Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

5618924 .. 5620211

Gene Structure 1288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGATAAAGAACTCGTCTGTGAAGCCAAACAACGTTTCTCTCCCCCAAGTCAACTTTATCCATTTTTATTTTCCCCAGAAAATTGCTTTCCATCAATTCCCGGAAGAACACGCAATTGCTAGAGGTGAAATCCAGGCTACATGTGGGTTTGTGGGGTTTGAGGGTCCTCTGCATAATCTGAACAAGATGAGTGTGCTGGGTTTAGCTTCTTCAAGGACAGCAGCAGCAATTGTTGTAGTGCTGGGTTTGGTCTTGAGCTTGGGAGTGGTGTGCAATGGAGGCAAAACAAGTAGTTTTGTGAGAAGGGTTGAGAAAACTGTGGACATGCCACTTGATAGTGATGTCTTCAAGGTCCCTCCTGGCTTTAATGCACCTCAACGAGTTCATATAACACAAGGAGACCAGCTGGGAGCAGCAGTGATTGTGTCATGGGTTACTGTGGATGAACCCGGTTCCAGTACGGTGCTTTACTGGAGTGCAAATAGCAAGAAAAAGAAGGCCAAGGGCAAAATTACAACCTATAAATTCTATAACTACACTTCTGGTTATATTCACCACACCACTGTCAGAAATTTAAAGGTGAATTCATGTACCCGTATGTTTTTTAGTTCAAATTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005506 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008199 GO:0008270 GO:0009267 GO:0009505 GO:0009506 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030054 GO:0030145 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043167 GO:0043169 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0055044 GO:0071496 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

207

Amino Acids

22.64

Weight (kDa)

9.74

Isoelectric Point (pI)

