pycom09g18140

COX assembly mitochondrial protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
N/A
Physical Location & Seq
Forward (+)
18731327 .. 18731871
545 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 438 bp
ATGGAGCTACACATACGCAACCAAATAGATGAGTTATGTATCAGGATTTGTACAGCCAGTTCTGTTATAGCTGGATACAGTTTGGGGTTACAATTTATGAGGTTAAGGGAAGATGGTTTTGATCAAATAGATGAGTTATGTATCAGGATTTATTCGAGTTATGAAATTAAGCAGCAAGTTGATATATTTATTTTATTTCTCTTTGTGTGCGGGTGTAGATCGATCGAGGAGTTTCAGAAGTGTCATGTAGACCATCCTATTGCAAAATTCTTTGGTCAATGTACAGACCTCAAAATACAGCTCGACCGTTGTTTCCGACAGGAAAAAGCTGTGAAGAGGAAGGCAAACTTTGAAGAGAGTAAAAAACTCAAGGAAAGGCTACAAACTTTGAGGAAGGAAACTGCTGAGATAACCACTGAGAGTTCTGTACAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

146

Amino Acids

17.01

Weight (kDa)

6.82

Isoelectric Point (pI)

49.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cmc1 PF08583 74 - 128 8.5e-09 Cytochrome c oxidase biogenesis protein Cmc1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 249
AciI CCGC 1 cut(s) 210
AcsI RAATTY 1 cut(s) 266
AfaI GTAC 3 cut(s) 52, 283, 429
AgsI TTSAA 1 cut(s) 353
AluBI AGCT 5 cut(s) 7, 71, 301, 329, 434
AluI AGCT 5 cut(s) 7, 71, 301, 329, 434
ApeKI GCWGC 1 cut(s) 172
ApoI RAATTY 1 cut(s) 266
BbvI GCAGC 1 cut(s) 184
BccI CCATC 2 cut(s) 107, 261
BciVI GTATCC 1 cut(s) 68
BclI TGATCA 1 cut(s) 121
BfuI GTATCC 1 cut(s) 68
BisI GCNGC 1 cut(s) 173
BlsI GCNGC 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 353
Bsa29I ATCGAT 1 cut(s) 221
Bse1I ACTGG 1 cut(s) 57
BseCI ATCGAT 1 cut(s) 221
BseGI GGATG 1 cut(s) 253
BseMII CTCAG 2 cut(s) 396, 408
BseNI ACTGG 1 cut(s) 57
BseRI GAGGAG 1 cut(s) 242
BseXI GCAGC 1 cut(s) 184
Bsh1285I CGRYCG 2 cut(s) 225, 307
BshVI ATCGAT 1 cut(s) 221
BsiEI CGRYCG 2 cut(s) 225, 307
Bsp1407I TGTACA 3 cut(s) 50, 281, 427
Bsp143I GATC 3 cut(s) 121, 218, 222
BspACI CCGC 1 cut(s) 210
BspCNI CTCAG 2 cut(s) 397, 409
BspDI ATCGAT 1 cut(s) 221
BsrGI TGTACA 3 cut(s) 50, 281, 427
BsrI ACTGG 1 cut(s) 57
BssMI GATC 3 cut(s) 121, 218, 222
Bst4CI ACNGT 2 cut(s) 80, 308
Bst6I CTCTTC 2 cut(s) 329, 348
BstAUI TGTACA 3 cut(s) 50, 281, 427
BstDEI CTNAG 2 cut(s) 405, 417
BstF5I GGATG 1 cut(s) 253
BstKTI GATC 3 cut(s) 124, 221, 225
BstMBI GATC 3 cut(s) 121, 218, 222
BstMCI CGRYCG 2 cut(s) 225, 307
BstV1I GCAGC 1 cut(s) 184
Bsu15I ATCGAT 1 cut(s) 221
BsuI GTATCC 1 cut(s) 68
BsuTUI ATCGAT 1 cut(s) 221
BtsCI GGATG 1 cut(s) 253
BtsIMutI CAGTG 1 cut(s) 414
