pycom10g02730

Programmed cell death protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
N/A
Physical Location & Seq
Reverse (-)
3046864 .. 3047340
477 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 477 bp
ATGGCCAAGTCATTGCTAAAGGCTCGACTTTCTGGGGAGCGGATATTAAGGTGTTGGGGTGGTGGTGGCAGACCTGGATGGGCAGTTGAGGATGTGAAGGACAAGATTGGGAAGTTGCTGGAAGAGTTTGAGTCTGGAGGGGATGTAAAAGAGGCTTGCCGCTGCATGAAGGAGTTAGGCATGCCATTCTTCAACCATGAGGTTGTCAAAAAAGCTCTGGTGACGATTATGGAAAAGAAGAATGAGAGACTCTGGATTTTGCTGGAGGAAAGTTTTGCCTCTGGACTCATCACAATGAACCAAATGGCAAAAGGGTTTGGTAGAGTTGCAGAGTCTCTAGATGATTTGGCTTTGGATGTTCCTGATGCCCAGAAACAATTTACACATTACGTTGAACGAGCAAAGAATGCAGGGTGGTTGGATTCCTCATTTTGTTTCAGCAAATCAGGACACAGAACAGAGAATGGCACTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

159

Amino Acids

17.61

Weight (kDa)

7.66

Isoelectric Point (pI)