36.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pur_ac_phosph_N	PF16656	125 - 195	3.2e-12	Purple acid Phosphatase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	33
AcsI	RAATTY	4 cut(s)	524, 571, 583, 613
AfaI	GTAC	2 cut(s)	460, 592
AflIII	ACRYGT	1 cut(s)	140
AgsI	TTSAA	3 cut(s)	213, 349, 612
AjnI	CCWGG	2 cut(s)	132, 358
AjuI	GAANNNNNNNTTGG	2 cut(s)	19, 51
AluBI	AGCT	3 cut(s)	206, 258, 406
AluI	AGCT	3 cut(s)	206, 258, 406
Alw26I	GTCTC	1 cut(s)	393
AoxI	GGCC	1 cut(s)	498
ApeKI	GCWGC	3 cut(s)	221, 224, 413
ApoI	RAATTY	4 cut(s)	524, 571, 583, 613
AspS9I	GGNCC	2 cut(s)	164, 352
AsuC2I	CCSGG	2 cut(s)	101, 450
AsuHPI	GGTGA	3 cut(s)	137, 545, 592
AvaII	GGWCC	2 cut(s)	164, 352
BbsI	GAAGAC	1 cut(s)	337
BbvI	GCAGC	3 cut(s)	233, 236, 425
BccI	CCATC	1 cut(s)	99
BciT130I	CCWGG	2 cut(s)	134, 360
BcnI	CCSGG	2 cut(s)	101, 450
BcoDI	GTCTC	1 cut(s)	393
BfaI	CTAG	1 cut(s)	120
BisI	GCNGC	3 cut(s)	222, 225, 414
BlsI	GCNGC	3 cut(s)	223, 226, 415
Bme1390I	CCNGG	4 cut(s)	101, 134, 360, 450
Bme18I	GGWCC	2 cut(s)	164, 352
BmgT120I	GGNCC	2 cut(s)	164, 352
BmiI	GGNNCC	3 cut(s)	165, 354, 454
BmrFI	CCNGG	4 cut(s)	101, 134, 360, 450
BpiI	GAAGAC	1 cut(s)	337
BpmI	CTGGAG	1 cut(s)	493
BpuEI	CTTGAG	1 cut(s)	274
BpuMI	CCSGG	2 cut(s)	101, 450
BsaI	GGTCTC	1 cut(s)	393
BsaJI	CCNNGG	1 cut(s)	501
BsaXI	ACNNNNNCTCC	2 cut(s)	402, 432
Bse1I	ACTGG	2 cut(s)	456, 476
Bse3DI	GCAATG	1 cut(s)	280
BseBI	CCWGG	2 cut(s)	134, 360
BseDI	CCNNGG	1 cut(s)	501
BseGI	GGATG	1 cut(s)	448
BseMI	GCAATG	1 cut(s)	280
BseNI	ACTGG	2 cut(s)	456, 476
BseXI	GCAGC	3 cut(s)	233, 236, 425
BseYI	CCCAGC	3 cut(s)	196, 241, 406
BshFI	GGCC	1 cut(s)	500
BsiSI	CCGG	2 cut(s)	101, 450
BslFI	GGGAC	1 cut(s)	338
BsmAI	GTCTC	1 cut(s)	393
BsmFI	GGGAC	1 cut(s)	338
BsnI	GGCC	1 cut(s)	500
Bso31I	GGTCTC	1 cut(s)	393
BspANI	GGCC	1 cut(s)	500
BspLI	GGNNCC	3 cut(s)	165, 354, 454
BspTNI	GGTCTC	1 cut(s)	393
BsrDI	GCAATG	1 cut(s)	280
BsrI	ACTGG	2 cut(s)	456, 476
BssECI	CCNNGG	1 cut(s)	501
BssT1I	CCWWGG	1 cut(s)	501
Bst2UI	CCWGG	2 cut(s)	134, 360
Bst4CI	ACNGT	4 cut(s)	319, 439, 463, 565
BstF5I	GGATG	1 cut(s)	448
BstMAI	GTCTC	1 cut(s)	393
BstMWI	GCNNNNNNNGC	1 cut(s)	279
BstNI	CCWGG	2 cut(s)	134, 360
BstNSI	RCATGY	2 cut(s)	144, 328
BstSCI	CCNGG	4 cut(s)	99, 132, 358, 448
BstV1I	GCAGC	3 cut(s)	233, 236, 425
BstV2I	GAAGAC	1 cut(s)	337
BsuRI	GGCC	1 cut(s)	500
BtsCI	GGATG	1 cut(s)	448
BtsI	GCAGTG	1 cut(s)	423
BtsIMutI	CAGTG	2 cut(s)	423, 561
Cfr13I	GGNCC	2 cut(s)	164, 352
Csp6I	GTAC	2 cut(s)	459, 591
CviAII	CATG	4 cut(s)	141, 325, 429, 588
CviJI	RGCY	7 cut(s)	25, 137, 206, 258, 363, 406, 500
CviKI_1	RGCY	7 cut(s)	25, 137, 206, 258, 363, 406, 500
CviQI	GTAC	2 cut(s)	459, 591
DraI	TTTAAA	1 cut(s)	576
Eco130I	CCWWGG	1 cut(s)	501
Eco31I	GGTCTC	1 cut(s)	393
Eco47I	GGWCC	2 cut(s)	164, 352
EcoO109I	RGGNCCY	2 cut(s)	164, 352
EcoRI	GAATTC	1 cut(s)	583
EcoRII	CCWGG	2 cut(s)	132, 358
EcoT14I	CCWWGG	1 cut(s)	501
ErhI	CCWWGG	1 cut(s)	501
FaeI	CATG	4 cut(s)	144, 328, 432, 591
FaqI	GGGAC	1 cut(s)	338
