Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

16690222 .. 16691053

Gene Structure 832 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGATAGATGAAGGGGAACTTGACTGGAAAATTATTGCAATTTCATTGGATGATCGAAGGGCTTCTCTCGTTAATGACATTGATGATGTTGAGAAGCATTTCCCGGGGACTCTCACTGCAGTAAGGGACTGGTTTAGAGACTACAAGATACCAGATGGAAAGCCTGCTAAGAAGTTTGGTCTTGGCAACAAAGCAGCAAACAAGGTAAATTTACATCTAGGCCGCCAAATTGCTATTTTTCCTTTATCTCCTTATTGGTTTCTTTATTGTTTCAGTCACCAGCTTTCAATGACCCTACCCTCTGACCTAGTAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010876 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019915 GO:0031967 GO:0031975 GO:0033036 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0051179 GO:0051235 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Pyrophosphatase

Protein Analysis

106

Amino Acids

11.98

Weight (kDa)

6.26

Isoelectric Point (pI)

24.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyrophosphatase	PF00719	1 - 60	4.9e-13	Inorganic pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	223
AcsI	RAATTY	1 cut(s)	208
AgsI	TTSAA	1 cut(s)	288
AluBI	AGCT	1 cut(s)	283
AluI	AGCT	1 cut(s)	283
Alw26I	GTCTC	1 cut(s)	132
Ama87I	CYCGRG	1 cut(s)	103
AoxI	GGCC	1 cut(s)	220
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	1 cut(s)	208
Asp700I	GAANNNNTTC	2 cut(s)	61, 98
AsuC2I	CCSGG	2 cut(s)	104, 105
AsuHPI	GGTGA	1 cut(s)	269
AvaI	CYCGRG	1 cut(s)	103
BbvI	GCAGC	1 cut(s)	206
BccI	CCATC	1 cut(s)	149
BcnI	CCSGG	2 cut(s)	104, 105
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	2 cut(s)	218, 308
BfmI	CTRYAG	1 cut(s)	117
BisI	GCNGC	2 cut(s)	195, 223
BlsI	GCNGC	2 cut(s)	196, 224
Bme1390I	CCNGG	2 cut(s)	104, 105
BmeT110I	CYCGRG	1 cut(s)	103
BmrFI	CCNGG	2 cut(s)	104, 105
BpuMI	CCSGG	2 cut(s)	104, 105
BsaJI	CCNNGG	2 cut(s)	103, 104
Bse1I	ACTGG	2 cut(s)	29, 134
BseDI	CCNNGG	2 cut(s)	103, 104
BseGI	GGATG	1 cut(s)	55
BseNI	ACTGG	2 cut(s)	29, 134
BseXI	GCAGC	1 cut(s)	206
BshFI	GGCC	1 cut(s)	222
BsiHKCI	CYCGRG	1 cut(s)	103
BsiSI	CCGG	1 cut(s)	104
BslFI	GGGAC	2 cut(s)	121, 140
BsmAI	GTCTC	1 cut(s)	132
BsmFI	GGGAC	2 cut(s)	121, 140
BsnI	GGCC	1 cut(s)	222
BsoBI	CYCGRG	1 cut(s)	103
Bsp143I	GATC	1 cut(s)	52
BspACI	CCGC	1 cut(s)	223
BspANI	GGCC	1 cut(s)	222
BspMAI	CTGCAG	1 cut(s)	121
BsrI	ACTGG	2 cut(s)	29, 134
BssECI	CCNNGG	2 cut(s)	103, 104
BssMI	GATC	1 cut(s)	52
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	1 cut(s)	168
BstF5I	GGATG	1 cut(s)	55
BstKTI	GATC	1 cut(s)	55
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	1 cut(s)	52
BstSCI	CCNGG	2 cut(s)	102, 103
BstSFI	CTRYAG	1 cut(s)	117
BstV1I	GCAGC	1 cut(s)	206
BsuRI	GGCC	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	55
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	114
Cac8I	GCNNGC	1 cut(s)	165
Cfr9I	CCCGGG	1 cut(s)	103
CviJI	RGCY	4 cut(s)	62, 163, 222, 283
CviKI_1	RGCY	4 cut(s)	62, 163, 222, 283
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
Eco88I	CYCGRG	1 cut(s)	103
FaiI	YATR	1 cut(s)	316
FalI	AAGNNNNNCTT	1 cut(s)	35
FaqI	GGGAC	2 cut(s)	121, 140
Fnu4HI	GCNGC	2 cut(s)	195, 223
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	2 cut(s)	195, 223
FspBI	CTAG	2 cut(s)	218, 308
GluI	GCNGC	2 cut(s)	195, 223
HaeIII	GGCC	1 cut(s)	222
HapII	CCGG	1 cut(s)	104
HinfI	GANTC	1 cut(s)	109
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	1 cut(s)	269
Hpy188I	TCNGA	1 cut(s)	304
HpyAV	CCTTC	2 cut(s)	5, 51
HpyCH4V	TGCA	2 cut(s)	38, 119
HpyF3I	CTNAG	1 cut(s)	168
Kzo9I	GATC	1 cut(s)	52
LpnPI	CCDG	6 cut(s)	10, 115, 117, 165, 177, 293
Lsp1109I	GCAGC	1 cut(s)	206
MaeI	CTAG	2 cut(s)	218, 308
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MluCI	AATT	4 cut(s)	30, 39, 208, 228
MlyI	GAGTC	1 cut(s)	103
MnlI	CCTC	1 cut(s)	310
MroXI	GAANNNNTTC	2 cut(s)	61, 98
MseI	TTAA	1 cut(s)	72
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	2 cut(s)	104, 105
NciI	CCSGG	2 cut(s)	104, 105
NdeII	GATC	1 cut(s)	52
NmuCI	GTSAC	1 cut(s)	275
PdmI	GAANNNNTTC	2 cut(s)	61, 98
PkrI	GCNGC	2 cut(s)	196, 224
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
PstI	CTGCAG	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	2 cut(s)	195, 223
Sau3AI	GATC	1 cut(s)	52
SchI	GAGTC	1 cut(s)	103
ScrFI	CCNGG	2 cut(s)	104, 105
SetI	ASST	3 cut(s)	207, 285, 309
SfcI	CTRYAG	1 cut(s)	117
SmaI	CCCGGG	1 cut(s)	105
Sse9I	AATT	4 cut(s)	30, 39, 208, 228
SsiI	CCGC	1 cut(s)	223
SspMI	CTAG	2 cut(s)	218, 308
StyD4I	CCNGG	2 cut(s)	102, 103
TaqI	TCGA	1 cut(s)	55
TasI	AATT	4 cut(s)	30, 39, 208, 228
TauI	GCSGC	1 cut(s)	225
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	1 cut(s)	194
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	2 cut(s)	24, 33
TspMI	CCCGGG	1 cut(s)	103
TspRI	CASTG	1 cut(s)	121
XapI	RAATTY	1 cut(s)	208
XmaI	CCCGGG	1 cut(s)	103
XmnI	GAANNNNTTC	2 cut(s)	61, 98
XspI	CTAG	2 cut(s)	218, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.