Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

17153747 .. 17154403

Gene Structure 657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGTCCTCCCTGCTGTCCATGAGTCAGCAATCACATGTCCTCTTGCTGTCATTCCTTTATGGCAATGATGACTCTAGTTGTAATGATGGAAGCCACCACCAGACTCGGACTTGGTCTAACACACACAAGATCGTTTCAACAAAAATTCCAACACCACAGGCTTCTGGTATCTCATCCCCTTGGGGTGTTGATGACTTGCTGCAGTTATCAGAATTTGAATCTTCCGACAAGAAAGAGTCGTTTGAGTTTGGTGAACTTGAATGGATAGGCGACATGGGTGTTTTCCGCGAAGAGCAGTTTCCTCAAAAAGCCATGGGAGCAGTAGCTGAAGTTCCTAAGCTTCCGGTGTCACAGTCAACCAATTTCACCTCGTATAGTCCCGCCAAATTGAACAATCCGTACAAGAAGCCTAGGATCGAAATGTTGGAGGACGACGAAGATCACTTCACCGTCCCTGATCTTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000988 GO:0000989 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0010099 GO:0010100 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-B_box

Protein Analysis

156

Amino Acids

17.34

Weight (kDa)

4.71

Isoelectric Point (pI)

49.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	288
AciI	CCGC	2 cut(s)	286, 381
AclWI	GGATC	1 cut(s)	422
AcsI	RAATTY	2 cut(s)	144, 212
AcuI	CTGAAG	1 cut(s)	348
AfaI	GTAC	1 cut(s)	401
AfiI	CCNNNNNNNGG	1 cut(s)	461
AflIII	ACRYGT	1 cut(s)	34
AgsI	TTSAA	4 cut(s)	138, 218, 260, 391
AluBI	AGCT	2 cut(s)	326, 340
AluI	AGCT	2 cut(s)	326, 340
AlwI	GGATC	1 cut(s)	422
AlwNI	CAGNNNCTG	1 cut(s)	326
ApeKI	GCWGC	1 cut(s)	199
ApoI	RAATTY	2 cut(s)	144, 212
AspA2I	CCTAGG	1 cut(s)	410
AsuHPI	GGTGA	3 cut(s)	263, 358, 439
AvrII	CCTAGG	1 cut(s)	410
BbvI	GCAGC	1 cut(s)	186
BccI	CCATC	1 cut(s)	80
BfaI	CTAG	2 cut(s)	75, 411
BfmI	CTRYAG	1 cut(s)	200
BisI	GCNGC	1 cut(s)	200
BlnI	CCTAGG	1 cut(s)	410
BlsI	GCNGC	1 cut(s)	201
Bpu10I	CCTNAGC	1 cut(s)	336
BsaJI	CCNNGG	3 cut(s)	179, 312, 410
BsaWI	WCCGGW	1 cut(s)	343
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
Bse3DI	GCAATG	1 cut(s)	70
BseDI	CCNNGG	3 cut(s)	179, 312, 410
BseGI	GGATG	1 cut(s)	173
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseMI	GCAATG	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	186
Bsh1236I	CGCG	1 cut(s)	288
BsiSI	CCGG	1 cut(s)	344
BslFI	GGGAC	2 cut(s)	363, 437
BslI	CCNNNNNNNGG	1 cut(s)	461
BsmFI	GGGAC	2 cut(s)	363, 437
Bsp143I	GATC	4 cut(s)	129, 414, 439, 457
Bsp19I	CCATGG	1 cut(s)	312
BspACI	CCGC	2 cut(s)	286, 381
BspFNI	CGCG	1 cut(s)	288
BspMAI	CTGCAG	1 cut(s)	204
BspPI	GGATC	1 cut(s)	422
BspQI	GCTCTTC	1 cut(s)	285
BsrDI	GCAATG	1 cut(s)	70
BssECI	CCNNGG	3 cut(s)	179, 312, 410
BssMI	GATC	4 cut(s)	129, 414, 439, 457
BssT1I	CCWWGG	3 cut(s)	179, 312, 410
Bst4CI	ACNGT	2 cut(s)	354, 451
Bst6I	CTCTTC	1 cut(s)	285
BstDEI	CTNAG	1 cut(s)	336
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	173
BstFNI	CGCG	1 cut(s)	288
BstKTI	GATC	4 cut(s)	132, 417, 442, 460
BstMBI	GATC	4 cut(s)	129, 414, 439, 457
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstNSI	RCATGY	1 cut(s)	38
BstSFI	CTRYAG	1 cut(s)	200
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	186
BtgI	CCRYGG	1 cut(s)	312
BtsCI	GGATG	1 cut(s)	173
CaiI	CAGNNNCTG	1 cut(s)	326
Csp6I	GTAC	1 cut(s)	400
CviAII	CATG	4 cut(s)	19, 35, 274, 313
CviJI	RGCY	7 cut(s)	93, 161, 311, 326, 340, 409, 465
CviKI_1	RGCY	7 cut(s)	93, 161, 311, 326, 340, 409, 465
