Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

19418706 .. 19420126

Gene Structure 1421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGTGGTACAGGGGACGAAATGACAAGGCTTATTTGCCATCTGTGGAATTAGACATCAAATACTTTGACCTTGGTCTTCCTCATCGGGATGCCACTGATGACCAGGTTACTGTTGAAAGTGCTGAGGCGACTCTCAAGTACGTTTATCAGTATCTTTTTGCTTCGAAATTTTATTTTGCTATTTCATTCCGCATCTCTAACACTTGGTATTTTAGGTACAATGTAGCGATCAAGTGTGCAACTATTACTCCAGATGAAGCTCGTATGAAGGAGTTTAACTTGAAGAGTATGAGGAGGAGTCCCAATGGGACTATTTACGAATATTTTGAATGTGCTTTTTCTACTGGTACTGTTTTCAGAGAACCAATTATTTGCAAAAACATCCCTCGCCTTATCCCAGGCTGGACAAAGCTGATATGCATTGGAAGACATGCTTTTGGTGATCGGTATCGAGCAACTTATGCAGTCATTAGAGGACCTGGGAGACTGAAATTGGTGTTTGCACCAGAAGGAATGGATGAGAAGACAGAGCTGGAGGTTTACAACTTTACAGGGGAGGGGGGAGTTGCATTGGCCATGTACAACACTGATGAGTCCATCCGTGCTTTTGCAGGGGCTTCCATGACCACAGCTTACGAGAAAAAGTGGGCTCTTTATCCTAGCACAAAAAATACTATTCTGAAGAAGTATGATGGAAGGAAGGTACGCAGATTCCTAATTTCCCTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004450 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006102 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009117 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019752 GO:0030054 GO:0034641 GO:0042221 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072350 GO:0072524 GO:0098542 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

244

Amino Acids

28.17

Weight (kDa)

9.34

Isoelectric Point (pI)

