Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

3638217 .. 3638600

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGTGTAAGAATAACTACAAGAGAACCCACTGTGTCAAAAGTTACACTTGCAGCAGATGCAACAGCAAGAAGTTCTCCGTTATTGCAGATCTGAAAACTCATGAGAAGCATTGTGGTAAGGACAAGTGGCTTTGTTCTTGTGGCACTACCTTCTCAAGGAAAGACAAGCTTTTTGGCCATATTGCCCTTTTCCAAGGTCACACTCCTGCCATACCCCCCGATGAACCAAAAGGAACCCTAGGGCCAACAGACCACGGGGAAGGCAGTGAAGTGTCAAACAGAGTTGGAAGCATTAACTTCAGTTTTGGCTCCACTGCTCCTGGCGGAGGTGGTGGATCTCAAAATCTCATGGATGTGAAAGAAAGTATTGATCGATCCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009268 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010447 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043620 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

128

Amino Acids

13.82

Weight (kDa)

9.01

Isoelectric Point (pI)

28.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_C	PF23118	42 - 71	1.3e-23	STOP2-like, C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	324
AclWI	GGATC	2 cut(s)	343, 369
AcoI	YGGCCR	1 cut(s)	175
AcuI	CTGAAG	1 cut(s)	283
AfiI	CCNNNNNNNGG	2 cut(s)	156, 326
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
AlwI	GGATC	2 cut(s)	343, 369
AoxI	GGCC	2 cut(s)	175, 242
ApeKI	GCWGC	1 cut(s)	51
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
AspA2I	CCTAGG	1 cut(s)	238
AspS9I	GGNCC	1 cut(s)	242
AvrII	CCTAGG	1 cut(s)	238
BalI	TGGCCA	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	63
BciT130I	CCWGG	1 cut(s)	321
BfaI	CTAG	2 cut(s)	239, 382
BglII	AGATCT	1 cut(s)	88
BisI	GCNGC	1 cut(s)	52
BlnI	CCTAGG	1 cut(s)	238
BlsI	GCNGC	1 cut(s)	53
Bme1390I	CCNGG	1 cut(s)	321
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	2 cut(s)	235, 310
BmrFI	CCNGG	1 cut(s)	321
BmsI	GCATC	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	139
Bsa29I	ATCGAT	1 cut(s)	373
BsaJI	CCNNGG	3 cut(s)	193, 238, 253
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 326
BseBI	CCWGG	1 cut(s)	321
BseCI	ATCGAT	1 cut(s)	373
BseDI	CCNNGG	3 cut(s)	193, 238, 253
BseGI	GGATG	1 cut(s)	358
BseLI	CCNNNNNNNGG	2 cut(s)	156, 326
BseXI	GCAGC	1 cut(s)	63
BshFI	GGCC	2 cut(s)	177, 244
BshVI	ATCGAT	1 cut(s)	373
BslI	CCNNNNNNNGG	2 cut(s)	156, 326
BsnI	GGCC	2 cut(s)	177, 244
Bsp143I	GATC	4 cut(s)	88, 335, 370, 374
BspACI	CCGC	1 cut(s)	324
BspANI	GGCC	2 cut(s)	177, 244
BspDI	ATCGAT	1 cut(s)	373
BspHI	TCATGA	1 cut(s)	100
BspLI	GGNNCC	2 cut(s)	235, 310
BspPI	GGATC	2 cut(s)	343, 369
BssECI	CCNNGG	3 cut(s)	193, 238, 253
BssMI	GATC	4 cut(s)	88, 335, 370, 374
BssT1I	CCWWGG	2 cut(s)	193, 238
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	1 cut(s)	32
BstAPI	GCANNNNNTGC	1 cut(s)	57
BstDSI	CCRYGG	1 cut(s)	253
BstENI	CCTNNNNNAGG	2 cut(s)	154, 324
BstF5I	GGATG	1 cut(s)	358
BstKTI	GATC	4 cut(s)	91, 338, 373, 377
BstMBI	GATC	4 cut(s)	88, 335, 370, 374
BstMWI	GCNNNNNNNGC	1 cut(s)	57
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	319
BstV1I	GCAGC	1 cut(s)	63
BstX2I	RGATCY	2 cut(s)	88, 335
BstYI	RGATCY	2 cut(s)	88, 335
Bsu15I	ATCGAT	1 cut(s)	373
BsuRI	GGCC	2 cut(s)	177, 244
BsuTUI	ATCGAT	1 cut(s)	373
BtgI	CCRYGG	1 cut(s)	253
