pycom10g04130

ubiquitin-like-specific protease

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
N/A
Physical Location & Seq
Forward (+)
4403929 .. 4405519
1591 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 549 bp
ATGGACGAAACAGACAAGCTAGAAACTGGCATGAAGTGTCCTGAAGATCTGTCCACCTTAACAAAAAAAGTTCATGGTAATTCCTCCAGTTCCAATGCTAGTGGAATTGAAATTTCGTTGTTAGGAGATTCTCCTCCTGTACAGGTTGCTTCTCGGGTTATGAGTTTAATGTCGCCAATAGAGGAAGTTGACGATAGTGATGATCAGATTGCTGATTCACCGGTCAACGTGGAAGATTGTCAGCAAGGGACTGGATTAGCTTTGAAATCACTCCCAAAATCCTGTTTTGAGAATAGATTTAGAGTTGCTAGGCATATCGGAGGAAATGTTGATGCATCTAGTAGTGGATTACAGAATTTATCTGCAGTGTGGATAGATGAAAACCGTTCGATATTGGAAAATGAGGCTTTGAACTATCCAAGGAAAACAGATGCACCTGAATCTTCAAGTGAAAATTACAAAGATTATGTTGTGCTGGATTCTCAAGATGAACGAAGACGACATGCAAGGCGACTACAAAGATTGCGTTGTGCTGGATTCTCAAGATGA

Protein Analysis

183

Amino Acids

20.09

Weight (kDa)

4.94

Isoelectric Point (pI)