21.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	73 - 231	4.9e-13	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	190
AcoI	YGGCCR	1 cut(s)	573
AcsI	RAATTY	1 cut(s)	167
AcuI	CTGAAG	1 cut(s)	701
AfaI	GTAC	6 cut(s)	8, 140, 218, 349, 581, 705
AgsI	TTSAA	3 cut(s)	116, 283, 329
AjnI	CCWGG	3 cut(s)	102, 397, 478
AluBI	AGCT	4 cut(s)	260, 412, 532, 632
AluI	AGCT	4 cut(s)	260, 412, 532, 632
Alw26I	GTCTC	1 cut(s)	478
AoxI	GGCC	1 cut(s)	573
ApoI	RAATTY	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	476
AsuHPI	GGTGA	1 cut(s)	452
AsuII	TTCGAA	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	476
BalI	TGGCCA	1 cut(s)	575
BanII	GRGCYC	1 cut(s)	652
BbsI	GAAGAC	3 cut(s)	68, 433, 530
BbvCI	CCTCAGC	1 cut(s)	123
BccI	CCATC	3 cut(s)	46, 605, 686
BciT130I	CCWGG	3 cut(s)	104, 399, 480
BcoDI	GTCTC	1 cut(s)	478
BfaI	CTAG	1 cut(s)	660
Bme1390I	CCNGG	3 cut(s)	104, 399, 480
Bme18I	GGWCC	1 cut(s)	476
BmgT120I	GGNCC	1 cut(s)	476
BmrFI	CCNGG	3 cut(s)	104, 399, 480
BmsI	GCATC	2 cut(s)	79, 201
BoxI	GACNNNNGTC	1 cut(s)	72
BpiI	GAAGAC	3 cut(s)	68, 433, 530
BpmI	CTGGAG	2 cut(s)	234, 554
Bpu10I	CCTNAGC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	119
BsaBI	GATNNNNATC	1 cut(s)	447
BsaJI	CCNNGG	3 cut(s)	70, 397, 479
BsaXI	ACNNNNNCTCC	2 cut(s)	232, 262
Bse1I	ACTGG	1 cut(s)	349
Bse8I	GATNNNNATC	1 cut(s)	447
BseBI	CCWGG	3 cut(s)	104, 399, 480
BseDI	CCNNGG	3 cut(s)	70, 397, 479
BseGI	GGATG	4 cut(s)	94, 381, 523, 597
BseJI	GATNNNNATC	1 cut(s)	447
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	349
BseRI	GAGGAG	2 cut(s)	307, 310
BshFI	GGCC	1 cut(s)	575
BslFI	GGGAC	3 cut(s)	27, 285, 322
BsmAI	GTCTC	1 cut(s)	478
BsmFI	GGGAC	3 cut(s)	27, 285, 322
BsnI	GGCC	1 cut(s)	575
Bsp119I	TTCGAA	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	652
Bsp1407I	TGTACA	1 cut(s)	579
Bsp143I	GATC	2 cut(s)	228, 442
BspACI	CCGC	1 cut(s)	190
BspANI	GGCC	1 cut(s)	575
BspCNI	CTCAG	1 cut(s)	115
BspT104I	TTCGAA	1 cut(s)	164
BsrGI	TGTACA	1 cut(s)	579
BsrI	ACTGG	1 cut(s)	349
BssECI	CCNNGG	3 cut(s)	70, 397, 479
BssMI	GATC	2 cut(s)	228, 442
BssT1I	CCWWGG	1 cut(s)	70
Bst2UI	CCWGG	3 cut(s)	104, 399, 480
Bst4CI	ACNGT	2 cut(s)	112, 352
Bst6I	CTCTTC	1 cut(s)	278
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstAUI	TGTACA	1 cut(s)	579
BstBI	TTCGAA	1 cut(s)	164
BstDEI	CTNAG	1 cut(s)	123
BstF5I	GGATG	4 cut(s)	94, 381, 523, 597
BstKTI	GATC	2 cut(s)	231, 445
BstMAI	GTCTC	1 cut(s)	478
BstMBI	GATC	2 cut(s)	228, 442
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstNI	CCWGG	3 cut(s)	104, 399, 480
BstNSI	RCATGY	1 cut(s)	434
BstPAI	GACNNNNGTC	1 cut(s)	72
BstSCI	CCNGG	3 cut(s)	102, 397, 478
BstV2I	GAAGAC	3 cut(s)	68, 433, 530
BsuRI	GGCC	1 cut(s)	575
BtsCI	GGATG	4 cut(s)	94, 381, 523, 597
BtsIMutI	CAGTG	2 cut(s)	93, 585
Cfr13I	GGNCC	1 cut(s)	476
CsiI	ACCWGGT	1 cut(s)	102
Csp6I	GTAC	6 cut(s)	7, 139, 217, 348, 580, 704
CviAII	CATG	3 cut(s)	431, 577, 622
CviJI	RGCY	9 cut(s)	29, 260, 402, 412, 532, 575, 617, 632, 650
CviKI_1	RGCY	9 cut(s)	29, 260, 402, 412, 532, 575, 617, 632, 650
CviQI	GTAC	6 cut(s)	7, 139, 217, 348, 580, 704
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	2 cut(s)	230, 444
DpnII	GATC	2 cut(s)	228, 442
EaeI	YGGCCR	1 cut(s)	573
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	652
Eco47I	GGWCC	1 cut(s)	476
Eco57I	CTGAAG	1 cut(s)	701
EcoO109I	RGGNCCY	1 cut(s)	476
