pycom09g17200

LisH domain and HEAT repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
N/A
Physical Location & Seq
Reverse (-)
17594708 .. 17594914
207 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 207 bp
ATGGACGTGGAGAGGTCGTCGTTGTGCAATTGCGTCGTGAATTTTCTGCTCGAAGAGAACTACCTGCTCACGGCGTTCGAGCTACTCCACGAGCTGCTCGACGATGGCAGAGACGACCAGGCCATTCGACTCAAGGACTTCTTCGCCGACTCCTCTCAATTCCCTTCCGATCAGATCTCTCGCTTCAACTCTCTCCGAGGTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.85

Weight (kDa)

4.29

Isoelectric Point (pI)

34.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 72
AcsI RAATTY 1 cut(s) 40
AfiI CCNNNNNNNGG 1 cut(s) 70
AgsI TTSAA 1 cut(s) 187
AjiI CACGTC 1 cut(s) 7
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 2 cut(s) 82, 94
AluI AGCT 2 cut(s) 82, 94
Alw26I GTCTC 1 cut(s) 105
AoxI GGCC 1 cut(s) 120
ApeKI GCWGC 1 cut(s) 94
ApoI RAATTY 1 cut(s) 40
BauI CACGAG 1 cut(s) 89
BbvI GCAGC 1 cut(s) 81
BccI CCATC 1 cut(s) 98
BceAI ACGGC 1 cut(s) 87
BcgI CGANNNNNNTGC 2 cut(s) 16, 50
BciT130I CCWGG 1 cut(s) 119
BcoDI GTCTC 1 cut(s) 105
BfuAI ACCTGC 1 cut(s) 72
BglII AGATCT 1 cut(s) 174
BisI GCNGC 1 cut(s) 95
BlsI GCNGC 1 cut(s) 96
Bme1390I CCNGG 1 cut(s) 119
BmgBI CACGTC 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 119
BpuEI CTTGAG 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 196
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 70
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 70
BseRI GAGGAG 1 cut(s) 142
BseXI GCAGC 1 cut(s) 81
BshFI GGCC 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 70
BsmAI GTCTC 1 cut(s) 105
BsmBI CGTCTC 1 cut(s) 105
BsnI GGCC 1 cut(s) 122
Bsp143I GATC 2 cut(s) 169, 174
BspANI GGCC 1 cut(s) 122
BspMI ACCTGC 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 2 cut(s) 169, 174
BssSI CACGAG 1 cut(s) 89
Bst2BI CACGAG 1 cut(s) 89
Bst2UI CCWGG 1 cut(s) 119
Bst6I CTCTTC 1 cut(s) 48
BstKTI GATC 2 cut(s) 172, 177
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 2 cut(s) 169, 174
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 117
BstV1I GCAGC 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 174
BstYI RGATCY 1 cut(s) 174
BsuRI GGCC 1 cut(s) 122
BtrI CACGTC 1 cut(s) 7
BveI ACCTGC 1 cut(s) 72
CseI GACGC 1 cut(s) 22
CviJI RGCY 3 cut(s) 82, 94, 122
CviKI_1 RGCY 3 cut(s) 82, 94, 122
DpnI GATC 2 cut(s) 171, 176
DpnII GATC 2 cut(s) 169, 174
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 117
Esp3I CGTCTC 1 cut(s) 105
FalI AAGNNNNNCTT 2 cut(s) 125, 157
Fnu4HI GCNGC 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 95
GluI GCNGC 1 cut(s) 95
HaeIII GGCC 1 cut(s) 122
HgaI GACGC 1 cut(s) 22
HinfI GANTC 2 cut(s) 129, 149
Hpy188I TCNGA 3 cut(s) 169, 174, 197
Hpy188III TCNNGA 1 cut(s) 37
Hpy99I CGWCG 3 cut(s) 22, 38, 104
HpyAV CCTTC 1 cut(s) 174
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 1 cut(s) 27
HpySE526I ACGT 1 cut(s) 6
Kzo9I GATC 2 cut(s) 169, 174
LpnPI CCDG 3 cut(s) 77, 104, 131
Lsp1109I GCAGC 1 cut(s) 81
MaeII ACGT 1 cut(s) 6
MalI GATC 2 cut(s) 171, 176
MboI GATC 2 cut(s) 169, 174
MboII GAAGA 2 cut(s) 65, 133
MfeI CAATTG 1 cut(s) 28
MflI RGATCY 1 cut(s) 174
MluCI AATT 3 cut(s) 28, 40, 158
MlyI GAGTC 2 cut(s) 123, 143
MnlI CCTC 3 cut(s) 6, 163, 191
MspR9I CCNGG 1 cut(s) 119
MunI CAATTG 1 cut(s) 28
MvaI CCWGG 1 cut(s) 119
NdeII GATC 2 cut(s) 169, 174
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PkrI GCNGC 1 cut(s) 96
PleI GAGTC 2 cut(s) 123, 143
PpsI GAGTC 2 cut(s) 123, 143
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PsuI RGATCY 1 cut(s) 174
SatI GCNGC 1 cut(s) 95
Sau3AI GATC 2 cut(s) 169, 174
SchI GAGTC 2 cut(s) 123, 143
ScrFI CCNGG 1 cut(s) 119
SetI ASST 6 cut(s) 9, 17, 66, 84, 96, 202
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 3 cut(s) 28, 40, 158
StyD4I CCNGG 1 cut(s) 117
TaiI ACGT 1 cut(s) 9
TaqI TCGA 4 cut(s) 51, 78, 99, 127
TasI AATT 3 cut(s) 28, 40, 158
TseI GCWGC 1 cut(s) 94
XapI RAATTY 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.