pycom09g19720
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
N/A
Physical Location & Seq
Forward (+)
20561857 .. 20562290
434 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 378 bp
ATGGACGTGAATGTTTTTCCAACGCTTGTGTGTGGGTGGACTTGGGAGGAGAACAAGTTGTTCGAGCTGGCTTTGGCAGTGGTTGACGAGGAAGATCCACAGCGCTGGGACGTAGTTGCATCCTTGGTCGGAGGGAAAAAGAGTGCAGAGGATGTCCAGAAACATTATGTCATTCTTTTGGAGGAGTTAATTATGTTCAAGATCGATCATTGTACTCACTCCGTGTGCTGGACTGACGAAACTAACAAGTATGTGAAATCTTTGTGGATTAAGGTCCTTGATTGCTGCAAAAAATGCTTTTATTTGCTTTTCATTCATTGGTTTTCACATGTAAATTGGACAGCTACTAGAACTCGTTCCTACCTTCCTGTTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

126

Amino Acids

14.8

Weight (kDa)

5.92

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding_2 PF23082 13 - 56 1e-05 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 89
AdeI CACNNNGTG 1 cut(s) 223
AfaI GTAC 1 cut(s) 214
AfeI AGCGCT 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 228
AflIII ACRYGT 1 cut(s) 328
AgsI TTSAA 1 cut(s) 199
AjiI CACGTC 1 cut(s) 7
AluBI AGCT 2 cut(s) 67, 344
AluI AGCT 2 cut(s) 67, 344
AlwI GGATC 1 cut(s) 89
Aor51HI AGCGCT 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 285
Asp700I GAANNNNTTC 1 cut(s) 355
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 274
AvaII GGWCC 1 cut(s) 274
BbvI GCAGC 1 cut(s) 272
BfaI CTAG 1 cut(s) 348
BfoI RGCGCY 1 cut(s) 106
BisI GCNGC 1 cut(s) 286
BlsI GCNGC 1 cut(s) 287
Bme18I GGWCC 1 cut(s) 274
BmgBI CACGTC 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 274
BmsI GCATC 1 cut(s) 128
Bsa29I ATCGAT 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 123
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bsc4I CCNNNNNNNGG 1 cut(s) 228
BseCI ATCGAT 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 2 cut(s) 119, 157
BseLI CCNNNNNNNGG 1 cut(s) 228
BseRI GAGGAG 2 cut(s) 62, 197
BseXI GCAGC 1 cut(s) 272
BseYI CCCAGC 1 cut(s) 105
BsgI GTGCAG 1 cut(s) 165
BshVI ATCGAT 1 cut(s) 204
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 228
BsmFI GGGAC 1 cut(s) 122
Bsp143I GATC 3 cut(s) 94, 201, 205
BspDI ATCGAT 1 cut(s) 204
BspPI GGATC 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 3 cut(s) 94, 201, 205
BssT1I CCWWGG 1 cut(s) 123
BstAPI GCANNNNNTGC 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 69
BstF5I GGATG 2 cut(s) 119, 157
BstH2I RGCGCY 1 cut(s) 106
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 3 cut(s) 97, 204, 208
BstMBI GATC 3 cut(s) 94, 201, 205
BstMWI GCNNNNNNNGC 1 cut(s) 294
BstNSI RCATGY 1 cut(s) 332
BstV1I GCAGC 1 cut(s) 272
BstX2I RGATCY 1 cut(s) 94
BstXI CCANNNNNNTGG 1 cut(s) 105
BstYI RGATCY 1 cut(s) 94
Bsu15I ATCGAT 1 cut(s) 204
BsuTUI ATCGAT 1 cut(s) 204
BtrI CACGTC 1 cut(s) 7
BtsCI GGATG 2 cut(s) 119, 157
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 69
CfoI GCGC 1 cut(s) 105
