pycom10g03840

Ribosomal Proteins L2, C-terminal domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
N/A
Physical Location & Seq
Forward (+)
4174115 .. 4176185
2071 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1245 bp
ATGATGTGCCACCTTCAATGGCTTACGTCGTGTGTTATGTGTTGTATGTTCATCTTCAATGAAAACTTTCTCTTCATTCAGTTGATATGTTTGTTTGTTATAAATGATATTTGTAGAATCCCTTTTAAAAGGAAATCAATTAAAATAATTTTTTCAAGATTTATCATTGGTATGTCAAACTTGACGACAAAAGACTCATATGTCAATTCACTTAGAATTGACATATCGGTTGAAATCTTTAGAGATGGTCTTATCCCATGTCCAATGCATTCCTACATTTCTCTAATTTTATCATCAACTATACATACATATTTCATTAGTTTAGCTACAATATATATATATTTACTTAGTATATCAACTATCTGCCAATCATATATGATACTATATATTCACTTATTATATTCAACATCTAACAGTTCGATAAATACTATATCTTTTTATCCCCTGTCAAATTTTGGTTTTCCTACATCCTATGCATCTAAATTATCTTTAAAATATAATTACCAGATATTTAAATCATATTTTATAAACCACATAATGTTGTTGATGATATTTTATTATTTAAGTATGGTTTACAAATGTGATCTAAATAAATGTCTCCCTAACATTTTCCTTTTTAGACCACAACTAGACAATCTCTCGAATAGATATAGGGTCTTCAACACAATATGTCTCATCTTTGATGTAACGTCCGATGACTACGATTACACGTCAACTTATTTTTATTTTCATACCAAAGGCACCCCTAAGCTTATAAAATGTAGTAAATTTGTAAATTATACTTTATTTCCATGTATCACATCTTTAATTGTTTATACCAATATATATCTCTTACATTTTTTTATCTGTTTTTTTTTTCTTTTTCAATGCAAAGCAAAGAAACGTGCAATTGATTTTTTTTTTTTTTTTTCATCCCAAAAACCCCTTGCAAAACAGGGGAAATCGGCCGCGGCAAAATTACCTTCTGGAGAGTTCCGTTTGATATCTAAAAACTCCTCAGCAACAGTTAGACAAATTGGGAATGTTGGGGTGAACTATCATATCACATTTTTAATTGTTTATCTAATTTTGTTGACCACATCTTTTTTTATGAGACATATACATATATATATATATTTTGTATACTTTACTTTTATTGGAAAGGGTGATGCAGGGAGACTGCATTTTGTAGATCGAGTAATTCTAGGAATACCATTTTTTTTATTACTCCAGTGCTTAATTAACGAGTTTATTTTTTATTGGTAG

Protein Analysis

415

Amino Acids

48.79

Weight (kDa)