BtsCI	GGATG	1 cut(s)	358
BtsI	GCAGTG	2 cut(s)	271, 312
BtsIMutI	CAGTG	3 cut(s)	28, 271, 312
CciI	TCATGA	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	242
ClaI	ATCGAT	1 cut(s)	373
CviAII	CATG	2 cut(s)	101, 349
CviJI	RGCY	5 cut(s)	130, 169, 177, 244, 309
CviKI_1	RGCY	5 cut(s)	130, 169, 177, 244, 309
DpnI	GATC	4 cut(s)	90, 337, 372, 376
DpnII	GATC	4 cut(s)	88, 335, 370, 374
EaeI	YGGCCR	1 cut(s)	175
EciI	GGCGGA	1 cut(s)	339
Eco130I	CCWWGG	2 cut(s)	193, 238
Eco57I	CTGAAG	1 cut(s)	283
EcoNI	CCTNNNNNAGG	2 cut(s)	154, 324
EcoRII	CCWGG	1 cut(s)	319
EcoT14I	CCWWGG	2 cut(s)	193, 238
ErhI	CCWWGG	2 cut(s)	193, 238
FaeI	CATG	2 cut(s)	104, 352
FaiI	YATR	4 cut(s)	102, 180, 212, 350
FalI	AAGNNNNNCTT	4 cut(s)	31, 63, 153, 185
FatI	CATG	2 cut(s)	100, 348
Fnu4HI	GCNGC	1 cut(s)	52
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	1 cut(s)	52
FspBI	CTAG	2 cut(s)	239, 382
GluI	GCNGC	1 cut(s)	52
HaeIII	GGCC	2 cut(s)	177, 244
Hin1II	CATG	2 cut(s)	104, 352
HindIII	AAGCTT	1 cut(s)	167
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	1 cut(s)	101
HpyAV	CCTTC	2 cut(s)	160, 254
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4V	TGCA	3 cut(s)	51, 60, 86
HpyF10VI	GCNNNNNNNGC	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	104, 352
Kzo9I	GATC	4 cut(s)	88, 335, 370, 374
LmnI	GCTCC	2 cut(s)	314, 322
LpnPI	CCDG	3 cut(s)	219, 306, 333
Lsp1109I	GCAGC	1 cut(s)	63
LweI	GCATC	1 cut(s)	47
MaeI	CTAG	2 cut(s)	239, 382
MaeIII	GTNAC	2 cut(s)	41, 197
MalI	GATC	4 cut(s)	90, 337, 372, 376
MboI	GATC	4 cut(s)	88, 335, 370, 374
MflI	RGATCY	2 cut(s)	88, 335
MlsI	TGGCCA	1 cut(s)	177
MluNI	TGGCCA	1 cut(s)	177
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	1 cut(s)	320
Mox20I	TGGCCA	1 cut(s)	177
MscI	TGGCCA	1 cut(s)	177
MseI	TTAA	1 cut(s)	294
MslI	CAYNNNNRTG	1 cut(s)	353
Msp20I	TGGCCA	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	57
NdeII	GATC	4 cut(s)	88, 335, 370, 374
NlaIII	CATG	2 cut(s)	104, 352
NlaIV	GGNNCC	2 cut(s)	235, 310
NmuCI	GTSAC	1 cut(s)	197
PagI	TCATGA	1 cut(s)	100
PkrI	GCNGC	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	2 cut(s)	235, 310
PspPI	GGNCC	1 cut(s)	242
PsuI	RGATCY	2 cut(s)	88, 335
RseI	CAYNNNNRTG	1 cut(s)	353
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	1 cut(s)	52
Sau3AI	GATC	4 cut(s)	88, 335, 370, 374
Sau96I	GGNCC	1 cut(s)	242
ScrFI	CCNGG	1 cut(s)	321
SetI	ASST	4 cut(s)	152, 171, 199, 331
SfaNI	GCATC	1 cut(s)	47
SmiMI	CAYNNNNRTG	1 cut(s)	353
SmlI	CTYRAG	1 cut(s)	154
SmoI	CTYRAG	1 cut(s)	154
SsiI	CCGC	1 cut(s)	324
SspMI	CTAG	2 cut(s)	239, 382
StyD4I	CCNGG	1 cut(s)	319
StyI	CCWWGG	2 cut(s)	193, 238
TaaI	ACNGT	1 cut(s)	32
TaqI	TCGA	1 cut(s)	373
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	3 cut(s)	35, 271, 319
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	1 cut(s)	51
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	1 cut(s)	237
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	3 cut(s)	35, 271, 319
XagI	CCTNNNNNAGG	2 cut(s)	154, 324
XmaJI	CCTAGG	1 cut(s)	238
XspI	CTAG	2 cut(s)	239, 382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.