ClaI ATCGAT 1 cut(s) 221
Csp6I GTAC 3 cut(s) 51, 282, 428
CviAII CATG 1 cut(s) 245
CviJI RGCY 7 cut(s) 7, 56, 71, 301, 329, 379, 434
CviKI_1 RGCY 7 cut(s) 7, 56, 71, 301, 329, 379, 434
CviQI GTAC 3 cut(s) 51, 282, 428
DdeI CTNAG 2 cut(s) 405, 417
DpnI GATC 3 cut(s) 123, 220, 224
DpnII GATC 3 cut(s) 121, 218, 222
Eam1104I CTCTTC 2 cut(s) 329, 348
EarI CTCTTC 2 cut(s) 329, 348
FaeI CATG 1 cut(s) 248
FaiI YATR 8 cut(s) 14, 37, 68, 98, 139, 162, 185, 246
FalI AAGNNNNNCTT 2 cut(s) 332, 364
FatI CATG 1 cut(s) 244
FauI CCCGC 1 cut(s) 203
FbaI TGATCA 1 cut(s) 121
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 1 cut(s) 173
FokI GGATG 1 cut(s) 240
Fsp4HI GCNGC 1 cut(s) 173
GluI GCNGC 1 cut(s) 173
Hin1II CATG 1 cut(s) 248
HindIII AAGCTT 1 cut(s) 432
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 2 cut(s) 237, 317
Hpy188III TCNNGA 2 cut(s) 43, 145
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 2 cut(s) 334, 388
HpyCH4III ACNGT 2 cut(s) 80, 308
HpyCH4V TGCA 1 cut(s) 263
HpyF3I CTNAG 2 cut(s) 405, 417
Hsp92II CATG 1 cut(s) 248
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 3 cut(s) 121, 218, 222
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 5 cut(s) 28, 57, 70, 130, 305
Lsp1109I GCAGC 1 cut(s) 184
MaeIII GTNAC 1 cut(s) 87
MalI GATC 3 cut(s) 123, 220, 224
MboI GATC 3 cut(s) 121, 218, 222
MboII GAAGA 3 cut(s) 122, 346, 365
MluCI AATT 3 cut(s) 92, 165, 266
MmeI TCCRAC 1 cut(s) 340
MnlI CCTC 5 cut(s) 93, 220, 299, 330, 384
MseI TTAA 3 cut(s) 104, 168, 436
NdeII GATC 3 cut(s) 121, 218, 222
NlaIII CATG 1 cut(s) 248
PkrI GCNGC 1 cut(s) 174
Ple19I CGATCG 1 cut(s) 225
PsrI GAACNNNNNNTAC 2 cut(s) 43, 75
PvuI CGATCG 1 cut(s) 225
RsaI GTAC 3 cut(s) 52, 283, 429
RsaNI GTAC 3 cut(s) 51, 282, 428
SaqAI TTAA 3 cut(s) 104, 168, 436
SatI GCNGC 1 cut(s) 173
Sau3AI GATC 3 cut(s) 121, 218, 222
SetI ASST 7 cut(s) 9, 73, 104, 291, 303, 331, 436
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 3 cut(s) 92, 165, 266
SsiI CCGC 1 cut(s) 210
TaaI ACNGT 2 cut(s) 80, 308
TaqI TCGA 4 cut(s) 155, 221, 225, 303
TasI AATT 3 cut(s) 92, 165, 266
TatI WGTACW 3 cut(s) 50, 281, 427
Tru1I TTAA 3 cut(s) 104, 168, 436
Tru9I TTAA 3 cut(s) 104, 168, 436
TscAI CASTG 1 cut(s) 421
TseI GCWGC 1 cut(s) 172
TspDTI ATGAA 1 cut(s) 177
TspRI CASTG 1 cut(s) 421
XapI RAATTY 1 cut(s) 266
XmiI GTMKAC 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.