Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

19510333 .. 19510880

Gene Structure 548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGAGGAACGCCCAATCGGAACCAGCCCAGATTCCGACGAGCTTCGGCCACGAGCTTAGGGCTTGCCTCCGTTGCCGCCTCGTTAAGACCTACGATCAGGTTAGGGATCGATCTCGTCTAGTAATGGATCCGAGTAGGAGTTGGGCTGCGCGGTGGCTCCGAATTGGTATGTATTGGTTCATACAAATTTTGTGTATTCCAAGATTTTTCTTTGACAGAATGATGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032044 GO:0032784 GO:0032991 GO:0034243 GO:0034641 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spt4

Protein Analysis

77

Amino Acids

9.26

Weight (kDa)

10.69

Isoelectric Point (pI)

77.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	151
AciI	CCGC	2 cut(s)	76, 151
AclWI	GGATC	3 cut(s)	114, 122, 135
AcoI	YGGCCR	1 cut(s)	46
AcsI	RAATTY	1 cut(s)	186
AluBI	AGCT	2 cut(s)	42, 55
AluI	AGCT	2 cut(s)	42, 55
AlwI	GGATC	3 cut(s)	114, 122, 135
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	151
BamHI	GGATCC	1 cut(s)	127
BauI	CACGAG	1 cut(s)	50
BbvI	GCAGC	1 cut(s)	133
BfaI	CTAG	1 cut(s)	119
BisI	GCNGC	2 cut(s)	76, 147
BlsI	GCNGC	2 cut(s)	77, 148
BmiI	GGNNCC	3 cut(s)	21, 129, 158
BmsI	GCATC	1 cut(s)	213
Bpu10I	CCTNAGC	1 cut(s)	56
Bsa29I	ATCGAT	1 cut(s)	109
BseCI	ATCGAT	1 cut(s)	109
BseXI	GCAGC	1 cut(s)	133
Bsh1236I	CGCG	1 cut(s)	151
BshFI	GGCC	1 cut(s)	48
BshVI	ATCGAT	1 cut(s)	109
BsnI	GGCC	1 cut(s)	48
Bsp143I	GATC	4 cut(s)	94, 106, 110, 127
BspACI	CCGC	2 cut(s)	76, 151
BspANI	GGCC	1 cut(s)	48
BspDI	ATCGAT	1 cut(s)	109
BspFNI	CGCG	1 cut(s)	151
BspLI	GGNNCC	3 cut(s)	21, 129, 158
BspPI	GGATC	3 cut(s)	114, 122, 135
BssMI	GATC	4 cut(s)	94, 106, 110, 127
BssSI	CACGAG	1 cut(s)	50
Bst2BI	CACGAG	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	64
BstDEI	CTNAG	1 cut(s)	56
BstFNI	CGCG	1 cut(s)	151
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	4 cut(s)	97, 109, 113, 130
BstMBI	GATC	4 cut(s)	94, 106, 110, 127
BstMWI	GCNNNNNNNGC	1 cut(s)	72
BstUI	CGCG	1 cut(s)	151
BstV1I	GCAGC	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
Bsu15I	ATCGAT	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	48
BsuTUI	ATCGAT	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	64
CfoI	GCGC	1 cut(s)	151
ClaI	ATCGAT	1 cut(s)	109
CviJI	RGCY	7 cut(s)	26, 42, 48, 55, 62, 146, 157
CviKI_1	RGCY	7 cut(s)	26, 42, 48, 55, 62, 146, 157
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	4 cut(s)	96, 108, 112, 129
DpnII	GATC	4 cut(s)	94, 106, 110, 127
EaeI	YGGCCR	1 cut(s)	46
EcoT22I	ATGCAT	1 cut(s)	228
FaiI	YATR	2 cut(s)	170, 182
Fnu4HI	GCNGC	2 cut(s)	76, 147
Fsp4HI	GCNGC	2 cut(s)	76, 147
FspBI	CTAG	1 cut(s)	119
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	2 cut(s)	76, 147
HaeIII	GGCC	1 cut(s)	48
HhaI	GCGC	1 cut(s)	151
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HinfI	GANTC	1 cut(s)	31
Hpy188I	TCNGA	4 cut(s)	19, 36, 132, 161
Hpy99I	CGWCG	1 cut(s)	40
HpyCH4V	TGCA	1 cut(s)	226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	72
HpyF3I	CTNAG	1 cut(s)	56
HspAI	GCGC	1 cut(s)	149
Kzo9I	GATC	4 cut(s)	94, 106, 110, 127
LmnI	GCTCC	1 cut(s)	162
LpnPI	CCDG	3 cut(s)	36, 41, 83
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	1 cut(s)	213
MaeI	CTAG	1 cut(s)	119
MalI	GATC	4 cut(s)	96, 108, 112, 129
MboI	GATC	4 cut(s)	94, 106, 110, 127
MflI	RGATCY	1 cut(s)	127
MluCI	AATT	2 cut(s)	162, 186
MmeI	TCCRAC	1 cut(s)	59
MnlI	CCTC	2 cut(s)	77, 89
Mph1103I	ATGCAT	1 cut(s)	228
MseI	TTAA	1 cut(s)	84
MvnI	CGCG	1 cut(s)	151
MwoI	GCNNNNNNNGC	1 cut(s)	72
NdeII	GATC	4 cut(s)	94, 106, 110, 127
NlaIV	GGNNCC	3 cut(s)	21, 129, 158
NsiI	ATGCAT	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	2 cut(s)	77, 148
PspN4I	GGNNCC	3 cut(s)	21, 129, 158
PsuI	RGATCY	1 cut(s)	127
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	2 cut(s)	76, 147
Sau3AI	GATC	4 cut(s)	94, 106, 110, 127
SetI	ASST	4 cut(s)	44, 57, 92, 102
SfaNI	GCATC	1 cut(s)	213
Sse9I	AATT	2 cut(s)	162, 186
SsiI	CCGC	2 cut(s)	76, 151
SspMI	CTAG	1 cut(s)	119
TaqI	TCGA	1 cut(s)	109
TasI	AATT	2 cut(s)	162, 186
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TseI	GCWGC	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	169
TspGWI	ACGGA	1 cut(s)	59
XapI	RAATTY	1 cut(s)	186
XspI	CTAG	1 cut(s)	119
Zsp2I	ATGCAT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.