Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

5078984 .. 5081915

Gene Structure 2932 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGTCCTTGGAATTCGGGCAATGCCCGGCCCATCCAGCATGCAACTACCGAGGGAGATTACAAATTATAGCAGTTCCTGTCGACAACTTTCGCTTGGTTCGGCAGGAGACACACCAATCACTGAGCGAGGTAGAGAGAGAGAGATCAGAGATCCCAAATCCACGCTTCGCAATGTCTTCAACATTCAGTGGCGATGAAACGGCGCCGTTCTTCGGCTTCCTCGGCGCTGCTGCTGCCCTCGTTTTCTCATGTATGGGAGCTGCCTATGGCACCGCAAAGAGTGGTGTTGGTGTGGCATCTATGGGAGTGATGAGGCCTGAGCTGGTGATGAAATCCATTGTTCCGGTTGTTATGGCTGGAGTTCTGGGTATTTATGGCCTTATTATTGCTGTTATCATCAGTACCGGGATTAACCCTAAGGCCAAGTCATATTACCTCTTTGATGGTTATGCACATCTCTCATCTGGTCTTGCTTGCGGTCTCGCTGGGCTCTCTGCTGGAATGGCAATTGGTATTGTTGGTGACGCTGGTGTAAGAGCTAATGCACAGCAGCCAAAACTCTTTGTTGGGATGATCGCTCATTCTCATCTTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000220 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006885 GO:0007035 GO:0008150 GO:0008324 GO:0009507 GO:0009536 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016021 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0019829 GO:0022613 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0031224 GO:0032991 GO:0033176 GO:0033177 GO:0033179 GO:0034220 GO:0036442 GO:0042254 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045851 GO:0046961 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051452 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071840 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05323

Pfam Domains

Protein Families

ATP-synt_C RBFA

Protein Analysis

199

Amino Acids

20.74

Weight (kDa)