41.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MA3 PF02847 32 - 141 7.9e-31 MA3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 40
AciI CCGC 2 cut(s) 40, 160
AcoI YGGCCR 1 cut(s) 3
AgsI TTSAA 2 cut(s) 193, 395
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 1 cut(s) 215
AluI AGCT 1 cut(s) 215
Alw26I GTCTC 2 cut(s) 241, 339
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 162
AsuHPI GGTGA 1 cut(s) 232
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 149
BccI CCATC 1 cut(s) 72
BciT130I CCWGG 1 cut(s) 75
BcoDI GTCTC 2 cut(s) 241, 339
BfaI CTAG 1 cut(s) 338
BisI GCNGC 2 cut(s) 160, 163
BlsI GCNGC 2 cut(s) 161, 164
Bme1390I CCNGG 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 75
BmsI GCATC 1 cut(s) 355
BpmI CTGGAG 2 cut(s) 156, 284
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
Bse1I ACTGG 1 cut(s) 475
Bse3DI GCAATG 1 cut(s) 11
BseBI CCWGG 1 cut(s) 75
BseGI GGATG 4 cut(s) 83, 97, 148, 361
BseMI GCAATG 1 cut(s) 11
BseNI ACTGG 1 cut(s) 475
BseXI GCAGC 1 cut(s) 149
BshFI GGCC 1 cut(s) 5
BsmAI GTCTC 2 cut(s) 241, 339
BsmI GAATGC 1 cut(s) 412
BsnI GGCC 1 cut(s) 5
BspACI CCGC 2 cut(s) 40, 160
BspANI GGCC 1 cut(s) 5
BsrBI CCGCTC 1 cut(s) 40
BsrDI GCAATG 1 cut(s) 11
BsrI ACTGG 1 cut(s) 475
Bst2UI CCWGG 1 cut(s) 75
Bst6I CTCTTC 1 cut(s) 117
BstAPI GCANNNNNTGC 1 cut(s) 407
BstC8I GCNNGC 2 cut(s) 157, 182
BstF5I GGATG 4 cut(s) 83, 97, 148, 361
BstMAI GTCTC 2 cut(s) 241, 339
BstMWI GCNNNNNNNGC 1 cut(s) 407
BstNI CCWGG 1 cut(s) 75
BstNSI RCATGY 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 73
BstV1I GCAGC 1 cut(s) 149
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 4 cut(s) 83, 97, 148, 361
BtsIMutI CAGTG 1 cut(s) 468
Cac8I GCNNGC 2 cut(s) 157, 182
CviAII CATG 3 cut(s) 166, 181, 197
CviJI RGCY 6 cut(s) 5, 23, 155, 215, 350, 474
CviKI_1 RGCY 6 cut(s) 5, 23, 155, 215, 350, 474
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 73
FaeI CATG 3 cut(s) 169, 184, 200
FaiI YATR 4 cut(s) 167, 182, 198, 230
FatI CATG 3 cut(s) 165, 180, 196
Fnu4HI GCNGC 2 cut(s) 160, 163
FokI GGATG 4 cut(s) 90, 104, 155, 368
Fsp4HI GCNGC 2 cut(s) 160, 163
FspBI CTAG 1 cut(s) 338
GluI GCNGC 2 cut(s) 160, 163
GsuI CTGGAG 2 cut(s) 156, 284
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 3 cut(s) 169, 184, 200
HinfI GANTC 5 cut(s) 131, 249, 285, 332, 422
HphI GGTGA 1 cut(s) 232
Hpy188III TCNNGA 6 cut(s) 135, 253, 282, 338, 362, 447
HpyAV CCTTC 2 cut(s) 91, 163
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 3 cut(s) 165, 329, 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 407
HpySE526I ACGT 1 cut(s) 390
Hsp92II CATG 3 cut(s) 169, 184, 200
LmnI GCTCC 1 cut(s) 37
Lsp1109I GCAGC 1 cut(s) 149
LweI GCATC 1 cut(s) 355
MaeI CTAG 1 cut(s) 338
MaeII ACGT 1 cut(s) 390
MaeIII GTNAC 1 cut(s) 220
MbiI CCGCTC 1 cut(s) 40
MboII GAAGA 3 cut(s) 134, 181, 250
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 377
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 4 cut(s) 140, 243, 279, 341
MmeI TCCRAC 1 cut(s) 399
MnlI CCTC 7 cut(s) 82, 131, 145, 193, 259, 289, 436
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 47
MslI CAYNNNNRTG 1 cut(s) 293
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 162
MspR9I CCNGG 1 cut(s) 75
Mva1269I GAATGC 1 cut(s) 412
MvaI CCWGG 1 cut(s) 75
MwoI GCNNNNNNNGC 1 cut(s) 407
NlaIII CATG 3 cut(s) 169, 184, 200
NmuCI GTSAC 1 cut(s) 220
NspI RCATGY 1 cut(s) 184
PaeI GCATGC 1 cut(s) 184
PctI GAATGC 1 cut(s) 412
PfeI GAWTC 1 cut(s) 422
PkrI GCNGC 2 cut(s) 161, 164
PleI GAGTC 4 cut(s) 139, 243, 279, 340
PpsI GAGTC 4 cut(s) 139, 243, 279, 340
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
RseI CAYNNNNRTG 1 cut(s) 293
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 2 cut(s) 160, 163
SchI GAGTC 4 cut(s) 140, 243, 279, 341
ScrFI CCNGG 1 cut(s) 75
SetI ASST 5 cut(s) 53, 76, 204, 217, 393
SfaNI GCATC 1 cut(s) 355
SmiMI CAYNNNNRTG 1 cut(s) 293
SphI GCATGC 1 cut(s) 184
Sse9I AATT 1 cut(s) 377
SsiI CCGC 2 cut(s) 40, 160
SspMI CTAG 1 cut(s) 338
StyD4I CCNGG 1 cut(s) 73
TaiI ACGT 1 cut(s) 393
TaqI TCGA 1 cut(s) 25
TasI AATT 1 cut(s) 377
TauI GCSGC 1 cut(s) 162
TfiI GAWTC 1 cut(s) 422
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TscAI CASTG 1 cut(s) 475
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 1 cut(s) 162
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 2 cut(s) 182, 311
TspRI CASTG 1 cut(s) 475
XbaI TCTAGA 1 cut(s) 337
XceI RCATGY 1 cut(s) 184
XspI CTAG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.