI	WGTACW	1 cut(s)	368
TfiI	GAWTC	2 cut(s)	341, 380
Tru1I	TTAA	1 cut(s)	563
Tru9I	TTAA	1 cut(s)	563
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	3 cut(s)	16, 328, 548
TseI	GCWGC	2 cut(s)	407, 410
Tsp45I	GTSAC	3 cut(s)	16, 328, 548
TspDTI	ATGAA	1 cut(s)	519
TspRI	CASTG	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	184
XapI	RAATTY	2 cut(s)	134, 356
XhoI	CTCGAG	1 cut(s)	179
ZrmI	AGTACT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.