Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4220841 .. 4221710

Gene Structure 870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGATGTTGGTTTTAGTTATTTGATTGGCAGTGGTGGTTGTGAAGTGCTATCATATTCTTGTGTTCAGAAAAATCTAGAGATCCGTCATCGAAACTGTCCTGCATGTGGAACTCCGTTTGAATTGAAGAAAATTAGAAGAAGAAAAGATGTTAGGAAGGTGAGAAAGTGCCGAGAAAATTCAAGAAGAGTACATAGAAGAATGGTCTCAGTGCACGCCAACCTGTGTTCAGTTTCAAAAATAGTATCCGTGTTCAGTTTCAAAAATAATTTTATGAAATGGTCCTTTTTATATTTTGGAAGAAAGGTAAATCCATTACCAACACCACATAATTACAAGAAGGGAGGTACAACTACAATATACACACATCCACAATATGGACCAGCAAAGAAACAAGAGAGAAGCCCAAAAAAGACTTTTGAGCCTAAACAAAACATCGAAACACCCAACAGCTTCCAACCAACACCGCCATCGGCATGCCGCTTTCCACCCAATAGAAACCAACATCCCCTGCAAACCTCTGAACAACAGCCATACACAGCCCCAAGCATGGATGAAAAGAAGACTCCAAAATCCATCAGAGAGCACAACATCGTTGGCCACCACGCAACGAAAGAAACCAGTAGGAAGAAACCCACTAGCATCGATGCCATCAAAGACACCCTAAAGGAAAGAGGTGGTGTAAACACTCGGGCCGAAGCTCTACACACCTTCCGAGAGATCCGCGAGAAATCGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006464 GO:0006513 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009965 GO:0009987 GO:0010016 GO:0010154 GO:0010162 GO:0010228 GO:0010390 GO:0010431 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016574 GO:0019538 GO:0021700 GO:0022414 GO:0022611 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0033523 GO:0036211 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045087 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048609 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051276 GO:0061458 GO:0070647 GO:0071695 GO:0071704 GO:0071840 GO:0099402 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

247

Amino Acids

28.36

Weight (kDa)

10.24

Isoelectric Point (pI)

