Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

20063773 .. 20064051

Gene Structure 279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g19270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGTCATTAATCCCCACAAGAACCCTATTTCCTCATCACTATCAACAAGTAGAGCCGTTTGCAGATAACTCCTCTCCGCCTTCATCAGCACCTTTTAATTTTGGTAATTATCATGCGAACGGCTCTTCGTCGTCTCTTACAAATGCTACTAGTACCACTACCCGCCTTGTTCATCCCGAAAGGCGGTTTTGCTCTCCGGCAACCGGTTCTGCTTTGTTAGCTGACCATGGCCTTCTTCAAGACATAGTCCCCTCTCATATGCTTAAGCAAGAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043207 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

93

Amino Acids

10.05

Weight (kDa)

6.56

Isoelectric Point (pI)

71.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	77, 163, 184
AfaI	GTAC	1 cut(s)	154
AfiI	CCNNNNNNNGG	2 cut(s)	183, 203
AflII	CTTAAG	1 cut(s)	263
AgeI	ACCGGT	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	239
AhlI	ACTAGT	1 cut(s)	149
AloI	GAACNNNNNNTCC	2 cut(s)	13, 45
AluBI	AGCT	1 cut(s)	221
AluI	AGCT	1 cut(s)	221
Alw26I	GTCTC	1 cut(s)	138
AoxI	GGCC	1 cut(s)	229
AseI	ATTAAT	1 cut(s)	8
AsiGI	ACCGGT	1 cut(s)	203
BceAI	ACGGC	2 cut(s)	40, 136
BcoDI	GTCTC	1 cut(s)	138
BcuI	ACTAGT	1 cut(s)	149
BfaI	CTAG	1 cut(s)	150
BfrI	CTTAAG	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	226
BsaWI	WCCGGW	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	2 cut(s)	183, 203
Bse118I	RCCGGY	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	2 cut(s)	183, 203
BseRI	GAGGAG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	231
BshTI	ACCGGT	1 cut(s)	203
BsiSI	CCGG	2 cut(s)	197, 204
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	2 cut(s)	183, 203
BsmAI	GTCTC	1 cut(s)	138
BsmBI	CGTCTC	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	233
BsnI	GGCC	1 cut(s)	231
Bsp19I	CCATGG	1 cut(s)	226
BspACI	CCGC	3 cut(s)	77, 163, 184
BspANI	GGCC	1 cut(s)	231
BspQI	GCTCTTC	1 cut(s)	130
BspTI	CTTAAG	1 cut(s)	263
BsrFI	RCCGGY	1 cut(s)	203
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	226
BssT1I	CCWWGG	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	130
BstAFI	CTTAAG	1 cut(s)	263
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	1 cut(s)	172
BstMAI	GTCTC	1 cut(s)	138
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BsuRI	GGCC	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	172
Cfr10I	RCCGGY	1 cut(s)	203
Csp6I	GTAC	1 cut(s)	153
CspAI	ACCGGT	1 cut(s)	203
CviAII	CATG	2 cut(s)	113, 227
CviJI	RGCY	4 cut(s)	55, 123, 221, 231
CviKI_1	RGCY	4 cut(s)	55, 123, 221, 231
CviQI	GTAC	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
EciI	GGCGGA	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	226
Esp3I	CGTCTC	1 cut(s)	138
FaeI	CATG	2 cut(s)	116, 230
FaiI	YATR	5 cut(s)	114, 228, 245, 258, 260
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	2 cut(s)	112, 226
FauI	CCCGC	1 cut(s)	170
FauNDI	CATATG	1 cut(s)	258
FokI	GGATG	1 cut(s)	159
FspBI	CTAG	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	2 cut(s)	197, 204
Hin1II	CATG	2 cut(s)	116, 230
HpaII	CCGG	2 cut(s)	197, 204
Hpy188III	TCNNGA	2 cut(s)	176, 239
Hpy99I	CGWCG	1 cut(s)	133
HpyAV	CCTTC	2 cut(s)	90, 242
HpyCH4V	TGCA	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
Hsp92II	CATG	2 cut(s)	116, 230
LguI	GCTCTTC	1 cut(s)	130
LpnPI	CCDG	2 cut(s)	210, 217
MaeI	CTAG	1 cut(s)	150
MboII	GAAGA	2 cut(s)	117, 227
MluCI	AATT	2 cut(s)	97, 106
MnlI	CCTC	3 cut(s)	42, 82, 262
MseI	TTAA	3 cut(s)	8, 96, 264
MspCI	CTTAAG	1 cut(s)	263
MspI	CCGG	2 cut(s)	197, 204
MwoI	GCNNNNNNNGC	1 cut(s)	218
NcoI	CCATGG	1 cut(s)	226
NdeI	CATATG	1 cut(s)	258
NlaIII	CATG	2 cut(s)	116, 230
PciSI	GCTCTTC	1 cut(s)	130
PflFI	GACNNNGTC	1 cut(s)	245
PinAI	ACCGGT	1 cut(s)	203
PshBI	ATTAAT	1 cut(s)	8
PsyI	GACNNNGTC	1 cut(s)	245
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
SapI	GCTCTTC	1 cut(s)	130
SaqAI	TTAA	3 cut(s)	8, 96, 264
SetI	ASST	2 cut(s)	94, 223
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
SpeI	ACTAGT	1 cut(s)	149
Sse9I	AATT	2 cut(s)	97, 106
SsiI	CCGC	3 cut(s)	77, 163, 184
SspMI	CTAG	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	226
TasI	AATT	2 cut(s)	97, 106
Tru1I	TTAA	3 cut(s)	8, 96, 264
Tru9I	TTAA	3 cut(s)	8, 96, 264
TspDTI	ATGAA	2 cut(s)	72, 161
Tth111I	GACNNNGTC	1 cut(s)	245
Vha464I	CTTAAG	1 cut(s)	263
VspI	ATTAAT	1 cut(s)	8
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.