75.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 111, 355
AcuI CTGAAG 1 cut(s) 63
AfaI GTAC 1 cut(s) 141
AgeI ACCGGT 1 cut(s) 220
AgsI TTSAA 4 cut(s) 110, 265, 412, 447
AluBI AGCT 2 cut(s) 19, 260
AluI AGCT 2 cut(s) 19, 260
Ama87I CYCGRG 1 cut(s) 153
ApoI RAATTY 2 cut(s) 111, 355
AsiGI ACCGGT 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 210
AvaI CYCGRG 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 502
BclI TGATCA 1 cut(s) 202
BfaI CTAG 4 cut(s) 20, 99, 309, 339
BfmI CTRYAG 1 cut(s) 363
BglII AGATCT 1 cut(s) 46
BmeT110I CYCGRG 1 cut(s) 153
BmsI GCATC 3 cut(s) 322, 344, 421
BpiI GAAGAC 1 cut(s) 502
BpmI CTGGAG 1 cut(s) 70
BpuEI CTTGAG 2 cut(s) 468, 526
BsaJI CCNNGG 1 cut(s) 419
BsaWI WCCGGW 1 cut(s) 220
BsaXI ACNNNNNCTCC 2 cut(s) 312, 342
Bse118I RCCGGY 1 cut(s) 220
Bse1I ACTGG 3 cut(s) 31, 87, 256
BseDI CCNNGG 1 cut(s) 419
BseNI ACTGG 3 cut(s) 31, 87, 256
BseRI GAGGAG 1 cut(s) 123
BshTI ACCGGT 1 cut(s) 220
BsiHKCI CYCGRG 1 cut(s) 153
BsiSI CCGG 1 cut(s) 221
BslFI GGGAC 1 cut(s) 262
BsmFI GGGAC 1 cut(s) 262
BsoBI CYCGRG 1 cut(s) 153
Bsp1407I TGTACA 1 cut(s) 139
Bsp143I GATC 2 cut(s) 46, 202
BspMAI CTGCAG 1 cut(s) 367
BsrFI RCCGGY 1 cut(s) 220
BsrGI TGTACA 1 cut(s) 139
BsrI ACTGG 3 cut(s) 31, 87, 256
BssAI RCCGGY 1 cut(s) 220
BssECI CCNNGG 1 cut(s) 419
BssMI GATC 2 cut(s) 46, 202
BssT1I CCWWGG 1 cut(s) 419
Bst4CI ACNGT 1 cut(s) 386
BstAUI TGTACA 1 cut(s) 139
BstKTI GATC 2 cut(s) 49, 205
BstMBI GATC 2 cut(s) 46, 202
BstNSI RCATGY 1 cut(s) 506
BstSFI CTRYAG 1 cut(s) 363
BstV2I GAAGAC 1 cut(s) 502
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BtsI GCAGTG 1 cut(s) 372
BtsIMutI CAGTG 1 cut(s) 372
Cfr10I RCCGGY 1 cut(s) 220
Csp6I GTAC 1 cut(s) 140
CspAI ACCGGT 1 cut(s) 220
CspCI CAANNNNNGTGG 2 cut(s) 82, 117
CviAII CATG 3 cut(s) 31, 74, 503
CviJI RGCY 3 cut(s) 19, 260, 407
CviKI_1 RGCY 3 cut(s) 19, 260, 407
CviQI GTAC 1 cut(s) 140
DpnI GATC 2 cut(s) 48, 204
DpnII GATC 2 cut(s) 46, 202
Eco130I CCWWGG 1 cut(s) 419
Eco57I CTGAAG 1 cut(s) 63
Eco88I CYCGRG 1 cut(s) 153
EcoT14I CCWWGG 1 cut(s) 419
EcoT22I ATGCAT 1 cut(s) 337
ErhI CCWWGG 1 cut(s) 419
FaeI CATG 3 cut(s) 34, 77, 506
FaiI YATR 6 cut(s) 32, 75, 161, 315, 468, 504
FaqI GGGAC 1 cut(s) 262
FatI CATG 3 cut(s) 30, 73, 502
FbaI TGATCA 1 cut(s) 202
FspBI CTAG 4 cut(s) 20, 99, 309, 339
GsuI CTGGAG 1 cut(s) 70
HapII CCGG 1 cut(s) 221
Hin1II CATG 3 cut(s) 34, 77, 506
HincII GTYRAC 2 cut(s) 190, 226
HindII GTYRAC 2 cut(s) 190, 226
HinfI GANTC 5 cut(s) 128, 215, 440, 479, 537
HpaII CCGG 1 cut(s) 221
HphI GGTGA 1 cut(s) 210
Hpy166II GTNNAC 3 cut(s) 54, 190, 226
Hpy188I TCNGA 2 cut(s) 207, 320
Hpy188III TCNNGA 3 cut(s) 41, 485, 543
Hpy8I GTNNAC 3 cut(s) 54, 190, 226
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 4 cut(s) 335, 365, 434, 506
HpySE526I ACGT 1 cut(s) 228
Hsp92II CATG 3 cut(s) 34, 77, 506
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 2 cut(s) 46, 202
LweI GCATC 3 cut(s) 322, 344, 421
MaeI CTAG 4 cut(s) 20, 99, 309, 339
MaeII ACGT 1 cut(s) 228
MalI GATC 2 cut(s) 48, 204
MboI GATC 2 cut(s) 46, 202
MboII GAAGA 4 cut(s) 56, 245, 435, 507
MflI RGATCY 1 cut(s) 46
MluCI AATT 5 cut(s) 79, 105, 111, 355, 454
MnlI CCTC 5 cut(s) 94, 144, 175, 314, 397
Mph1103I ATGCAT 1 cut(s) 337
MseI TTAA 2 cut(s) 59, 167
MspI CCGG 1 cut(s) 221
NdeII GATC 2 cut(s) 46, 202
NlaIII CATG 3 cut(s) 34, 77, 506
NsiI ATGCAT 1 cut(s) 337
NspI RCATGY 1 cut(s) 506
PfeI GAWTC 5 cut(s) 128, 215, 440, 479, 537
PinAI ACCGGT 1 cut(s) 220
PstI CTGCAG 1 cut(s) 367
PsuI RGATCY 1 cut(s) 46
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
SaqAI TTAA 2 cut(s) 59, 167
Sau3AI GATC 2 cut(s) 46, 202
SetI ASST 6 cut(s) 21, 59, 147, 231, 262, 439
SfaNI GCATC 3 cut(s) 322, 344, 421
SfcI CTRYAG 1 cut(s) 363
SmlI CTYRAG 2 cut(s) 483, 541
SmoI CTYRAG 2 cut(s) 483, 541
Sse9I AATT 5 cut(s) 79, 105, 111, 355, 454
SspMI CTAG 4 cut(s) 20, 99, 309, 339
StyI CCWWGG 1 cut(s) 419
TaaI ACNGT 1 cut(s) 386
TaiI ACGT 1 cut(s) 231
TaqI TCGA 1 cut(s) 389
TasI AATT 5 cut(s) 79, 105, 111, 355, 454
TatI WGTACW 1 cut(s) 139
TfiI GAWTC 5 cut(s) 128, 215, 440, 479, 537
Tru1I TTAA 2 cut(s) 59, 167
Tru9I TTAA 2 cut(s) 59, 167
TscAI CASTG 1 cut(s) 372
TspDTI ATGAA 4 cut(s) 47, 62, 393, 504
TspRI CASTG 1 cut(s) 372
XapI RAATTY 2 cut(s) 111, 355
XceI RCATGY 1 cut(s) 506
XspI CTAG 4 cut(s) 20, 99, 309, 339
Zsp2I ATGCAT 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.