9.25

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 101, 527, 755
AasI GACNNNNNNGTC 1 cut(s) 200
AccB1I GGYRCC 1 cut(s) 740
AccI GTMKAC 1 cut(s) 1122
AccII CGCG 1 cut(s) 950
AciI CCGC 2 cut(s) 948, 950
AcoI YGGCCR 1 cut(s) 945
AcsI RAATTY 2 cut(s) 451, 767
AflIII ACRYGT 1 cut(s) 708
AgsI TTSAA 7 cut(s) 17, 58, 156, 233, 405, 661, 866
AjiI CACGTC 1 cut(s) 711
AluBI AGCT 2 cut(s) 326, 751
AluI AGCT 2 cut(s) 326, 751
Alw26I GTCTC 4 cut(s) 602, 677, 1087, 1150
AoxI GGCC 1 cut(s) 945
ApoI RAATTY 2 cut(s) 451, 767
Asp700I GAANNNNTTC 1 cut(s) 66
AsuHPI GGTGA 2 cut(s) 1042, 1157
BanI GGYRCC 1 cut(s) 740
BbsI GAAGAC 1 cut(s) 649
BbvCI CCTCAGC 1 cut(s) 997
BccI CCATC 1 cut(s) 239
BcoDI GTCTC 4 cut(s) 602, 677, 1087, 1150
BfaI CTAG 2 cut(s) 629, 1184
BisI GCNGC 2 cut(s) 948, 951
BlsI GCNGC 2 cut(s) 949, 952
BmgBI CACGTC 1 cut(s) 711
BmiI GGNNCC 1 cut(s) 742
BmsI GCATC 2 cut(s) 485, 1138
BpiI GAAGAC 1 cut(s) 649
BpmI CTGGAG 2 cut(s) 987, 1193
Bpu10I CCTNAGC 2 cut(s) 747, 997
BsaJI CCNNGG 1 cut(s) 948
Bse1I ACTGG 1 cut(s) 1210
BseDI CCNNGG 1 cut(s) 948
BseGI GGATG 2 cut(s) 467, 911
BseMII CTCAG 1 cut(s) 1011
BseNI ACTGG 1 cut(s) 1210
BseRI GAGGAG 1 cut(s) 985
BseX3I CGGCCG 1 cut(s) 945
Bsh1236I CGCG 1 cut(s) 950
Bsh1285I CGRYCG 1 cut(s) 948
BshFI GGCC 1 cut(s) 947
BshNI GGYRCC 1 cut(s) 740
BsiEI CGRYCG 1 cut(s) 948
BsmAI GTCTC 4 cut(s) 602, 677, 1087, 1150
BsmI GAATGC 1 cut(s) 268
BsnI GGCC 1 cut(s) 947
Bsp143I GATC 2 cut(s) 583, 1171
BspACI CCGC 2 cut(s) 948, 950
BspANI GGCC 1 cut(s) 947
BspCNI CTCAG 1 cut(s) 1010
BspFNI CGCG 1 cut(s) 950
BspLI GGNNCC 1 cut(s) 742
BspT107I GGYRCC 1 cut(s) 740
BsrI ACTGG 1 cut(s) 1210
BssECI CCNNGG 1 cut(s) 948
BssMI GATC 2 cut(s) 583, 1171
BssNAI GTATAC 1 cut(s) 1123
Bst1107I GTATAC 1 cut(s) 1123
Bst4CI ACNGT 2 cut(s) 416, 1006
Bst6I CTCTTC 1 cut(s) 77
BstDEI CTNAG 4 cut(s) 212, 347, 747, 997
BstDSI CCRYGG 1 cut(s) 948
BstF5I GGATG 2 cut(s) 467, 911
BstFNI CGCG 1 cut(s) 950
BstKTI GATC 2 cut(s) 586, 1174
BstMAI GTCTC 4 cut(s) 602, 677, 1087, 1150
BstMBI GATC 2 cut(s) 583, 1171
BstMCI CGRYCG 1 cut(s) 948
BstUI CGCG 1 cut(s) 950
BstV2I GAAGAC 1 cut(s) 649
BstZ17I GTATAC 1 cut(s) 1123
BstZI CGGCCG 1 cut(s) 945
BsuRI GGCC 1 cut(s) 947
BtgI CCRYGG 1 cut(s) 948
BtrI CACGTC 1 cut(s) 711
BtsCI GGATG 2 cut(s) 467, 911
BtsIMutI CAGTG 1 cut(s) 1217
Cfr42I CCGCGG 1 cut(s) 951
CviAII CATG 2 cut(s) 258, 792
CviJI RGCY 4 cut(s) 22, 326, 751, 947
CviKI_1 RGCY 4 cut(s) 22, 326, 751, 947
DdeI CTNAG 4 cut(s) 212, 347, 747, 997
DpnI GATC 2 cut(s) 585, 1173
DpnII GATC 2 cut(s) 583, 1171
DraI TTTAAA 3 cut(s) 127, 492, 514
DrdI GACNNNNNNGTC 1 cut(s) 200
DseDI GACNNNNNNGTC 1 cut(s) 200
EaeI YGGCCR 1 cut(s) 945
EagI CGGCCG 1 cut(s) 945
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
EclXI CGGCCG 1 cut(s) 945
Eco32I GATATC 1 cut(s) 984
Eco52I CGGCCG 1 cut(s) 945
EcoRV GATATC 1 cut(s) 984
EcoT22I ATGCAT 2 cut(s) 270, 478
FaeI CATG 2 cut(s) 261, 795
FatI CATG 2 cut(s) 257, 791
FauNDI CATATG 1 cut(s) 199
FblI GTMKAC 1 cut(s) 1122
Fnu4HI GCNGC 2 cut(s) 948, 951
