pycom10g00660

60S ribosomal protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
N/A
Physical Location & Seq
Forward (+)
661856 .. 662222
367 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 300 bp
ATGGAGATCGATCTCGTGGCAGGAAGTGAAAGCAAGAAGACGAAGTGCATTGCGCCCAAGTCCAATGATATCTATCTCAAGCTTCTCGTCAAGCTGTACCGTTTTCTTGTCCGAATGACTAGAAACAAGTTGAATGGAAATGACAACAAGATTGATGTGGTTGTAGGGACTGCCATTGATGACATTATGGTTTATGAAGTTCTGCAATTGAAGGTTACAACACTGAGGCTCACTGAGATTGTGGCAGTAGGAGAGTGCTTGACATTTGATCATCTTGCTTTGAGAGCACCATTGGGTTAG

Protein Analysis

100

Amino Acids

11.08

Weight (kDa)

8.6

Isoelectric Point (pI)

28.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L18 PF17135 3 - 45 6.5e-09 Ribosomal protein 60S L18 and 50S L18e
Ribosomal_L18 PF17135 44 - 99 7.4e-11 Ribosomal protein 60S L18 and 50S L18e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 98
AgsI TTSAA 2 cut(s) 133, 211
AluBI AGCT 2 cut(s) 82, 94
AluI AGCT 2 cut(s) 82, 94
Alw21I GWGCWC 1 cut(s) 289
AspLEI GCGC 1 cut(s) 55
BauI CACGAG 1 cut(s) 14
BbsI GAAGAC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 289
BclI TGATCA 1 cut(s) 268
BfaI CTAG 1 cut(s) 120
BpiI GAAGAC 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 62
Bsa29I ATCGAT 1 cut(s) 9
BsaBI GATNNNNATC 1 cut(s) 72
Bse3DI GCAATG 1 cut(s) 48
Bse8I GATNNNNATC 1 cut(s) 72
BseCI ATCGAT 1 cut(s) 9
BseJI GATNNNNATC 1 cut(s) 72
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 2 cut(s) 215, 225
BshVI ATCGAT 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 289
BslFI GGGAC 1 cut(s) 181
BsmFI GGGAC 1 cut(s) 181
Bsp1286I GDGCHC 1 cut(s) 289
Bsp143I GATC 3 cut(s) 6, 10, 268
BspCNI CTCAG 2 cut(s) 216, 226
BspDI ATCGAT 1 cut(s) 9
BsrDI GCAATG 1 cut(s) 48
BssMI GATC 3 cut(s) 6, 10, 268
BssSI CACGAG 1 cut(s) 14
Bst2BI CACGAG 1 cut(s) 14
Bst4CI ACNGT 1 cut(s) 101
BstDEI CTNAG 2 cut(s) 224, 234
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 3 cut(s) 9, 13, 271
BstMBI GATC 3 cut(s) 6, 10, 268
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstV2I GAAGAC 1 cut(s) 44
Bsu15I ATCGAT 1 cut(s) 9
BsuTUI ATCGAT 1 cut(s) 9
BtsIMutI CAGTG 2 cut(s) 221, 231
CfoI GCGC 1 cut(s) 55
ClaI ATCGAT 1 cut(s) 9
Csp6I GTAC 1 cut(s) 97
CviJI RGCY 3 cut(s) 82, 94, 229
CviKI_1 RGCY 3 cut(s) 82, 94, 229
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 2 cut(s) 224, 234
DpnI GATC 3 cut(s) 8, 12, 270
DpnII GATC 3 cut(s) 6, 10, 268
Eco32I GATATC 1 cut(s) 70
EcoRV GATATC 1 cut(s) 70
FaiI YATR 2 cut(s) 188, 195
FaqI GGGAC 1 cut(s) 181
FbaI TGATCA 1 cut(s) 268
FspBI CTAG 1 cut(s) 120
GlaI GCGC 1 cut(s) 54
HhaI GCGC 1 cut(s) 55
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HindIII AAGCTT 1 cut(s) 80
Hpy188I TCNGA 1 cut(s) 113
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4V TGCA 2 cut(s) 48, 205
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
HpyF3I CTNAG 2 cut(s) 224, 234
HspAI GCGC 1 cut(s) 53
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 3 cut(s) 6, 10, 268
LpnPI CCDG 1 cut(s) 6
MaeI CTAG 1 cut(s) 120
MaeIII GTNAC 1 cut(s) 214
MalI GATC 3 cut(s) 8, 12, 270
MboI GATC 3 cut(s) 6, 10, 268
MboII GAAGA 1 cut(s) 49
MfeI CAATTG 1 cut(s) 206
MhlI GDGCHC 1 cut(s) 289
MluCI AATT 1 cut(s) 206
MnlI CCTC 1 cut(s) 219
MunI CAATTG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 284
NdeII GATC 3 cut(s) 6, 10, 268
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
Sau3AI GATC 3 cut(s) 6, 10, 268
SduI GDGCHC 1 cut(s) 289
SetI ASST 3 cut(s) 84, 96, 216
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 1 cut(s) 206
SspMI CTAG 1 cut(s) 120
TaaI ACNGT 1 cut(s) 101
TaqI TCGA 1 cut(s) 9
TasI AATT 1 cut(s) 206
TscAI CASTG 2 cut(s) 228, 238
TspDTI ATGAA 1 cut(s) 210
TspRI CASTG 2 cut(s) 228, 238
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.