8.31

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	74 - 133	5.6e-15	ATP synthase subunit C
ATP-synt_C	PF00137	154 - 192	1.4e-09	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	202, 269
AccI	GTMKAC	1 cut(s)	81
AciI	CCGC	2 cut(s)	273, 477
AclWI	GGATC	1 cut(s)	145
AcsI	RAATTY	1 cut(s)	11
AcyI	GRCGYC	1 cut(s)	203
AfaI	GTAC	1 cut(s)	403
AfiI	CCNNNNNNNGG	1 cut(s)	212
AgsI	TTSAA	1 cut(s)	180
AluBI	AGCT	3 cut(s)	260, 322, 539
AluI	AGCT	3 cut(s)	260, 322, 539
Alw26I	GTCTC	2 cut(s)	101, 485
AlwI	GGATC	1 cut(s)	145
AlwNI	CAGNNNCTG	1 cut(s)	77
AoxI	GGCC	4 cut(s)	27, 314, 376, 420
ApeKI	GCWGC	5 cut(s)	227, 230, 233, 260, 550
ApoI	RAATTY	1 cut(s)	11
AspLEI	GCGC	2 cut(s)	205, 227
AspS9I	GGNCC	1 cut(s)	28
AsuC2I	CCSGG	2 cut(s)	26, 406
AsuHPI	GGTGA	2 cut(s)	337, 533
AxyI	CCTNAGG	1 cut(s)	417
BanI	GGYRCC	2 cut(s)	202, 269
BanII	GRGCYC	1 cut(s)	492
BbsI	GAAGAC	1 cut(s)	168
BbvI	GCAGC	5 cut(s)	214, 217, 220, 247, 562
BccI	CCATC	2 cut(s)	39, 437
BceAI	ACGGC	2 cut(s)	190, 216
BcnI	CCSGG	2 cut(s)	26, 406
BcoDI	GTCTC	2 cut(s)	101, 485
BfoI	RGCGCY	2 cut(s)	206, 228
BisI	GCNGC	5 cut(s)	228, 231, 234, 261, 551
BlsI	GCNGC	5 cut(s)	229, 232, 235, 262, 552
Bme1390I	CCNGG	2 cut(s)	26, 406
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	2 cut(s)	204, 271
BmrFI	CCNGG	2 cut(s)	26, 406
BmsI	GCATC	1 cut(s)	305
BpiI	GAAGAC	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	378
Bpu10I	CCTNAGC	1 cut(s)	318
BpuMI	CCSGG	2 cut(s)	26, 406
BsaHI	GRCGYC	1 cut(s)	203
BsaI	GGTCTC	1 cut(s)	485
BsaJI	CCNNGG	3 cut(s)	6, 49, 220
BsaWI	WCCGGW	1 cut(s)	343
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse21I	CCTNAGG	1 cut(s)	417
Bse3DI	GCAATG	2 cut(s)	26, 177
BseDI	CCNNGG	3 cut(s)	6, 49, 220
BseGI	GGATG	2 cut(s)	31, 576
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMI	GCAATG	2 cut(s)	26, 177
BseMII	CTCAG	2 cut(s)	113, 309
BseXI	GCAGC	5 cut(s)	214, 217, 220, 247, 562
BseYI	CCCAGC	1 cut(s)	485
BshFI	GGCC	4 cut(s)	29, 316, 378, 422
BshNI	GGYRCC	2 cut(s)	202, 269
BsiSI	CCGG	3 cut(s)	26, 344, 405
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmAI	GTCTC	2 cut(s)	101, 485
BsnI	GGCC	4 cut(s)	29, 316, 378, 422
Bso31I	GGTCTC	1 cut(s)	485
Bsp1286I	GDGCHC	1 cut(s)	492
Bsp143I	GATC	3 cut(s)	143, 150, 573
BspACI	CCGC	2 cut(s)	273, 477
BspANI	GGCC	4 cut(s)	29, 316, 378, 422
BspCNI	CTCAG	2 cut(s)	114, 310
BspLI	GGNNCC	2 cut(s)	204, 271
BspPI	GGATC	1 cut(s)	145
BspT107I	GGYRCC	2 cut(s)	202, 269
BspTNI	GGTCTC	1 cut(s)	485
BsrDI	GCAATG	2 cut(s)	26, 177
BssECI	CCNNGG	3 cut(s)	6, 49, 220
BssMI	GATC	3 cut(s)	143, 150, 573
BssNI	GRCGYC	1 cut(s)	203
BssT1I	CCWWGG	1 cut(s)	6
BstACI	GRCGYC	1 cut(s)	203
BstC8I	GCNNGC	2 cut(s)	40, 475
BstDEI	CTNAG	3 cut(s)	122, 318, 417
BstF5I	GGATG	2 cut(s)	31, 576
BstH2I	RGCGCY	2 cut(s)	206, 228
BstHHI	GCGC	2 cut(s)	205, 227
BstKTI	GATC	3 cut(s)	146, 153, 576
BstMAI	GTCTC	2 cut(s)	101, 485
BstMBI	GATC	3 cut(s)	143, 150, 573
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 222, 233, 503
BstNSI	RCATGY	1 cut(s)	42
BstSCI	CCNGG	2 cut(s)	24, 404
BstV1I	GCAGC	5 cut(s)	214, 217, 220, 247, 562
BstV2I	GAAGAC	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	150
Bsu36I	CCTNAGG	1 cut(s)	417
BsuRI	GGCC	4 cut(s)	29, 316, 378, 422
BtgZI	GCGATG	1 cut(s)	207
BtsCI	GGATG	2 cut(s)	31, 576
BtsIMutI	CAGTG	2 cut(s)	119, 193
Cac8I	GCNNGC	2 cut(s)	40, 475
CaiI	CAGNNNCTG	1 cut(s)	77
CfoI	GCGC	2 cut(s)	205, 227
Cfr13I	GGNCC	1 cut(s)	28
CseI	GACGC	1 cut(s)	533
Csp6I	GTAC	1 cut(s)	402
CviAII	CATG	2 cut(s)	39, 249
CviQI	GTAC	1 cut(s)	402
DdeI	CTNAG	3 cut(s)	122, 318, 417
