Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1120554 .. 1121691

Gene Structure 1138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGATTTCTGATGAAACTGGCCTTACTATCATGAACGAATGCGATTTTGACGATTATGTCTTGGGAAATCCTCACAATGTAAGCCATCAATGCAACAAAGCAATATCTCAAGCCAATCAGATAGTTGGTGAGTACATAAACAATTACGACGTGATTCTTGATGTTTGTTATCCATCTATAGTGGAGCAAGAGTTGAGACTGCGGAAAATGGCTACTAAGATAAGTGTTGGAGTTGATGTATGTATGACATTTGAAAGACGTTTTTATTTGAACCTTCCCGAAGTTCAGAAAGTCCTTCATGCAAATCGTACAAACTTGCCTTATCCATGGAGTATGTGCAGTCGCGTTCTTAATTACAGCGATACAGATGGTAGCATTAACATCCTTCCCTTGCTCACAAGGATAGTTCAAAACCAAATACCCGTTTGGGTTTTCAGTGGGGATCAAGATTCCGTTGTACCATTATTGGGTTCTCGGACACTGGTGCGTGAACTAGCACATGACCTAAAGTTCCCGATAACAGTCCCATACGGAGCTTGGTTCCACAAAGGCCAGGTGGGCGGTTGGGCTACAGAGTACGGAAATTTGTTGACGTTTGCCACAGTAAGGGGGGCTGCTCATATGGTACCCTATGCTCAACCTTCAAGAGCACTGCACCTCTTCAGTGCATTTGTTCGTGGTCGGAGACTGCCCAACACAGCGCATCCTTCCATTGACGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005618 GO:0005623 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0030312 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

241

Amino Acids

27.1

Weight (kDa)

