pycom10g02530

Ribosomal protein S1-like RNA-binding domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
N/A
Physical Location & Seq
Forward (+)
2904581 .. 2905036
456 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 456 bp
ATGAGTAATGGGTCTGCTTCAGAAGTGGATAAAGATTCCAAAAAACCGGATGAAGACTCCGAAAAGGTCGATAAAGACAAGGCATTGACGCCTTTCTTGAAGTTTTTCGCTCCGAGAGATAGTGGGGATGGAGATGGAGTGGAAGAGAAGGGAGGTGAGGCGGGAGTTTTTGAGGAAGAAAGTGAATTGGATGGTGAAAATGAGGGAGCTGAGAACGTTAATATGGAGTATTACGAACCGAAACCAGGTGATTTTGTGGCTGAAGATGTTGTTTCAGGTAATGAGAATAAACTCGACGTGAATGTGGGGGCAGACTTGTTGGGTACAATGCTAAGGACTAAGGAGGTGGTGCCTTGTATGACAAAGAGATGGATTACTTGTTATGTGATACGAATTATGACATCGAAGAGATTATGGTCAGAGGGAAGATGGGGATTGTGGCAACTGAAGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

152

Amino Acids

16.86

Weight (kDa)

4.48

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 349
AciI CCGC 1 cut(s) 161
AclI AACGTT 1 cut(s) 216
AcuI CTGAAG 1 cut(s) 282
AcyI GRCGYC 1 cut(s) 89
AfaI GTAC 1 cut(s) 325
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 1 cut(s) 100
AjiI CACGTC 1 cut(s) 298
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 2 cut(s) 209, 451
AluI AGCT 2 cut(s) 209, 451
Asp700I GAANNNNTTC 1 cut(s) 104
AsuHPI GGTGA 3 cut(s) 167, 206, 260
BanI GGYRCC 1 cut(s) 349
BbsI GAAGAC 1 cut(s) 60
BccI CCATC 5 cut(s) 122, 128, 185, 363, 423
BciT130I CCWGG 1 cut(s) 246
Bme1390I CCNGG 1 cut(s) 246
BmgBI CACGTC 1 cut(s) 298
BmiI GGNNCC 1 cut(s) 351
BmrFI CCNGG 1 cut(s) 246
BpiI GAAGAC 1 cut(s) 60
Bpu10I CCTNAGC 1 cut(s) 332
BsaHI GRCGYC 1 cut(s) 89
BsaWI WCCGGW 1 cut(s) 46
BsaXI ACNNNNNCTCC 2 cut(s) 123, 153
Bsc4I CCNNNNNNNGG 1 cut(s) 245
BseBI CCWGG 1 cut(s) 246
BseGI GGATG 3 cut(s) 55, 133, 196
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMII CTCAG 1 cut(s) 201
BshNI GGYRCC 1 cut(s) 349
BsiSI CCGG 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 245
BspACI CCGC 1 cut(s) 161
BspCNI CTCAG 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 351
BspT107I GGYRCC 1 cut(s) 349
BssNI GRCGYC 1 cut(s) 89
Bst2UI CCWGG 1 cut(s) 246
Bst6I CTCTTC 2 cut(s) 138, 401
BstACI GRCGYC 1 cut(s) 89
BstDEI CTNAG 3 cut(s) 210, 332, 339
BstF5I GGATG 3 cut(s) 55, 133, 196
BstMWI GCNNNNNNNGC 1 cut(s) 448
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 1 cut(s) 244
BstV2I GAAGAC 1 cut(s) 60
BtrI CACGTC 1 cut(s) 298
BtsCI GGATG 3 cut(s) 55, 133, 196
CseI GACGC 1 cut(s) 97
CsiI ACCWGGT 1 cut(s) 244
Csp6I GTAC 1 cut(s) 324
CviJI RGCY 3 cut(s) 209, 260, 451
CviKI_1 RGCY 3 cut(s) 209, 260, 451
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 3 cut(s) 210, 332, 339
Eam1104I CTCTTC 2 cut(s) 138, 401
EarI CTCTTC 2 cut(s) 138, 401
Eco57I CTGAAG 1 cut(s) 282
EcoRII CCWGG 1 cut(s) 244
FaiI YATR 5 cut(s) 224, 359, 384, 398, 415
FauI CCCGC 1 cut(s) 154
FokI GGATG 3 cut(s) 62, 140, 203
HapII CCGG 1 cut(s) 47
HgaI GACGC 1 cut(s) 97
Hin1I GRCGYC 1 cut(s) 89
HinfI GANTC 2 cut(s) 35, 56
HpaII CCGG 1 cut(s) 47
HphI GGTGA 3 cut(s) 167, 206, 260
Hpy188I TCNGA 4 cut(s) 22, 61, 114, 421
Hpy188III TCNNGA 1 cut(s) 97
Hpy99I CGWCG 1 cut(s) 299
HpyAV CCTTC 1 cut(s) 142
HpyCH4IV ACGT 2 cut(s) 216, 297
HpyF10VI GCNNNNNNNGC 1 cut(s) 448
HpyF3I CTNAG 3 cut(s) 210, 332, 339
HpySE526I ACGT 2 cut(s) 216, 297
Hsp92I GRCGYC 1 cut(s) 89
LmnI GCTCC 2 cut(s) 115, 206
LpnPI CCDG 4 cut(s) 60, 231, 258, 261
MabI ACCWGGT 1 cut(s) 244
MaeII ACGT 2 cut(s) 216, 297
MboII GAAGA 6 cut(s) 65, 155, 188, 275, 418, 438
MluCI AATT 2 cut(s) 185, 393
MlyI GAGTC 1 cut(s) 50
MnlI CCTC 6 cut(s) 146, 151, 166, 196, 337, 415
MroXI GAANNNNTTC 1 cut(s) 104
MseI TTAA 1 cut(s) 219
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 246
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 448
NlaIV GGNNCC 1 cut(s) 351
PdmI GAANNNNTTC 1 cut(s) 104
PfeI GAWTC 1 cut(s) 35
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
Psp1406I AACGTT 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 1 cut(s) 351
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
SaqAI TTAA 1 cut(s) 219
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 1 cut(s) 246
SetI ASST 9 cut(s) 69, 157, 211, 219, 250, 280, 300, 348, 453
SexAI ACCWGGT 1 cut(s) 244
Sse9I AATT 2 cut(s) 185, 393
SsiI CCGC 1 cut(s) 161
StyD4I CCNGG 1 cut(s) 244
TaiI ACGT 2 cut(s) 219, 300
TaqI TCGA 3 cut(s) 69, 294, 404
TasI AATT 2 cut(s) 185, 393
TfiI GAWTC 1 cut(s) 35
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TspDTI ATGAA 1 cut(s) 66
XmnI GAANNNNTTC 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.