FokI GGATG 2 cut(s) 454, 898
Fsp4HI GCNGC 2 cut(s) 948, 951
FspBI CTAG 2 cut(s) 629, 1184
GluI GCNGC 2 cut(s) 948, 951
GsuI CTGGAG 2 cut(s) 987, 1193
HaeIII GGCC 1 cut(s) 947
Hin1II CATG 2 cut(s) 261, 795
HincII GTYRAC 2 cut(s) 714, 1074
HindII GTYRAC 2 cut(s) 714, 1074
HindIII AAGCTT 1 cut(s) 749
HinfI GANTC 2 cut(s) 117, 194
HphI GGTGA 2 cut(s) 1042, 1157
Hpy166II GTNNAC 5 cut(s) 574, 714, 1033, 1074, 1123
Hpy188I TCNGA 1 cut(s) 694
Hpy188III TCNNGA 3 cut(s) 156, 640, 966
Hpy8I GTNNAC 5 cut(s) 574, 714, 1033, 1074, 1123
Hpy99I CGWCG 1 cut(s) 31
HpyAV CCTTC 2 cut(s) 23, 972
HpyCH4III ACNGT 2 cut(s) 416, 1006
HpyCH4IV ACGT 4 cut(s) 26, 689, 710, 883
HpyCH4V TGCA 7 cut(s) 268, 476, 870, 887, 929, 1151, 1162
HpyF3I CTNAG 4 cut(s) 212, 347, 747, 997
HpySE526I ACGT 4 cut(s) 26, 689, 710, 883
Hsp92II CATG 2 cut(s) 261, 795
KspI CCGCGG 1 cut(s) 951
Kzo9I GATC 2 cut(s) 583, 1171
LpnPI CCDG 6 cut(s) 458, 518, 920, 951, 1137, 1223
LweI GCATC 2 cut(s) 485, 1138
MaeI CTAG 2 cut(s) 629, 1184
MaeII ACGT 4 cut(s) 26, 689, 710, 883
MaeIII GTNAC 1 cut(s) 685
MalI GATC 2 cut(s) 585, 1173
MboI GATC 2 cut(s) 583, 1171
MboII GAAGA 3 cut(s) 46, 64, 649
MfeI CAATTG 1 cut(s) 888
MlyI GAGTC 1 cut(s) 188
MnlI CCTC 1 cut(s) 1006
Mph1103I ATGCAT 2 cut(s) 270, 478
MroXI GAANNNNTTC 1 cut(s) 66
MseI TTAA 9 cut(s) 126, 141, 491, 513, 563, 806, 1052, 1217, 1221
MslI CAYNNNNRTG 1 cut(s) 170
MspA1I CMGCKG 1 cut(s) 950
MunI CAATTG 1 cut(s) 888
Mva1269I GAATGC 1 cut(s) 268
MvnI CGCG 1 cut(s) 950
NdeI CATATG 1 cut(s) 199
NdeII GATC 2 cut(s) 583, 1171
NlaIII CATG 2 cut(s) 261, 795
NlaIV GGNNCC 1 cut(s) 742
NsiI ATGCAT 2 cut(s) 270, 478
PacI TTAATTAA 1 cut(s) 1221
PctI GAATGC 1 cut(s) 268
PdmI GAANNNNTTC 1 cut(s) 66
PfeI GAWTC 1 cut(s) 117
PkrI GCNGC 2 cut(s) 949, 952
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
PsiI TTATAA 3 cut(s) 101, 527, 755
PspN4I GGNNCC 1 cut(s) 742
RseI CAYNNNNRTG 1 cut(s) 170
SacII CCGCGG 1 cut(s) 951
SaqAI TTAA 9 cut(s) 126, 141, 491, 513, 563, 806, 1052, 1217, 1221
SatI GCNGC 2 cut(s) 948, 951
Sau3AI GATC 2 cut(s) 583, 1171
SchI GAGTC 1 cut(s) 188
SetI ASST 8 cut(s) 15, 29, 328, 692, 713, 753, 886, 964
SfaNI GCATC 2 cut(s) 485, 1138
Sfr303I CCGCGG 1 cut(s) 951
SgrBI CCGCGG 1 cut(s) 951
SmiI ATTTAAAT 1 cut(s) 514
SmiMI CAYNNNNRTG 1 cut(s) 170
SsiI CCGC 2 cut(s) 948, 950
SspMI CTAG 2 cut(s) 629, 1184
SwaI ATTTAAAT 1 cut(s) 514
TaaI ACNGT 2 cut(s) 416, 1006
TaiI ACGT 4 cut(s) 29, 692, 713, 886
TaqI TCGA 3 cut(s) 419, 641, 1174
TauI GCSGC 2 cut(s) 950, 953
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 9 cut(s) 126, 141, 491, 513, 563, 806, 1052, 1217, 1221
Tru9I TTAA 9 cut(s) 126, 141, 491, 513, 563, 806, 1052, 1217, 1221
TscAI CASTG 1 cut(s) 1217
TspDTI ATGAA 6 cut(s) 40, 64, 75, 304, 719, 900
TspGWI ACGGA 1 cut(s) 965
TspRI CASTG 1 cut(s) 1217
XapI RAATTY 2 cut(s) 451, 767
XmiI GTMKAC 1 cut(s) 1122
XmnI GAANNNNTTC 1 cut(s) 66
XspI CTAG 2 cut(s) 629, 1184
Zsp2I ATGCAT 2 cut(s) 270, 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.