pycom10g00900

OPA3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
N/A
Physical Location & Seq
Forward (+)
978808 .. 980365
1558 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 402 bp
ATGGCGACTCTCGACCTCACCTCACAGTCAGACAACCTCAGTGCATCACGGTCCTCACCACCCTCCTCGACCTCACCTCAGACAACCTTTCCGTCTCTGATCTCTCTCTCGACTTCTCATCCCTCAGACCCTCACTGTTCCTTCACGGCACAGAGACAGCCACGGCCACCGGCGCCGCTCACATCTCTGATCTCTCTCGACTTTTTCATCCAGATTCCAGTGCATTGTGCACCGATTCTCCCCCAAATCAGGTTGCAACTTGCAACAGTTGCTTTGATATTTGAAGTACAAAGAAGTGCTAGGTCAGAAGCAAGAAAAGAGGAAGCACGCAAGCAAGAACTGGAGGACAAAGCGCAACAATCTTTTGTGAAGGAGCGCGGATTGATGAAAGCAAGTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OPA3

Protein Analysis

134

Amino Acids

14.62

Weight (kDa)

8.77

Isoelectric Point (pI)

74.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 172
AccBSI CCGCTC 1 cut(s) 178
AccII CGCG 1 cut(s) 378
AciI CCGC 2 cut(s) 176, 378
AcoI YGGCCR 1 cut(s) 164
AcyI GRCGYC 1 cut(s) 173
AfaI GTAC 2 cut(s) 288, 397
AfiI CCNNNNNNNGG 1 cut(s) 249
AgsI TTSAA 1 cut(s) 284
Alw21I GWGCWC 1 cut(s) 232
Alw26I GTCTC 2 cut(s) 99, 148
Alw44I GTGCAC 1 cut(s) 228
AoxI GGCC 1 cut(s) 164
ApaLI GTGCAC 1 cut(s) 228
AspLEI GCGC 3 cut(s) 175, 355, 378
AspS9I GGNCC 1 cut(s) 51
AsuHPI GGTGA 3 cut(s) 10, 48, 66
AvaII GGWCC 1 cut(s) 51
BaeGI GKGCMC 1 cut(s) 232
BanI GGYRCC 1 cut(s) 172
Bbv12I GWGCWC 1 cut(s) 232
BceAI ACGGC 2 cut(s) 162, 179
BcoDI GTCTC 2 cut(s) 99, 148
BfaI CTAG 1 cut(s) 300
BfoI RGCGCY 1 cut(s) 176
BisI GCNGC 1 cut(s) 176
BlsI GCNGC 1 cut(s) 177
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 51
BmiI GGNNCC 1 cut(s) 174
BmsI GCATC 1 cut(s) 53
BpmI CTGGAG 1 cut(s) 362
BsaHI GRCGYC 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 161
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bsc4I CCNNNNNNNGG 1 cut(s) 249
Bse118I RCCGGY 1 cut(s) 169
Bse1I ACTGG 2 cut(s) 218, 345
BseDI CCNNGG 1 cut(s) 161
BseGI GGATG 2 cut(s) 118, 207
BseLI CCNNNNNNNGG 1 cut(s) 249
BseMII CTCAG 3 cut(s) 52, 92, 138
BseNI ACTGG 2 cut(s) 218, 345
BseRI GAGGAG 1 cut(s) 55
BseSI GKGCMC 1 cut(s) 232
Bsh1236I CGCG 1 cut(s) 378
BshFI GGCC 1 cut(s) 166
BshNI GGYRCC 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 232
BsiSI CCGG 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 249
BsmAI GTCTC 2 cut(s) 99, 148
BsmBI CGTCTC 1 cut(s) 99
BsnI GGCC 1 cut(s) 166
Bsp1286I GDGCHC 1 cut(s) 232
Bsp143I GATC 2 cut(s) 99, 189
BspACI CCGC 2 cut(s) 176, 378
BspANI GGCC 1 cut(s) 166
BspCNI CTCAG 3 cut(s) 51, 91, 137
BspFNI CGCG 1 cut(s) 378
BspLI GGNNCC 1 cut(s) 174
BspT107I GGYRCC 1 cut(s) 172
BsrBI CCGCTC 1 cut(s) 178
BsrFI RCCGGY 1 cut(s) 169
BsrI ACTGG 2 cut(s) 218, 345
BssAI RCCGGY 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 161
BssMI GATC 2 cut(s) 99, 189
BssNI GRCGYC 1 cut(s) 173
Bst4CI ACNGT 4 cut(s) 27, 51, 137, 268
BstACI GRCGYC 1 cut(s) 173
BstAPI GCANNNNNTGC 1 cut(s) 269
BstC8I GCNNGC 2 cut(s) 328, 332
BstDEI CTNAG 3 cut(s) 38, 78, 124
BstDSI CCRYGG 1 cut(s) 161
BstF5I GGATG 2 cut(s) 118, 207
BstFNI CGCG 1 cut(s) 378
BstH2I RGCGCY 1 cut(s) 176
BstHHI GCGC 3 cut(s) 175, 355, 378