Cfr13I GGNCC 1 cut(s) 274
ClaI ATCGAT 1 cut(s) 204
Csp6I GTAC 1 cut(s) 213
CviAII CATG 1 cut(s) 329
CviJI RGCY 3 cut(s) 67, 71, 344
CviKI_1 RGCY 3 cut(s) 67, 71, 344
CviQI GTAC 1 cut(s) 213
DpnI GATC 3 cut(s) 96, 203, 207
DpnII GATC 3 cut(s) 94, 201, 205
DraIII CACNNNGTG 1 cut(s) 223
Eco130I CCWWGG 1 cut(s) 123
Eco47I GGWCC 1 cut(s) 274
Eco47III AGCGCT 1 cut(s) 104
EcoO109I RGGNCCY 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 1 cut(s) 332
FaiI YATR 4 cut(s) 168, 194, 252, 330
FaqI GGGAC 1 cut(s) 122
FatI CATG 1 cut(s) 328
Fnu4HI GCNGC 1 cut(s) 286
FokI GGATG 2 cut(s) 106, 164
Fsp4HI GCNGC 1 cut(s) 286
FspBI CTAG 1 cut(s) 348
GlaI GCGC 1 cut(s) 104
GluI GCNGC 1 cut(s) 286
GsaI CCCAGC 1 cut(s) 109
HaeII RGCGCY 1 cut(s) 106
HhaI GCGC 1 cut(s) 105
Hin1II CATG 1 cut(s) 332
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
Hpy166II GTNNAC 2 cut(s) 39, 85
Hpy188I TCNGA 1 cut(s) 131
Hpy188III TCNNGA 2 cut(s) 157, 199
Hpy8I GTNNAC 2 cut(s) 39, 85
HpyAV CCTTC 1 cut(s) 374
HpyCH4IV ACGT 2 cut(s) 6, 111
HpyCH4V TGCA 3 cut(s) 119, 146, 288
HpyF10VI GCNNNNNNNGC 1 cut(s) 294
HpySE526I ACGT 2 cut(s) 6, 111
Hsp92II CATG 1 cut(s) 332
HspAI GCGC 1 cut(s) 103
Kzo9I GATC 3 cut(s) 94, 201, 205
LpnPI CCDG 4 cut(s) 53, 91, 170, 214
Lsp1109I GCAGC 1 cut(s) 272
LweI GCATC 1 cut(s) 128
MaeI CTAG 1 cut(s) 348
MaeII ACGT 2 cut(s) 6, 111
MalI GATC 3 cut(s) 96, 203, 207
MboI GATC 3 cut(s) 94, 201, 205
MboII GAAGA 1 cut(s) 104
MflI RGATCY 1 cut(s) 94
MluCI AATT 2 cut(s) 189, 334
MmeI TCCRAC 2 cut(s) 44, 109
MnlI CCTC 5 cut(s) 40, 82, 125, 142, 175
MroXI GAANNNNTTC 1 cut(s) 355
MseI TTAA 2 cut(s) 188, 270
MwoI GCNNNNNNNGC 1 cut(s) 294
NdeII GATC 3 cut(s) 94, 201, 205
NlaIII CATG 1 cut(s) 332
NspI RCATGY 1 cut(s) 332
PciI ACATGT 1 cut(s) 328
PdmI GAANNNNTTC 1 cut(s) 355
PkrI GCNGC 1 cut(s) 287
PpuMI RGGWCCY 1 cut(s) 274
PscI ACATGT 1 cut(s) 328
Psp5II RGGWCCY 1 cut(s) 274
PspFI CCCAGC 1 cut(s) 105
PspPI GGNCC 1 cut(s) 274
PspPPI RGGWCCY 1 cut(s) 274
PsuI RGATCY 1 cut(s) 94
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SaqAI TTAA 2 cut(s) 188, 270
SatI GCNGC 1 cut(s) 286
Sau3AI GATC 3 cut(s) 94, 201, 205
Sau96I GGNCC 1 cut(s) 274
SetI ASST 6 cut(s) 9, 69, 114, 276, 346, 366
SfaNI GCATC 1 cut(s) 128
SinI GGWCC 1 cut(s) 274
Sse9I AATT 2 cut(s) 189, 334
SspMI CTAG 1 cut(s) 348
StyI CCWWGG 1 cut(s) 123
TaiI ACGT 2 cut(s) 9, 114
TaqI TCGA 2 cut(s) 63, 204
TasI AATT 2 cut(s) 189, 334
TatI WGTACW 1 cut(s) 212
Tru1I TTAA 2 cut(s) 188, 270
Tru9I TTAA 2 cut(s) 188, 270
TscAI CASTG 1 cut(s) 84
TseI GCWGC 1 cut(s) 285
TspDTI ATGAA 2 cut(s) 301, 305
TspGWI ACGGA 1 cut(s) 211
TspRI CASTG 1 cut(s) 84
VpaK11BI GGWCC 1 cut(s) 274
XceI RCATGY 1 cut(s) 332
XmnI GAANNNNTTC 1 cut(s) 355
XspI CTAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.