50.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	377
AccII	CGCG	2 cut(s)	726, 736
AciI	CCGC	3 cut(s)	467, 481, 724
AclWI	GGATC	2 cut(s)	76, 715
AcoI	YGGCCR	1 cut(s)	598
AcsI	RAATTY	1 cut(s)	178
AfaI	GTAC	2 cut(s)	192, 349
AfiI	CCNNNNNNNGG	3 cut(s)	107, 377, 550
AgsI	TTSAA	5 cut(s)	122, 127, 183, 237, 262
AluBI	AGCT	2 cut(s)	453, 701
AluI	AGCT	2 cut(s)	453, 701
Alw21I	GWGCWC	2 cut(s)	216, 588
Alw26I	GTCTC	1 cut(s)	211
Alw44I	GTGCAC	1 cut(s)	212
AlwI	GGATC	2 cut(s)	76, 715
Ama87I	CYCGRG	1 cut(s)	690
AoxI	GGCC	2 cut(s)	598, 693
ApaLI	GTGCAC	1 cut(s)	212
ApoI	RAATTY	1 cut(s)	178
AspS9I	GGNCC	3 cut(s)	282, 380, 693
AsuHPI	GGTGA	1 cut(s)	172
AvaI	CYCGRG	1 cut(s)	690
AvaII	GGWCC	2 cut(s)	282, 380
BaeGI	GKGCMC	1 cut(s)	216
BalI	TGGCCA	1 cut(s)	600
BbsI	GAAGAC	1 cut(s)	569
Bbv12I	GWGCWC	2 cut(s)	216, 588
BccI	CCATC	3 cut(s)	478, 584, 659
BciVI	GTATCC	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	2 cut(s)	77, 639
BfuI	GTATCC	1 cut(s)	256
BisI	GCNGC	1 cut(s)	481
BlsI	GCNGC	1 cut(s)	482
Bme18I	GGWCC	2 cut(s)	282, 380
BmeT110I	CYCGRG	1 cut(s)	690
BmgT120I	GGNCC	3 cut(s)	282, 380, 693
BmsI	GCATC	2 cut(s)	637, 651
BpiI	GAAGAC	1 cut(s)	569
Bsa29I	ATCGAT	1 cut(s)	645
BsaI	GGTCTC	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	3 cut(s)	107, 377, 550
Bse1I	ACTGG	1 cut(s)	621
BseCI	ATCGAT	1 cut(s)	645
BseGI	GGATG	4 cut(s)	10, 367, 505, 559
BseLI	CCNNNNNNNGG	3 cut(s)	107, 377, 550
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	621
BseSI	GKGCMC	1 cut(s)	216
Bsh1236I	CGCG	2 cut(s)	726, 736
BshFI	GGCC	2 cut(s)	600, 695
BshVI	ATCGAT	1 cut(s)	645
BsiHKAI	GWGCWC	2 cut(s)	216, 588
BsiHKCI	CYCGRG	1 cut(s)	690
BslI	CCNNNNNNNGG	3 cut(s)	107, 377, 550
BsmAI	GTCTC	1 cut(s)	211
BsnI	GGCC	2 cut(s)	600, 695
Bso31I	GGTCTC	1 cut(s)	211
BsoBI	CYCGRG	1 cut(s)	690
Bsp1286I	GDGCHC	2 cut(s)	216, 588
Bsp143I	GATC	2 cut(s)	81, 720
BspACI	CCGC	3 cut(s)	467, 481, 724
BspANI	GGCC	2 cut(s)	600, 695
BspCNI	CTCAG	1 cut(s)	221
BspDI	ATCGAT	1 cut(s)	645
BspFNI	CGCG	2 cut(s)	726, 736
BspPI	GGATC	2 cut(s)	76, 715
BspTNI	GGTCTC	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	621
BssMI	GATC	2 cut(s)	81, 720
Bst4CI	ACNGT	1 cut(s)	98
Bst6I	CTCTTC	1 cut(s)	181
BstC8I	GCNNGC	2 cut(s)	216, 478
BstDEI	CTNAG	1 cut(s)	208
BstF5I	GGATG	4 cut(s)	10, 367, 505, 559
BstFNI	CGCG	2 cut(s)	726, 736
BstKTI	GATC	2 cut(s)	84, 723
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	2 cut(s)	81, 720
BstNSI	RCATGY	2 cut(s)	108, 480
BstSLI	GKGCMC	1 cut(s)	216
BstUI	CGCG	2 cut(s)	726, 736
BstV2I	GAAGAC	1 cut(s)	569
BstX2I	RGATCY	2 cut(s)	81, 720
BstYI	RGATCY	2 cut(s)	81, 720
Bsu15I	ATCGAT	1 cut(s)	645
BsuI	GTATCC	1 cut(s)	256
BsuRI	GGCC	2 cut(s)	600, 695
BsuTUI	ATCGAT	1 cut(s)	645
BtsCI	GGATG	4 cut(s)	10, 367, 505, 559
BtsI	GCAGTG	1 cut(s)	37
BtsIMutI	CAGTG	2 cut(s)	37, 216
Cac8I	GCNNGC	2 cut(s)	216, 478
Cfr13I	GGNCC	3 cut(s)	282, 380, 693
ClaI	ATCGAT	1 cut(s)	645
Csp6I	GTAC	2 cut(s)	191, 348
CviAII	CATG	3 cut(s)	105, 477, 550
CviJI	RGCY	8 cut(s)	405, 424, 453, 532, 542, 600, 695, 701