BstKTI GATC 2 cut(s) 102, 192
BstMAI GTCTC 2 cut(s) 99, 148
BstMBI GATC 2 cut(s) 99, 189
BstMWI GCNNNNNNNGC 2 cut(s) 172, 269
BstSLI GKGCMC 1 cut(s) 232
BstUI CGCG 1 cut(s) 378
BsuRI GGCC 1 cut(s) 166
BtgI CCRYGG 1 cut(s) 161
BtsCI GGATG 2 cut(s) 118, 207
BtsIMutI CAGTG 3 cut(s) 46, 133, 225
Cac8I GCNNGC 2 cut(s) 328, 332
CfoI GCGC 3 cut(s) 175, 355, 378
Cfr10I RCCGGY 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 51
Csp6I GTAC 2 cut(s) 287, 396
CviJI RGCY 2 cut(s) 160, 166
CviKI_1 RGCY 2 cut(s) 160, 166
CviQI GTAC 2 cut(s) 287, 396
DdeI CTNAG 3 cut(s) 38, 78, 124
DinI GGCGCC 1 cut(s) 174
DpnI GATC 2 cut(s) 101, 191
DpnII GATC 2 cut(s) 99, 189
EaeI YGGCCR 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 51
EgeI GGCGCC 1 cut(s) 174
EheI GGCGCC 1 cut(s) 174
Esp3I CGTCTC 1 cut(s) 99
Fnu4HI GCNGC 1 cut(s) 176
FokI GGATG 2 cut(s) 105, 194
Fsp4HI GCNGC 1 cut(s) 176
FspBI CTAG 1 cut(s) 300
GlaI GCGC 3 cut(s) 174, 354, 377
GluI GCNGC 1 cut(s) 176
GsuI CTGGAG 1 cut(s) 362
HaeII RGCGCY 1 cut(s) 176
HaeIII GGCC 1 cut(s) 166
HapII CCGG 1 cut(s) 170
HhaI GCGC 3 cut(s) 175, 355, 378
Hin1I GRCGYC 1 cut(s) 173
Hin6I GCGC 3 cut(s) 173, 353, 376
HinP1I GCGC 3 cut(s) 173, 353, 376
HinfI GANTC 3 cut(s) 7, 214, 235
HpaII CCGG 1 cut(s) 170
HphI GGTGA 3 cut(s) 10, 48, 66
Hpy166II GTNNAC 1 cut(s) 230
Hpy188I TCNGA 6 cut(s) 31, 81, 99, 127, 189, 307
Hpy188III TCNNGA 4 cut(s) 11, 109, 197, 211
Hpy8I GTNNAC 1 cut(s) 230
HpyAV CCTTC 2 cut(s) 151, 364
HpyCH4III ACNGT 4 cut(s) 27, 51, 137, 268
HpyCH4V TGCA 5 cut(s) 44, 223, 230, 256, 263
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 269
HpyF3I CTNAG 3 cut(s) 38, 78, 124
Hsp92I GRCGYC 1 cut(s) 173
HspAI GCGC 3 cut(s) 173, 353, 376
KasI GGCGCC 1 cut(s) 172
Kzo9I GATC 2 cut(s) 99, 189
LmnI GCTCC 1 cut(s) 373
LpnPI CCDG 5 cut(s) 183, 224, 231, 235, 326
LweI GCATC 1 cut(s) 53
MaeI CTAG 1 cut(s) 300
MalI GATC 2 cut(s) 101, 191
MbiI CCGCTC 1 cut(s) 178
MboI GATC 2 cut(s) 99, 189
MhlI GDGCHC 1 cut(s) 232
Mly113I GGCGCC 1 cut(s) 173
MspI CCGG 1 cut(s) 170
MvnI CGCG 1 cut(s) 378
MwoI GCNNNNNNNGC 2 cut(s) 172, 269
NarI GGCGCC 1 cut(s) 173
NdeII GATC 2 cut(s) 99, 189
NlaIV GGNNCC 1 cut(s) 174
PfeI GAWTC 2 cut(s) 214, 235
PkrI GCNGC 1 cut(s) 177
PluTI GGCGCC 1 cut(s) 176
PspN4I GGNNCC 1 cut(s) 174
PspPI GGNCC 1 cut(s) 51
RsaI GTAC 2 cut(s) 288, 397
RsaNI GTAC 2 cut(s) 287, 396
SatI GCNGC 1 cut(s) 176
Sau3AI GATC 2 cut(s) 99, 189
Sau96I GGNCC 1 cut(s) 51
SduI GDGCHC 1 cut(s) 232
SetI ASST 9 cut(s) 18, 23, 39, 74, 79, 89, 254, 305, 401
SfaNI GCATC 1 cut(s) 53
SfoI GGCGCC 1 cut(s) 174
SgrAI CRCCGGYG 1 cut(s) 169
SinI GGWCC 1 cut(s) 51
SsiI CCGC 2 cut(s) 176, 378
SspDI GGCGCC 1 cut(s) 172
SspMI CTAG 1 cut(s) 300
TaaI ACNGT 4 cut(s) 27, 51, 137, 268
TaqI TCGA 4 cut(s) 12, 68, 110, 198
TatI WGTACW 1 cut(s) 286
TauI GCSGC 1 cut(s) 178
TfiI GAWTC 2 cut(s) 214, 235
TscAI CASTG 3 cut(s) 46, 140, 225
TspDTI ATGAA 2 cut(s) 196, 401
TspGWI ACGGA 1 cut(s) 81
TspRI CASTG 3 cut(s) 46, 140, 225
VneI GTGCAC 1 cut(s) 228
VpaK11BI GGWCC 1 cut(s) 51
XspI CTAG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.