pycom09g19050

PPR repeat

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
N/A
Physical Location & Seq
Forward (+)
19841466 .. 19841924
459 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 336 bp
ATGGTCGAGCATTTGTCTGGGAAAAGTTTAGAGCACAGTGGAGTGCATGTTCTTCTTCCAAACATGTACGCCTCCACCAACCAGTGGGACGATGTGGTTCGCAGTACTTGCTTTTATGCCTTTCCTTCTTACTTTCCTGAGCGAGGAAGGGAACCACTACTTCGGATGCGGCTGTCGGATAGGGCATCAGGAAGAACATATGGAAAAGAGAACCTGTTCTGGGATGTAGCTCAGTCGAAGCCAATGGCGAGGTTTTTGAGTTTGTCGCTGGAGATAGGTCGCGTGTGTTCATGGACTATATCATGTTGGTGTCACTTCCGATTGATAAGCATTTGA

Protein Analysis

112

Amino Acids

12.88

Weight (kDa)

8.82

Isoelectric Point (pI)

38.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 84
AccII CGCG 1 cut(s) 282
AciI CCGC 1 cut(s) 169
AfaI GTAC 2 cut(s) 68, 106
AfiI CCNNNNNNNGG 3 cut(s) 84, 143, 220
AflIII ACRYGT 1 cut(s) 63
AloI GAACNNNNNNTCC 2 cut(s) 33, 65
AluBI AGCT 1 cut(s) 230
AluI AGCT 1 cut(s) 230
Alw21I GWGCWC 1 cut(s) 36
Asp700I GAANNNNTTC 1 cut(s) 215
Bbv12I GWGCWC 1 cut(s) 36
BisI GCNGC 1 cut(s) 170
BlsI GCNGC 1 cut(s) 171
BmcAI AGTACT 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 153
BmsI GCATC 2 cut(s) 156, 194
BpmI CTGGAG 1 cut(s) 290
Bpu10I CCTNAGC 1 cut(s) 138
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bsc4I CCNNNNNNNGG 3 cut(s) 84, 143, 220
Bse1I ACTGG 1 cut(s) 82
BseGI GGATG 2 cut(s) 171, 229
BseLI CCNNNNNNNGG 3 cut(s) 84, 143, 220
BseMII CTCAG 2 cut(s) 129, 245
BseNI ACTGG 1 cut(s) 82
Bsh1236I CGCG 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 36
BslFI GGGAC 1 cut(s) 101
BslI CCNNNNNNNGG 3 cut(s) 84, 143, 220
BsmFI GGGAC 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 36
BspACI CCGC 1 cut(s) 169
BspCNI CTCAG 2 cut(s) 130, 244
BspFNI CGCG 1 cut(s) 282
BspLI GGNNCC 1 cut(s) 153
BsrI ACTGG 1 cut(s) 82
Bst4CI ACNGT 1 cut(s) 38
BstAPI GCANNNNNTGC 1 cut(s) 108
BstDEI CTNAG 2 cut(s) 138, 231
BstENI CCTNNNNNAGG 1 cut(s) 141
BstF5I GGATG 2 cut(s) 171, 229
BstFNI CGCG 1 cut(s) 282
BstMWI GCNNNNNNNGC 1 cut(s) 108
BstNSI RCATGY 2 cut(s) 50, 67
BstUI CGCG 1 cut(s) 282
BtsCI GGATG 2 cut(s) 171, 229
BtsIMutI CAGTG 2 cut(s) 43, 89
Csp6I GTAC 2 cut(s) 67, 105
CviAII CATG 4 cut(s) 47, 64, 291, 303
CviJI RGCY 3 cut(s) 172, 230, 241
CviKI_1 RGCY 3 cut(s) 172, 230, 241
CviQI GTAC 2 cut(s) 67, 105
DdeI CTNAG 2 cut(s) 138, 231
EcoNI CCTNNNNNAGG 1 cut(s) 141
FaeI CATG 4 cut(s) 50, 67, 294, 306
FaiI YATR 8 cut(s) 48, 65, 117, 199, 201, 292, 299, 304
FaqI GGGAC 1 cut(s) 101
FatI CATG 4 cut(s) 46, 63, 290, 302
FauNDI CATATG 1 cut(s) 199
Fnu4HI GCNGC 1 cut(s) 170
FokI GGATG 2 cut(s) 178, 236
Fsp4HI GCNGC 1 cut(s) 170
GluI GCNGC 1 cut(s) 170
GsuI CTGGAG 1 cut(s) 290
Hin1II CATG 4 cut(s) 50, 67, 294, 306
Hpy188I TCNGA 3 cut(s) 165, 178, 320
Hpy188III TCNNGA 2 cut(s) 137, 189
HpyAV CCTTC 2 cut(s) 135, 141
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4V TGCA 1 cut(s) 46
HpyF10VI GCNNNNNNNGC 1 cut(s) 108
HpyF3I CTNAG 2 cut(s) 138, 231
Hsp92II CATG 4 cut(s) 50, 67, 294, 306
LpnPI CCDG 7 cut(s) 3, 95, 150, 174, 205, 227, 254
LweI GCATC 2 cut(s) 156, 194
MaeIII GTNAC 1 cut(s) 311
MboII GAAGA 3 cut(s) 44, 47, 204
MhlI GDGCHC 1 cut(s) 36
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 3 cut(s) 82, 137, 243
MroXI GAANNNNTTC 1 cut(s) 215
MslI CAYNNNNRTG 1 cut(s) 307
MvnI CGCG 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 108
NdeI CATATG 1 cut(s) 199
NlaIII CATG 4 cut(s) 50, 67, 294, 306
NlaIV GGNNCC 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 311
NspI RCATGY 2 cut(s) 50, 67
PciI ACATGT 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 215
PflMI CCANNNNNTGG 1 cut(s) 84
PkrI GCNGC 1 cut(s) 171
PscI ACATGT 1 cut(s) 63
PspN4I GGNNCC 1 cut(s) 153
RsaI GTAC 2 cut(s) 68, 106
RsaNI GTAC 2 cut(s) 67, 105
RseI CAYNNNNRTG 1 cut(s) 307
SatI GCNGC 1 cut(s) 170
ScaI AGTACT 1 cut(s) 106
SduI GDGCHC 1 cut(s) 36
SetI ASST 4 cut(s) 216, 232, 254, 280
SfaNI GCATC 2 cut(s) 156, 194
SmiMI CAYNNNNRTG 1 cut(s) 307
SsiI CCGC 1 cut(s) 169
TaaI ACNGT 1 cut(s) 38
TaqI TCGA 2 cut(s) 6, 236
TatI WGTACW 1 cut(s) 104
TauI GCSGC 1 cut(s) 172
TscAI CASTG 2 cut(s) 43, 89
TseFI GTSAC 1 cut(s) 311
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 1 cut(s) 279
TspRI CASTG 2 cut(s) 43, 89
Van91I CCANNNNNTGG 1 cut(s) 84
XagI CCTNNNNNAGG 1 cut(s) 141
XceI RCATGY 2 cut(s) 50, 67
XmnI GAANNNNTTC 1 cut(s) 215
ZrmI AGTACT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.