6.23

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	1 - 227	6.6e-44	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	56
Acc65I	GGTACC	1 cut(s)	625
AccB1I	GGYRCC	1 cut(s)	625
AccII	CGCG	1 cut(s)	345
AciI	CCGC	2 cut(s)	202, 561
AclWI	GGATC	1 cut(s)	450
AcsI	RAATTY	1 cut(s)	583
AcuI	CTGAAG	1 cut(s)	646
AfaI	GTAC	5 cut(s)	134, 310, 459, 578, 627
AfiI	CCNNNNNNNGG	2 cut(s)	467, 606
AgsI	TTSAA	4 cut(s)	254, 271, 410, 645
AjiI	CACGTC	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	552
AluBI	AGCT	1 cut(s)	536
AluI	AGCT	1 cut(s)	536
Alw21I	GWGCWC	1 cut(s)	652
Alw26I	GTCTC	2 cut(s)	190, 679
AlwI	GGATC	1 cut(s)	450
AoxI	GGCC	2 cut(s)	19, 550
ApeKI	GCWGC	1 cut(s)	614
ApoI	RAATTY	1 cut(s)	583
Asp718I	GGTACC	1 cut(s)	625
AspLEI	GCGC	1 cut(s)	703
AsuHPI	GGTGA	1 cut(s)	140
BanI	GGYRCC	1 cut(s)	625
Bbv12I	GWGCWC	1 cut(s)	652
BbvI	GCAGC	1 cut(s)	601
BccI	CCATC	3 cut(s)	93, 181, 362
BciT130I	CCWGG	1 cut(s)	554
BcoDI	GTCTC	2 cut(s)	190, 679
BfaI	CTAG	1 cut(s)	494
BfmI	CTRYAG	2 cut(s)	177, 570
BglI	GCCNNNNNGGC	1 cut(s)	558
BisI	GCNGC	1 cut(s)	615
BlsI	GCNGC	1 cut(s)	616
Bme1390I	CCNGG	1 cut(s)	554
BmgBI	CACGTC	1 cut(s)	151
BmiI	GGNNCC	2 cut(s)	542, 627
BmrFI	CCNGG	1 cut(s)	554
BmsI	GCATC	1 cut(s)	712
BpuEI	CTTGAG	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	326
BsaXI	ACNNNNNCTCC	4 cut(s)	176, 206, 222, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	467, 606
Bse1I	ACTGG	2 cut(s)	22, 486
BseBI	CCWGG	1 cut(s)	554
BseDI	CCNNGG	1 cut(s)	326
BseGI	GGATG	2 cut(s)	381, 703
BseLI	CCNNNNNNNGG	2 cut(s)	467, 606
BseNI	ACTGG	2 cut(s)	22, 486
BseXI	GCAGC	1 cut(s)	601
BsgI	GTGCAG	2 cut(s)	358, 638
Bsh1236I	CGCG	1 cut(s)	345
BshFI	GGCC	2 cut(s)	21, 552
BshNI	GGYRCC	1 cut(s)	625
BsiHKAI	GWGCWC	1 cut(s)	652
BslFI	GGGAC	1 cut(s)	509
BslI	CCNNNNNNNGG	2 cut(s)	467, 606
BsmAI	GTCTC	2 cut(s)	190, 679
BsmFI	GGGAC	1 cut(s)	509
BsmI	GAATGC	1 cut(s)	44
BsnI	GGCC	2 cut(s)	21, 552
Bsp1286I	GDGCHC	1 cut(s)	652
Bsp143I	GATC	1 cut(s)	442
Bsp19I	CCATGG	1 cut(s)	326
BspACI	CCGC	2 cut(s)	202, 561
BspANI	GGCC	2 cut(s)	21, 552
BspFNI	CGCG	1 cut(s)	345
BspHI	TCATGA	1 cut(s)	30
BspLI	GGNNCC	2 cut(s)	542, 627
BspPI	GGATC	1 cut(s)	450
BspT107I	GGYRCC	1 cut(s)	625
BsrI	ACTGG	2 cut(s)	22, 486
BssECI	CCNNGG	1 cut(s)	326
BssMI	GATC	1 cut(s)	442
BssT1I	CCWWGG	1 cut(s)	326
Bst2UI	CCWGG	1 cut(s)	554
Bst4CI	ACNGT	2 cut(s)	523, 604
Bst6I	CTCTTC	1 cut(s)	665
BstDEI	CTNAG	1 cut(s)	216
BstDSI	CCRYGG	1 cut(s)	326
BstF5I	GGATG	2 cut(s)	381, 703
BstFNI	CGCG	1 cut(s)	345
BstHHI	GCGC	1 cut(s)	703
BstKTI	GATC	1 cut(s)	445
BstMAI	GTCTC	2 cut(s)	190, 679
BstMBI	GATC	1 cut(s)	442
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 558
BstNI	CCWGG	1 cut(s)	554
BstSCI	CCNGG	1 cut(s)	552
BstSFI	CTRYAG	2 cut(s)	177, 570
BstUI	CGCG	1 cut(s)	345
BstV1I	GCAGC	1 cut(s)	601
BsuRI	GGCC	2 cut(s)	21, 552
BtgI	CCRYGG	1 cut(s)	326
BtrI	CACGTC	1 cut(s)	151
BtsCI	GGATG	2 cut(s)	381, 703
BtsI	GCAGTG	1 cut(s)	650
BtsIMutI	CAGTG	4 cut(s)	442, 479, 650, 670
CciI	TCATGA	1 cut(s)	30
CfoI	GCGC	1 cut(s)	703
Csp6I	GTAC	5 cut(s)	133, 309, 458, 577, 626
CviAII	CATG	4 cut(s)	31, 299, 327, 500
CviJI	RGCY	8 cut(s)	21, 84, 113, 212, 536, 552, 569, 614
CviKI_1	RGCY	8 cut(s)	21, 84, 113, 212, 536, 552, 569, 614
CviQI	GTAC	5 cut(s)	133, 309, 458, 577, 626
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	1 cut(s)	444
DpnII	GATC	1 cut(s)	442