FatI	CATG	4 cut(s)	140, 324, 428, 587
Fnu4HI	GCNGC	3 cut(s)	222, 225, 414
FokI	GGATG	1 cut(s)	455
Fsp4HI	GCNGC	3 cut(s)	222, 225, 414
FspBI	CTAG	1 cut(s)	120
GluI	GCNGC	3 cut(s)	222, 225, 414
GsaI	CCCAGC	3 cut(s)	200, 245, 410
GsuI	CTGGAG	1 cut(s)	493
HaeIII	GGCC	1 cut(s)	500
HapII	CCGG	2 cut(s)	101, 450
Hin1II	CATG	4 cut(s)	144, 328, 432, 591
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HpaII	CCGG	2 cut(s)	101, 450
HphI	GGTGA	3 cut(s)	137, 545, 592
Hpy166II	GTNNAC	2 cut(s)	52, 322
Hpy188I	TCNGA	2 cut(s)	180, 569
Hpy188III	TCNNGA	1 cut(s)	253
Hpy8I	GTNNAC	2 cut(s)	52, 322
HpyAV	CCTTC	2 cut(s)	297, 490
HpyCH4III	ACNGT	4 cut(s)	319, 439, 463, 565
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	4 cut(s)	172, 273, 371, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	279
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	4 cut(s)	144, 328, 432, 591
LmnI	GCTCC	1 cut(s)	410
Lsp1109I	GCAGC	3 cut(s)	233, 236, 425
MaeI	CTAG	1 cut(s)	120
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	433
MboII	GAAGA	3 cut(s)	116, 201, 337
MfeI	CAATTG	2 cut(s)	114, 228
MluCI	AATT	9 cut(s)	81, 95, 114, 228, 510, 524, 571, 583, 613
MnlI	CCTC	6 cut(s)	116, 154, 177, 272, 366, 384
MseI	TTAA	2 cut(s)	366, 575
MspA1I	CMGCKG	1 cut(s)	406
MspI	CCGG	2 cut(s)	101, 450
MspR9I	CCNGG	4 cut(s)	101, 134, 360, 450
MunI	CAATTG	2 cut(s)	114, 228
MvaI	CCWGG	2 cut(s)	134, 360
MwoI	GCNNNNNNNGC	1 cut(s)	279
NciI	CCSGG	2 cut(s)	101, 450
NlaIII	CATG	4 cut(s)	144, 328, 432, 591
NlaIV	GGNNCC	3 cut(s)	165, 354, 454
NspI	RCATGY	2 cut(s)	144, 328
PciI	ACATGT	1 cut(s)	140
PfoI	TCCNGGA	1 cut(s)	99
PkrI	GCNGC	3 cut(s)	223, 226, 415
PpuMI	RGGWCCY	2 cut(s)	164, 352
PscI	ACATGT	1 cut(s)	140
Psp1406I	AACGTT	1 cut(s)	33
Psp5II	RGGWCCY	2 cut(s)	164, 352
Psp6I	CCWGG	2 cut(s)	132, 358
PspFI	CCCAGC	3 cut(s)	196, 241, 406
PspGI	CCWGG	2 cut(s)	132, 358
PspN4I	GGNNCC	3 cut(s)	165, 354, 454
PspPI	GGNCC	2 cut(s)	164, 352
PspPPI	RGGWCCY	2 cut(s)	164, 352
PvuII	CAGCTG	1 cut(s)	406
RsaI	GTAC	2 cut(s)	460, 592
RsaNI	GTAC	2 cut(s)	459, 591
SaqAI	TTAA	2 cut(s)	366, 575
SatI	GCNGC	3 cut(s)	222, 225, 414
Sau96I	GGNCC	2 cut(s)	164, 352
ScrFI	CCNGG	4 cut(s)	101, 134, 360, 450
SetI	ASST	9 cut(s)	36, 127, 208, 260, 354, 376, 408, 521, 582
SinI	GGWCC	2 cut(s)	164, 352
SmlI	CTYRAG	1 cut(s)	253
SmoI	CTYRAG	1 cut(s)	253
Sse9I	AATT	9 cut(s)	81, 95, 114, 228, 510, 524, 571, 583, 613
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	4 cut(s)	99, 132, 358, 448
StyI	CCWWGG	1 cut(s)	501
TaaI	ACNGT	4 cut(s)	319, 439, 463, 565
TaiI	ACGT	1 cut(s)	36
TasI	AATT	9 cut(s)	81, 95, 114, 228, 510, 524, 571, 583, 613
Tru1I	TTAA	2 cut(s)	366, 575
Tru9I	TTAA	2 cut(s)	366, 575
TscAI	CASTG	2 cut(s)	423, 568
TseI	GCWGC	3 cut(s)	221, 224, 413
TspDTI	ATGAA	3 cut(s)	374, 459, 576
TspRI	CASTG	2 cut(s)	423, 568
VpaK11BI	GGWCC	2 cut(s)	164, 352
XapI	RAATTY	4 cut(s)	524, 571, 583, 613
XceI	RCATGY	2 cut(s)	144, 328
XcmI	CCANNNNNNNNNTGG	1 cut(s)	140
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.