DinI	GGCGCC	1 cut(s)	204
DpnI	GATC	3 cut(s)	145, 152, 575
DpnII	GATC	3 cut(s)	143, 150, 573
Eco130I	CCWWGG	1 cut(s)	6
Eco147I	AGGCCT	1 cut(s)	316
Eco24I	GRGCYC	1 cut(s)	492
Eco31I	GGTCTC	1 cut(s)	485
Eco81I	CCTNAGG	1 cut(s)	417
EcoRI	GAATTC	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	492
EgeI	GGCGCC	1 cut(s)	204
EheI	GGCGCC	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	2 cut(s)	42, 252
FatI	CATG	2 cut(s)	38, 248
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	5 cut(s)	228, 231, 234, 261, 551
FokI	GGATG	2 cut(s)	18, 583
FriOI	GRGCYC	1 cut(s)	492
Fsp4HI	GCNGC	5 cut(s)	228, 231, 234, 261, 551
GlaI	GCGC	2 cut(s)	204, 226
GluI	GCNGC	5 cut(s)	228, 231, 234, 261, 551
GsaI	CCCAGC	1 cut(s)	489
GsuI	CTGGAG	1 cut(s)	378
HaeII	RGCGCY	2 cut(s)	206, 228
HaeIII	GGCC	4 cut(s)	29, 316, 378, 422
HapII	CCGG	3 cut(s)	26, 344, 405
HgaI	GACGC	1 cut(s)	533
HhaI	GCGC	2 cut(s)	205, 227
Hin1I	GRCGYC	1 cut(s)	203
Hin1II	CATG	2 cut(s)	42, 252
Hin6I	GCGC	2 cut(s)	203, 225
HinP1I	GCGC	2 cut(s)	203, 225
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HpaII	CCGG	3 cut(s)	26, 344, 405
HphI	GGTGA	2 cut(s)	337, 533
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	1 cut(s)	148
Hpy8I	GTNNAC	1 cut(s)	82
HpyCH4V	TGCA	3 cut(s)	42, 452, 545
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 222, 233, 503
HpyF3I	CTNAG	3 cut(s)	122, 318, 417
Hsp92I	GRCGYC	1 cut(s)	203
Hsp92II	CATG	2 cut(s)	42, 252
HspAI	GCGC	2 cut(s)	203, 225
KasI	GGCGCC	1 cut(s)	202
Kzo9I	GATC	3 cut(s)	143, 150, 573
LmnI	GCTCC	1 cut(s)	257
Lsp1109I	GCAGC	5 cut(s)	214, 217, 220, 247, 562
LweI	GCATC	1 cut(s)	305
MaeIII	GTNAC	1 cut(s)	521
MalI	GATC	3 cut(s)	145, 152, 575
MboI	GATC	3 cut(s)	143, 150, 573
MboII	GAAGA	2 cut(s)	168, 202
MfeI	CAATTG	1 cut(s)	507
MflI	RGATCY	1 cut(s)	150
MhlI	GDGCHC	1 cut(s)	492
MluCI	AATT	3 cut(s)	11, 63, 507
Mly113I	GGCGCC	1 cut(s)	203
MnlI	CCTC	6 cut(s)	44, 121, 230, 248, 306, 446
MseI	TTAA	1 cut(s)	411
MspI	CCGG	3 cut(s)	26, 344, 405
MspR9I	CCNGG	2 cut(s)	26, 406
MunI	CAATTG	1 cut(s)	507
MwoI	GCNNNNNNNGC	4 cut(s)	35, 222, 233, 503
NarI	GGCGCC	1 cut(s)	203
NciI	CCSGG	2 cut(s)	26, 406
NdeII	GATC	3 cut(s)	143, 150, 573
NlaIII	CATG	2 cut(s)	42, 252
NlaIV	GGNNCC	2 cut(s)	204, 271
NmeAIII	GCCGAG	1 cut(s)	201
NmuCI	GTSAC	1 cut(s)	521
NspI	RCATGY	1 cut(s)	42
PaeI	GCATGC	1 cut(s)	42
PceI	AGGCCT	1 cut(s)	316
PkrI	GCNGC	5 cut(s)	229, 232, 235, 262, 552
PluTI	GGCGCC	1 cut(s)	206
PspFI	CCCAGC	1 cut(s)	485
PspN4I	GGNNCC	2 cut(s)	204, 271
PspPI	GGNCC	1 cut(s)	28
PstNI	CAGNNNCTG	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	150
RsaI	GTAC	1 cut(s)	403
RsaNI	GTAC	1 cut(s)	402
SalI	GTCGAC	1 cut(s)	80
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	5 cut(s)	228, 231, 234, 261, 551
Sau3AI	GATC	3 cut(s)	143, 150, 573
Sau96I	GGNCC	1 cut(s)	28
ScrFI	CCNGG	2 cut(s)	26, 406
SduI	GDGCHC	1 cut(s)	492
SetI	ASST	5 cut(s)	132, 262, 324, 438, 541
SfaNI	GCATC	1 cut(s)	305
SfoI	GGCGCC	1 cut(s)	204
SphI	GCATGC	1 cut(s)	42
Sse9I	AATT	3 cut(s)	11, 63, 507
SseBI	AGGCCT	1 cut(s)	316
SsiI	CCGC	2 cut(s)	273, 477
SspDI	GGCGCC	1 cut(s)	202
StuI	AGGCCT	1 cut(s)	316
StyD4I	CCNGG	2 cut(s)	24, 404
StyI	CCWWGG	1 cut(s)	6
TaqI	TCGA	1 cut(s)	81
TasI	AATT	3 cut(s)	11, 63, 507
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	2 cut(s)	126, 193
TseFI	GTSAC	1 cut(s)	521
TseI	GCWGC	5 cut(s)	227, 230, 233, 260, 550
Tsp45I	GTSAC	1 cut(s)	521
TspDTI	ATGAA	2 cut(s)	210, 344
TspRI	CASTG	2 cut(s)	126, 193
XapI	RAATTY	1 cut(s)	11
XceI	RCATGY	1 cut(s)	42
XmiI	GTMKAC	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.