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
Eam1104I	CTCTTC	1 cut(s)	665
EarI	CTCTTC	1 cut(s)	665
Eco130I	CCWWGG	1 cut(s)	326
Eco57I	CTGAAG	1 cut(s)	646
EcoRII	CCWGG	1 cut(s)	552
EcoT14I	CCWWGG	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	326
FaeI	CATG	4 cut(s)	34, 302, 330, 503
FaqI	GGGAC	1 cut(s)	509
FatI	CATG	4 cut(s)	30, 298, 326, 499
FauNDI	CATATG	1 cut(s)	621
Fnu4HI	GCNGC	1 cut(s)	615
FokI	GGATG	2 cut(s)	368, 690
Fsp4HI	GCNGC	1 cut(s)	615
FspBI	CTAG	1 cut(s)	494
GlaI	GCGC	1 cut(s)	702
GluI	GCNGC	1 cut(s)	615
HaeIII	GGCC	2 cut(s)	21, 552
HhaI	GCGC	1 cut(s)	703
Hin1II	CATG	4 cut(s)	34, 302, 330, 503
Hin6I	GCGC	1 cut(s)	701
HinP1I	GCGC	1 cut(s)	701
HincII	GTYRAC	1 cut(s)	591
HindII	GTYRAC	1 cut(s)	591
HinfI	GANTC	2 cut(s)	154, 449
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	2 cut(s)	491, 591
Hpy188I	TCNGA	5 cut(s)	10, 120, 288, 477, 684
Hpy188III	TCNNGA	6 cut(s)	31, 158, 278, 446, 514, 645
Hpy8I	GTNNAC	2 cut(s)	491, 591
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	5 cut(s)	284, 305, 395, 651, 717
HpyCH4III	ACNGT	2 cut(s)	523, 604
HpyCH4IV	ACGT	3 cut(s)	150, 259, 593
HpyCH4V	TGCA	5 cut(s)	93, 302, 339, 655, 668
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 558
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	3 cut(s)	150, 259, 593
Hsp92II	CATG	4 cut(s)	34, 302, 330, 503
HspAI	GCGC	1 cut(s)	701
KpnI	GGTACC	1 cut(s)	629
Kzo9I	GATC	1 cut(s)	442
LmnI	GCTCC	2 cut(s)	184, 533
LpnPI	CCDG	4 cut(s)	3, 467, 539, 566
Lsp1109I	GCAGC	1 cut(s)	601
LweI	GCATC	1 cut(s)	712
MaeI	CTAG	1 cut(s)	494
MaeII	ACGT	3 cut(s)	150, 259, 593
MalI	GATC	1 cut(s)	444
MboI	GATC	1 cut(s)	442
MboII	GAAGA	1 cut(s)	652
MhlI	GDGCHC	1 cut(s)	652
MluCI	AATT	3 cut(s)	142, 352, 583
MmeI	TCCRAC	2 cut(s)	208, 662
MnlI	CCTC	2 cut(s)	81, 668
MseI	TTAA	2 cut(s)	351, 378
MspR9I	CCNGG	1 cut(s)	554
Mva1269I	GAATGC	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	554
MvnI	CGCG	1 cut(s)	345
MwoI	GCNNNNNNNGC	2 cut(s)	90, 558
NcoI	CCATGG	1 cut(s)	326
NdeI	CATATG	1 cut(s)	621
NdeII	GATC	1 cut(s)	442
NlaIII	CATG	4 cut(s)	34, 302, 330, 503
NlaIV	GGNNCC	2 cut(s)	542, 627
PagI	TCATGA	1 cut(s)	30
PctI	GAATGC	1 cut(s)	44
PfeI	GAWTC	2 cut(s)	154, 449
PkrI	GCNGC	1 cut(s)	616
Psp6I	CCWGG	1 cut(s)	552
PspGI	CCWGG	1 cut(s)	552
PspN4I	GGNNCC	2 cut(s)	542, 627
RsaI	GTAC	5 cut(s)	134, 310, 459, 578, 627
RsaNI	GTAC	5 cut(s)	133, 309, 458, 577, 626
SaqAI	TTAA	2 cut(s)	351, 378
SatI	GCNGC	1 cut(s)	615
Sau3AI	GATC	1 cut(s)	442
ScrFI	CCNGG	1 cut(s)	554
SduI	GDGCHC	1 cut(s)	652
SetI	ASST	9 cut(s)	153, 262, 276, 507, 538, 558, 596, 643, 660
SfaNI	GCATC	1 cut(s)	712
SfcI	CTRYAG	2 cut(s)	177, 570
SmlI	CTYRAG	1 cut(s)	108
SmoI	CTYRAG	1 cut(s)	108
Sse9I	AATT	3 cut(s)	142, 352, 583
SsiI	CCGC	2 cut(s)	202, 561
SspMI	CTAG	1 cut(s)	494
StyD4I	CCNGG	1 cut(s)	552
StyI	CCWWGG	1 cut(s)	326
TaaI	ACNGT	2 cut(s)	523, 604
TaiI	ACGT	3 cut(s)	153, 262, 596
TasI	AATT	3 cut(s)	142, 352, 583
TatI	WGTACW	1 cut(s)	132
TfiI	GAWTC	2 cut(s)	154, 449
Tru1I	TTAA	2 cut(s)	351, 378
Tru9I	TTAA	2 cut(s)	351, 378
TscAI	CASTG	4 cut(s)	442, 486, 657, 670
TseI	GCWGC	1 cut(s)	614
TspDTI	ATGAA	3 cut(s)	27, 47, 287
TspGWI	ACGGA	3 cut(s)	442, 546, 594
TspRI	CASTG	4 cut(s)	442, 486, 657, 670
XapI	RAATTY	1 cut(s)	583
XcmI	CCANNNNNNNNNTGG	1 cut(s)	534
XspI	CTAG	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.