EcoRII	CCWGG	3 cut(s)	102, 397, 478
EcoT14I	CCWWGG	1 cut(s)	70
EcoT22I	ATGCAT	1 cut(s)	422
EcoT38I	GRGCYC	1 cut(s)	652
ErhI	CCWWGG	1 cut(s)	70
FaeI	CATG	3 cut(s)	434, 580, 625
FaiI	YATR	8 cut(s)	266, 290, 418, 432, 462, 578, 623, 690
FalI	AAGNNNNNCTT	2 cut(s)	418, 450
FaqI	GGGAC	3 cut(s)	27, 285, 322
FatI	CATG	3 cut(s)	430, 576, 621
FokI	GGATG	4 cut(s)	101, 368, 530, 584
FriOI	GRGCYC	1 cut(s)	652
FspBI	CTAG	1 cut(s)	660
GsuI	CTGGAG	2 cut(s)	234, 554
HaeIII	GGCC	1 cut(s)	575
Hin1II	CATG	3 cut(s)	434, 580, 625
HinfI	GANTC	4 cut(s)	130, 298, 593, 711
HphI	GGTGA	1 cut(s)	452
Hpy166II	GTNNAC	1 cut(s)	541
Hpy188I	TCNGA	2 cut(s)	359, 681
Hpy188III	TCNNGA	2 cut(s)	86, 251
Hpy8I	GTNNAC	1 cut(s)	541
HpyAV	CCTTC	4 cut(s)	262, 503, 690, 694
HpyCH4III	ACNGT	2 cut(s)	112, 352
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	7 cut(s)	239, 375, 420, 464, 503, 569, 611
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	3 cut(s)	434, 580, 625
Kzo9I	GATC	2 cut(s)	228, 442
LweI	GCATC	2 cut(s)	79, 201
MabI	ACCWGGT	1 cut(s)	102
MaeI	CTAG	1 cut(s)	660
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	2 cut(s)	230, 444
MboI	GATC	2 cut(s)	228, 442
MboII	GAAGA	5 cut(s)	68, 295, 438, 535, 694
MhlI	GDGCHC	1 cut(s)	652
MlsI	TGGCCA	1 cut(s)	575
MluCI	AATT	5 cut(s)	47, 167, 366, 491, 717
MluNI	TGGCCA	1 cut(s)	575
MlyI	GAGTC	3 cut(s)	124, 307, 602
MnlI	CCTC	8 cut(s)	90, 118, 285, 288, 396, 467, 529, 550
Mox20I	TGGCCA	1 cut(s)	575
Mph1103I	ATGCAT	1 cut(s)	422
MscI	TGGCCA	1 cut(s)	575
MseI	TTAA	1 cut(s)	276
MslI	CAYNNNNRTG	1 cut(s)	87
Msp20I	TGGCCA	1 cut(s)	575
MspR9I	CCNGG	3 cut(s)	104, 399, 480
MvaI	CCWGG	3 cut(s)	104, 399, 480
MwoI	GCNNNNNNNGC	1 cut(s)	461
NdeII	GATC	2 cut(s)	228, 442
NlaIII	CATG	3 cut(s)	434, 580, 625
NsiI	ATGCAT	1 cut(s)	422
NspI	RCATGY	1 cut(s)	434
NspV	TTCGAA	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	711
PleI	GAGTC	3 cut(s)	124, 306, 601
PpsI	GAGTC	3 cut(s)	124, 306, 601
PpuMI	RGGWCCY	1 cut(s)	476
PshAI	GACNNNNGTC	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	476
Psp6I	CCWGG	3 cut(s)	102, 397, 478
PspGI	CCWGG	3 cut(s)	102, 397, 478
PspPI	GGNCC	1 cut(s)	476
PspPPI	RGGWCCY	1 cut(s)	476
RsaI	GTAC	6 cut(s)	8, 140, 218, 349, 581, 705
RsaNI	GTAC	6 cut(s)	7, 139, 217, 348, 580, 704
RseI	CAYNNNNRTG	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	276
Sau3AI	GATC	2 cut(s)	228, 442
Sau96I	GGNCC	1 cut(s)	476
SchI	GAGTC	3 cut(s)	124, 307, 602
ScrFI	CCNGG	3 cut(s)	104, 399, 480
SduI	GDGCHC	1 cut(s)	652
SexAI	ACCWGGT	1 cut(s)	102
SfaNI	GCATC	2 cut(s)	79, 201
SfuI	TTCGAA	1 cut(s)	164
SinI	GGWCC	1 cut(s)	476
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	5 cut(s)	47, 167, 366, 491, 717
SsiI	CCGC	1 cut(s)	190
SspI	AATATT	1 cut(s)	323
SspMI	CTAG	1 cut(s)	660
StyD4I	CCNGG	3 cut(s)	102, 397, 478
StyI	CCWWGG	1 cut(s)	70
TaaI	ACNGT	2 cut(s)	112, 352
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	2 cut(s)	164, 451
TasI	AATT	5 cut(s)	47, 167, 366, 491, 717
TatI	WGTACW	1 cut(s)	579
TfiI	GAWTC	1 cut(s)	711
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	2 cut(s)	100, 592
TspDTI	ATGAA	3 cut(s)	174, 270, 281
TspGWI	ACGGA	1 cut(s)	590
TspRI	CASTG	2 cut(s)	100, 592
VpaK11BI	GGWCC	1 cut(s)	476
XapI	RAATTY	1 cut(s)	167
XceI	RCATGY	1 cut(s)	434
XspI	CTAG	1 cut(s)	660
Zsp2I	ATGCAT	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.