pycom09g18580

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
N/A
Physical Location & Seq
Reverse (-)
19366705 .. 19367415
711 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 408 bp
ATGCGGTGTCCTTACTTCTTATACTACTCATCTGACATCGATATTTTTGTTTTCCTTTGTATCTTCAGGAACTTACTGAATTTTTATGTGATTTTTGTAGCCAAAAAGCTTGGGATTCCATCACCACCACCTTATCTATCCTTGGCACAGAATGATGATGCATTGCTTAAAGGGGTTAATTATGCATCTGCTGGAGTAGGAATACTCAATGACACTGGACTCTATTTTGTAATCACATTTCTTCCAAAAATAATGTTGTTTGATGGTCAAATACAAAATTTCAACAAGACAAAGGAAGCCATCAAGGCTAAGATTGGGGCACAGGCTGCAACCAAGCTCTGCAGTGAAGCCATCTACTTCATTGGAATTGCAATGATTATGTCAACACTTACCTGCAACCATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

136

Amino Acids

15.1

Weight (kDa)

8.67

Isoelectric Point (pI)

24.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 401
AciI CCGC 1 cut(s) 4
AcsI RAATTY 2 cut(s) 79, 277
AcuI CTGAAG 1 cut(s) 49
AgsI TTSAA 1 cut(s) 283
AluBI AGCT 2 cut(s) 109, 337
AluI AGCT 2 cut(s) 109, 337
ApeKI GCWGC 1 cut(s) 326
ApoI RAATTY 2 cut(s) 79, 277
AsuHPI GGTGA 1 cut(s) 114
BaeGI GKGCMC 1 cut(s) 322
BbvI GCAGC 1 cut(s) 313
BccI CCATC 4 cut(s) 127, 257, 308, 359
BfmI CTRYAG 1 cut(s) 340
BfuAI ACCTGC 1 cut(s) 401
BglI GCCNNNNNGGC 1 cut(s) 305
BisI GCNGC 1 cut(s) 327
BlsI GCNGC 1 cut(s) 328
BmsI GCATC 2 cut(s) 148, 194
BpmI CTGGAG 1 cut(s) 213
Bsa29I ATCGAT 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 141
Bse1I ACTGG 1 cut(s) 220
Bse3DI GCAATG 2 cut(s) 161, 378
BseCI ATCGAT 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 141
BseMI GCAATG 2 cut(s) 161, 378
BseNI ACTGG 1 cut(s) 220
BseSI GKGCMC 1 cut(s) 322
BseXI GCAGC 1 cut(s) 313
BshVI ATCGAT 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 322
BspACI CCGC 1 cut(s) 4
BspDI ATCGAT 1 cut(s) 39
BspMAI CTGCAG 1 cut(s) 344
BspMI ACCTGC 1 cut(s) 401
BsrDI GCAATG 2 cut(s) 161, 378
BsrI ACTGG 1 cut(s) 220
BssECI CCNNGG 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 141
BstAPI GCANNNNNTGC 1 cut(s) 326
BstDEI CTNAG 1 cut(s) 309
BstMWI GCNNNNNNNGC 2 cut(s) 305, 326
BstSFI CTRYAG 1 cut(s) 340
BstSLI GKGCMC 1 cut(s) 322
BstV1I GCAGC 1 cut(s) 313
Bsu15I ATCGAT 1 cut(s) 39
BsuTUI ATCGAT 1 cut(s) 39
BtsI GCAGTG 1 cut(s) 349
BtsIMutI CAGTG 2 cut(s) 213, 349
BveI ACCTGC 1 cut(s) 401
ClaI ATCGAT 1 cut(s) 39
CviJI RGCY 7 cut(s) 101, 109, 299, 308, 326, 337, 350
CviKI_1 RGCY 7 cut(s) 101, 109, 299, 308, 326, 337, 350
DdeI CTNAG 1 cut(s) 309
Eco130I CCWWGG 1 cut(s) 141
Eco57I CTGAAG 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 141
EcoT22I ATGCAT 2 cut(s) 163, 187
ErhI CCWWGG 1 cut(s) 141
FaiI YATR 4 cut(s) 22, 87, 183, 380
Fnu4HI GCNGC 1 cut(s) 327
Fsp4HI GCNGC 1 cut(s) 327
GluI GCNGC 1 cut(s) 327
GsuI CTGGAG 1 cut(s) 213
HincII GTYRAC 1 cut(s) 384
HindII GTYRAC 1 cut(s) 384
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 2 cut(s) 115, 219
HphI GGTGA 1 cut(s) 114
Hpy166II GTNNAC 1 cut(s) 384
Hpy188I TCNGA 1 cut(s) 34
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 1 cut(s) 384
HpyCH4V TGCA 6 cut(s) 161, 185, 329, 342, 371, 396
HpyF10VI GCNNNNNNNGC 2 cut(s) 305, 326
HpyF3I CTNAG 1 cut(s) 309
LpnPI CCDG 4 cut(s) 52, 177, 201, 308
Lsp1109I GCAGC 1 cut(s) 313
LweI GCATC 2 cut(s) 148, 194
MboII GAAGA 2 cut(s) 55, 233
MhlI GDGCHC 1 cut(s) 322
MluCI AATT 4 cut(s) 79, 178, 277, 366
MlyI GAGTC 1 cut(s) 213
Mph1103I ATGCAT 2 cut(s) 163, 187
MseI TTAA 2 cut(s) 168, 177
MwoI GCNNNNNNNGC 2 cut(s) 305, 326
NsiI ATGCAT 2 cut(s) 163, 187
PfeI GAWTC 1 cut(s) 115
PkrI GCNGC 1 cut(s) 328
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
PstI CTGCAG 1 cut(s) 344
SaqAI TTAA 2 cut(s) 168, 177
SatI GCNGC 1 cut(s) 327
SchI GAGTC 1 cut(s) 213
SduI GDGCHC 1 cut(s) 322
SetI ASST 4 cut(s) 111, 133, 339, 395
SfaNI GCATC 2 cut(s) 148, 194
SfcI CTRYAG 1 cut(s) 340
SgeI CNNG 9 cut(s) 79, 122, 154, 204, 228, 298, 316, 335, 346
Sse9I AATT 4 cut(s) 79, 178, 277, 366
SsiI CCGC 1 cut(s) 4
StyI CCWWGG 1 cut(s) 141
TaqI TCGA 1 cut(s) 39
TasI AATT 4 cut(s) 79, 178, 277, 366
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 2 cut(s) 168, 177
Tru9I TTAA 2 cut(s) 168, 177
TscAI CASTG 2 cut(s) 220, 349
TseI GCWGC 1 cut(s) 326
TspDTI ATGAA 1 cut(s) 349
TspRI CASTG 2 cut(s) 220, 349
XapI RAATTY 2 cut(s) 79, 277
Zsp2I ATGCAT 2 cut(s) 163, 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.