pycom10g03970

E3 ubiquitin-protein ligase BRE1-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
N/A
Physical Location & Seq
Forward (+)
4220577 .. 4220798
222 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 222 bp
ATGATAAGAAAAAAAAAAAAAAAGGGGGAAAAAAAAAAAAAAAAAAAAAACGCGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCGAAACTGGAGAGTCTGCAATACAGAAACTCCAAACACAAATTAAATTCTGCAAGAATATTTTGCAGCGCAGTGTTTGTACAGATAGGTCAAAGGAGTTAAGGAAGATAATTGCCGCGTCTAAGCAGTTTTGA

Protein Analysis

74

Amino Acids

8.61

Weight (kDa)

10.63

Isoelectric Point (pI)

50.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 53, 206
AciI CCGC 1 cut(s) 204
AcsI RAATTY 1 cut(s) 134
AfaI GTAC 1 cut(s) 169
AflIII ACRYGT 1 cut(s) 51
ApeKI GCWGC 1 cut(s) 154
ApoI RAATTY 1 cut(s) 134
AspLEI GCGC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 166
BisI GCNGC 2 cut(s) 155, 204
BlsI GCNGC 2 cut(s) 156, 205
BpmI CTGGAG 1 cut(s) 117
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bse1I ACTGG 1 cut(s) 100
BseNI ACTGG 1 cut(s) 100
BseXI GCAGC 1 cut(s) 166
Bsh1236I CGCG 2 cut(s) 53, 206
Bsp1407I TGTACA 1 cut(s) 167
BspACI CCGC 1 cut(s) 204
BspFNI CGCG 2 cut(s) 53, 206
BsrGI TGTACA 1 cut(s) 167
BsrI ACTGG 1 cut(s) 100
BstAUI TGTACA 1 cut(s) 167
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 1 cut(s) 210
BstFNI CGCG 2 cut(s) 53, 206
BstHHI GCGC 1 cut(s) 159
BstUI CGCG 2 cut(s) 53, 206
BstV1I GCAGC 1 cut(s) 166
BtsI GCAGTG 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 166
Cac8I GCNNGC 1 cut(s) 55
CfoI GCGC 1 cut(s) 159
CseI GACGC 1 cut(s) 195
Csp6I GTAC 1 cut(s) 168
CviQI GTAC 1 cut(s) 168
DdeI CTNAG 1 cut(s) 210
Fnu4HI GCNGC 2 cut(s) 155, 204
Fsp4HI GCNGC 2 cut(s) 155, 204
GlaI GCGC 1 cut(s) 158
GluI GCNGC 2 cut(s) 155, 204
GsuI CTGGAG 1 cut(s) 117
HgaI GACGC 1 cut(s) 195
HhaI GCGC 1 cut(s) 159
Hin6I GCGC 1 cut(s) 157
HinP1I GCGC 1 cut(s) 157
HinfI GANTC 1 cut(s) 101
HpyCH4V TGCA 4 cut(s) 57, 107, 141, 154
HpyF3I CTNAG 1 cut(s) 210
HspAI GCGC 1 cut(s) 157
LpnPI CCDG 1 cut(s) 81
Lsp1109I GCAGC 1 cut(s) 166
MboII GAAGA 1 cut(s) 205
MluCI AATT 3 cut(s) 129, 134, 198
MluI ACGCGT 1 cut(s) 51
MlyI GAGTC 1 cut(s) 110
MseI TTAA 2 cut(s) 132, 188
MvnI CGCG 2 cut(s) 53, 206
PkrI GCNGC 2 cut(s) 156, 205
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
SaqAI TTAA 2 cut(s) 132, 188
SatI GCNGC 2 cut(s) 155, 204
SchI GAGTC 1 cut(s) 110
SetI ASST 1 cut(s) 179
SgeI CNNG 5 cut(s) 64, 66, 108, 154, 217
Sse9I AATT 3 cut(s) 129, 134, 198
SsiI CCGC 1 cut(s) 204
SspI AATATT 1 cut(s) 148
TasI AATT 3 cut(s) 129, 134, 198
TatI WGTACW 1 cut(s) 167
TauI GCSGC 1 cut(s) 206
Tru1I TTAA 2 cut(s) 132, 188
Tru9I TTAA 2 cut(s) 132, 188
TscAI CASTG 1 cut(s) 166
TseI GCWGC 1 cut(s) 154
TspRI CASTG 1 cut(s) 166
XapI RAATTY 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.