pycom10g03200

Domain of unknown function (DUF3475)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
N/A
Physical Location & Seq
Forward (+)
3551265 .. 3553272
2008 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 258 bp
ATGGGCGGGATTGTGAACATGGTGAAGAAGTCGCCCAAAGTACAACAAGTGGATATAGTTTTAGGCAATAACCATCCCGAATATGGTGGCAATGGGTCTGACGTAGGAGTCAATGATGAGTTTCCTTGCTTTCCTAAGCGGACTGCTGCTCCAAAGCGTAGTTTGCTAGTAATTTACTGCAGTTATTTAATTATATATTGTTTCAGAAGTAAGTTCACTTTTGGGCAGGGGTATCAAAATTCTAGACAAGCTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

86

Amino Acids

9.54

Weight (kDa)

9.33

Isoelectric Point (pI)

38.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 107
AciI CCGC 2 cut(s) 6, 139
AcsI RAATTY 1 cut(s) 238
AfaI GTAC 1 cut(s) 42
AfiI CCNNNNNNNGG 1 cut(s) 83
AluBI AGCT 1 cut(s) 251
AluI AGCT 1 cut(s) 251
ApeKI GCWGC 1 cut(s) 146
ApoI RAATTY 1 cut(s) 238
AsuHPI GGTGA 1 cut(s) 34
BbvI GCAGC 1 cut(s) 133
BccI CCATC 1 cut(s) 81
BfaI CTAG 2 cut(s) 167, 243
BfmI CTRYAG 1 cut(s) 178
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
Bpu10I CCTNAGC 1 cut(s) 135
BsaXI ACNNNNNCTCC 2 cut(s) 133, 163
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse3DI GCAATG 1 cut(s) 97
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMI GCAATG 1 cut(s) 97
BseXI GCAGC 1 cut(s) 133
BslI CCNNNNNNNGG 1 cut(s) 83
BspACI CCGC 2 cut(s) 6, 139
BspMAI CTGCAG 1 cut(s) 182
BsrDI GCAATG 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 135
BstF5I GGATG 1 cut(s) 73
BstMWI GCNNNNNNNGC 1 cut(s) 163
BstSFI CTRYAG 1 cut(s) 178
BstV1I GCAGC 1 cut(s) 133
BtsCI GGATG 1 cut(s) 73
Csp6I GTAC 1 cut(s) 41
CviAII CATG 1 cut(s) 19
CviJI RGCY 1 cut(s) 251
CviKI_1 RGCY 1 cut(s) 251
CviQI GTAC 1 cut(s) 41
DdeI CTNAG 1 cut(s) 135
DrdI GACNNNNNNGTC 1 cut(s) 107
DseDI GACNNNNNNGTC 1 cut(s) 107
FaeI CATG 1 cut(s) 22
FaiI YATR 5 cut(s) 20, 56, 84, 194, 196
FatI CATG 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 147
FokI GGATG 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 147
FspBI CTAG 2 cut(s) 167, 243
GluI GCNGC 1 cut(s) 147
Hin1II CATG 1 cut(s) 22
HindIII AAGCTT 1 cut(s) 249
HinfI GANTC 1 cut(s) 108
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 2 cut(s) 16, 216
Hpy188I TCNGA 2 cut(s) 100, 206
Hpy188III TCNNGA 2 cut(s) 77, 243
Hpy8I GTNNAC 2 cut(s) 16, 216
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 1 cut(s) 180
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
HpyF3I CTNAG 1 cut(s) 135
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 1 cut(s) 22
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 1 cut(s) 212
Lsp1109I GCAGC 1 cut(s) 133
MaeI CTAG 2 cut(s) 167, 243
MaeII ACGT 1 cut(s) 102
MboII GAAGA 1 cut(s) 37
MluCI AATT 3 cut(s) 171, 189, 238
MlyI GAGTC 1 cut(s) 117
MseI TTAA 1 cut(s) 188
MwoI GCNNNNNNNGC 1 cut(s) 163
NlaIII CATG 1 cut(s) 22
PkrI GCNGC 1 cut(s) 148
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PstI CTGCAG 1 cut(s) 182
RsaI GTAC 1 cut(s) 42
RsaNI GTAC 1 cut(s) 41
SaqAI TTAA 1 cut(s) 188
SatI GCNGC 1 cut(s) 147
SchI GAGTC 1 cut(s) 117
SetI ASST 2 cut(s) 105, 253
SfcI CTRYAG 1 cut(s) 178
SgeI CNNG 7 cut(s) 19, 31, 59, 89, 138, 179, 239
Sse9I AATT 3 cut(s) 171, 189, 238
SsiI CCGC 2 cut(s) 6, 139
SspMI CTAG 2 cut(s) 167, 243
TaiI ACGT 1 cut(s) 105
TasI AATT 3 cut(s) 171, 189, 238
TatI WGTACW 1 cut(s) 40
Tru1I TTAA 1 cut(s) 188
Tru9I TTAA 1 cut(s) 188
TseI GCWGC 1 cut(s) 146
XapI RAATTY 1 cut(s) 238
XbaI TCTAGA 1 cut(s) 242
XcmI CCANNNNNNNNNTGG 1 cut(s) 80
XspI CTAG 2 cut(s) 167, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.