CviKI_1	RGCY	8 cut(s)	405, 424, 453, 532, 542, 600, 695, 701
CviQI	GTAC	2 cut(s)	191, 348
DdeI	CTNAG	1 cut(s)	208
DpnI	GATC	2 cut(s)	83, 722
DpnII	GATC	2 cut(s)	81, 720
EaeI	YGGCCR	1 cut(s)	598
Eam1104I	CTCTTC	1 cut(s)	181
EarI	CTCTTC	1 cut(s)	181
Eco31I	GGTCTC	1 cut(s)	211
Eco47I	GGWCC	2 cut(s)	282, 380
Eco88I	CYCGRG	1 cut(s)	690
FaeI	CATG	3 cut(s)	108, 480, 553
FatI	CATG	3 cut(s)	104, 476, 549
Fnu4HI	GCNGC	1 cut(s)	481
FokI	GGATG	4 cut(s)	17, 354, 492, 566
Fsp4HI	GCNGC	1 cut(s)	481
FspBI	CTAG	2 cut(s)	77, 639
GluI	GCNGC	1 cut(s)	481
HaeIII	GGCC	2 cut(s)	600, 695
Hin1II	CATG	3 cut(s)	108, 480, 553
HinfI	GANTC	1 cut(s)	565
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	2 cut(s)	214, 685
Hpy188I	TCNGA	4 cut(s)	69, 523, 581, 716
Hpy188III	TCNNGA	2 cut(s)	77, 183
Hpy8I	GTNNAC	2 cut(s)	214, 685
HpyAV	CCTTC	3 cut(s)	151, 334, 721
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4V	TGCA	3 cut(s)	104, 214, 514
HpyF3I	CTNAG	1 cut(s)	208
Hsp92II	CATG	3 cut(s)	108, 480, 553
Kzo9I	GATC	2 cut(s)	81, 720
LpnPI	CCDG	5 cut(s)	114, 236, 396, 524, 634
LweI	GCATC	2 cut(s)	637, 651
MaeI	CTAG	2 cut(s)	77, 639
MalI	GATC	2 cut(s)	83, 722
MboI	GATC	2 cut(s)	81, 720
MboII	GAAGA	8 cut(s)	139, 150, 153, 198, 210, 312, 574, 640
MflI	RGATCY	2 cut(s)	81, 720
MhlI	GDGCHC	2 cut(s)	216, 588
MlsI	TGGCCA	1 cut(s)	600
MluCI	AATT	5 cut(s)	122, 132, 178, 268, 331
MluNI	TGGCCA	1 cut(s)	600
MlyI	GAGTC	1 cut(s)	559
MmeI	TCCRAC	1 cut(s)	481
MnlI	CCTC	3 cut(s)	338, 529, 668
Mox20I	TGGCCA	1 cut(s)	600
MscI	TGGCCA	1 cut(s)	600
MslI	CAYNNNNRTG	1 cut(s)	475
Msp20I	TGGCCA	1 cut(s)	600
MvnI	CGCG	2 cut(s)	726, 736
NdeII	GATC	2 cut(s)	81, 720
NlaIII	CATG	3 cut(s)	108, 480, 553
NmeAIII	GCCGAG	1 cut(s)	197
NspI	RCATGY	2 cut(s)	108, 480
PaeI	GCATGC	1 cut(s)	480
PflMI	CCANNNNNTGG	1 cut(s)	377
PkrI	GCNGC	1 cut(s)	482
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
PspPI	GGNCC	3 cut(s)	282, 380, 693
PsuI	RGATCY	2 cut(s)	81, 720
RsaI	GTAC	2 cut(s)	192, 349
RsaNI	GTAC	2 cut(s)	191, 348
RseI	CAYNNNNRTG	1 cut(s)	475
SatI	GCNGC	1 cut(s)	481
Sau3AI	GATC	2 cut(s)	81, 720
Sau96I	GGNCC	3 cut(s)	282, 380, 693
SchI	GAGTC	1 cut(s)	559
SduI	GDGCHC	2 cut(s)	216, 588
SetI	ASST	9 cut(s)	162, 225, 309, 349, 455, 521, 679, 703, 713
SfaNI	GCATC	2 cut(s)	637, 651
SinI	GGWCC	2 cut(s)	282, 380
SmiMI	CAYNNNNRTG	1 cut(s)	475
SphI	GCATGC	1 cut(s)	480
Sse9I	AATT	5 cut(s)	122, 132, 178, 268, 331
SsiI	CCGC	3 cut(s)	467, 481, 724
SspMI	CTAG	2 cut(s)	77, 639
TaaI	ACNGT	1 cut(s)	98
TaqI	TCGA	3 cut(s)	91, 438, 645
TasI	AATT	5 cut(s)	122, 132, 178, 268, 331
TatI	WGTACW	1 cut(s)	190
TauI	GCSGC	1 cut(s)	483
TscAI	CASTG	2 cut(s)	37, 216
TspDTI	ATGAA	2 cut(s)	290, 570
TspGWI	ACGGA	3 cut(s)	74, 105, 238
TspRI	CASTG	2 cut(s)	37, 216
Van91I	CCANNNNNTGG	1 cut(s)	377
VneI	GTGCAC	1 cut(s)	212
VpaK11BI	GGWCC	2 cut(s)	282, 380
XapI	RAATTY	1 cut(s)	178
XbaI	TCTAGA	1 cut(s)	76
XceI	RCATGY	2 cut(s)	108, 480
XspI	CTAG	2 cut(s)	77, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.