CviQI	GTAC	1 cut(s)	400
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	4 cut(s)	131, 416, 441, 459
DpnII	GATC	4 cut(s)	129, 414, 439, 457
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco130I	CCWWGG	3 cut(s)	179, 312, 410
Eco57I	CTGAAG	1 cut(s)	348
EcoT14I	CCWWGG	3 cut(s)	179, 312, 410
ErhI	CCWWGG	3 cut(s)	179, 312, 410
FaeI	CATG	4 cut(s)	22, 38, 277, 316
FaiI	YATR	6 cut(s)	20, 36, 60, 275, 314, 375
FaqI	GGGAC	2 cut(s)	363, 437
FatI	CATG	4 cut(s)	18, 34, 273, 312
FauI	CCCGC	1 cut(s)	388
Fnu4HI	GCNGC	1 cut(s)	200
FokI	GGATG	1 cut(s)	160
Fsp4HI	GCNGC	1 cut(s)	200
FspBI	CTAG	2 cut(s)	75, 411
GluI	GCNGC	1 cut(s)	200
HapII	CCGG	1 cut(s)	344
Hin1II	CATG	4 cut(s)	22, 38, 277, 316
HincII	GTYRAC	1 cut(s)	357
HindII	GTYRAC	1 cut(s)	357
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	5 cut(s)	22, 71, 103, 218, 236
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	3 cut(s)	263, 358, 439
Hpy166II	GTNNAC	2 cut(s)	254, 357
Hpy188I	TCNGA	3 cut(s)	108, 211, 226
Hpy8I	GTNNAC	2 cut(s)	254, 357
Hpy99I	CGWCG	1 cut(s)	437
HpyCH4III	ACNGT	2 cut(s)	354, 451
HpyCH4V	TGCA	1 cut(s)	202
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	1 cut(s)	336
Hsp92II	CATG	4 cut(s)	22, 38, 277, 316
Kzo9I	GATC	4 cut(s)	129, 414, 439, 457
LguI	GCTCTTC	1 cut(s)	285
LmnI	GCTCC	1 cut(s)	317
LpnPI	CCDG	5 cut(s)	23, 113, 143, 150, 357
Lsp1109I	GCAGC	1 cut(s)	186
MaeI	CTAG	2 cut(s)	75, 411
MaeIII	GTNAC	1 cut(s)	348
MalI	GATC	4 cut(s)	131, 416, 441, 459
MboI	GATC	4 cut(s)	129, 414, 439, 457
MboII	GAAGA	3 cut(s)	213, 302, 449
MluCI	AATT	4 cut(s)	144, 212, 361, 386
MlyI	GAGTC	4 cut(s)	31, 65, 97, 245
MmeI	TCCRAC	3 cut(s)	173, 249, 405
MnlI	CCTC	5 cut(s)	16, 50, 312, 379, 421
MspI	CCGG	1 cut(s)	344
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	1 cut(s)	317
NcoI	CCATGG	1 cut(s)	312
NdeII	GATC	4 cut(s)	129, 414, 439, 457
NlaIII	CATG	4 cut(s)	22, 38, 277, 316
NmuCI	GTSAC	1 cut(s)	348
NspI	RCATGY	1 cut(s)	38
PciI	ACATGT	1 cut(s)	34
PciSI	GCTCTTC	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	218
PflFI	GACNNNGTC	1 cut(s)	112
PkrI	GCNGC	1 cut(s)	201
PleI	GAGTC	4 cut(s)	30, 65, 97, 244
PpsI	GAGTC	4 cut(s)	30, 65, 97, 244
PscI	ACATGT	1 cut(s)	34
PsrI	GAACNNNNNNTAC	4 cut(s)	315, 347, 383, 415
PstI	CTGCAG	1 cut(s)	204
PstNI	CAGNNNCTG	1 cut(s)	326
PsyI	GACNNNGTC	1 cut(s)	112
RsaI	GTAC	1 cut(s)	401
RsaNI	GTAC	1 cut(s)	400
SapI	GCTCTTC	1 cut(s)	285
SatI	GCNGC	1 cut(s)	200
Sau3AI	GATC	4 cut(s)	129, 414, 439, 457
SchI	GAGTC	4 cut(s)	31, 65, 97, 245
SetI	ASST	3 cut(s)	328, 342, 371
SfcI	CTRYAG	1 cut(s)	200
Sse9I	AATT	4 cut(s)	144, 212, 361, 386
SsiI	CCGC	2 cut(s)	286, 381
SspMI	CTAG	2 cut(s)	75, 411
StyI	CCWWGG	3 cut(s)	179, 312, 410
TaaI	ACNGT	2 cut(s)	354, 451
TaqI	TCGA	1 cut(s)	417
TasI	AATT	4 cut(s)	144, 212, 361, 386
TfiI	GAWTC	1 cut(s)	218
TseFI	GTSAC	1 cut(s)	348
TseI	GCWGC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	348
TspGWI	ACGGA	1 cut(s)	387
Tth111I	GACNNNGTC	1 cut(s)	112
XapI	RAATTY	2 cut(s)	144, 212
XceI	RCATGY	1 cut(s)	38
XmaJI	CCTAGG	1 cut(s)	410
XspI	CTAG	2 cut(s)	75, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.