Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

5976602 .. 5976960

Gene Structure 359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCTCATAAAAGTGATGGGGGGCTCGGTCACCGAGCTCGAGGAGGGCGAATCCACTACGCCCTCGATTCCACCCTTGTCAAGCCCGTCTACACCTTCAAATCCCTCAACGGCGAGATTGATTTTCCACTATCTTCTTCGAGATTGATGCCAATTAGTGCACATTCCTCTTCGCCAACTAACTCCAGCCGCTCAAAGTCTCCAGGGACGTCAAATCGACAGTGTACAACCTCGAGGGGAAGACGAACGACCGTTCGATTACCTCTTTTCCGGGAAAACCATTATCCTAGGTTTACTTCCTGTTATCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012505 GO:0016192 GO:0030135 GO:0030136 GO:0030276 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0032050 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0070013 GO:0072583 GO:0097708 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lung_7-TM_R

Protein Analysis

104

Amino Acids

11.47

Weight (kDa)

10.91

Isoelectric Point (pI)

75.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	212
AbsI	CCTCGAGG	1 cut(s)	232
AccBSI	CCGCTC	1 cut(s)	192
AccI	GTMKAC	1 cut(s)	90
AciI	CCGC	1 cut(s)	190
AcyI	GRCGYC	1 cut(s)	209
AfaI	GTAC	1 cut(s)	226
AgsI	TTSAA	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	202
AluBI	AGCT	1 cut(s)	38
AluI	AGCT	1 cut(s)	38
Alw21I	GWGCWC	2 cut(s)	40, 163
Alw26I	GTCTC	2 cut(s)	9, 204
Alw44I	GTGCAC	1 cut(s)	159
Ama87I	CYCGRG	2 cut(s)	39, 232
ApaLI	GTGCAC	1 cut(s)	159
AspA2I	CCTAGG	1 cut(s)	287
AsuC2I	CCSGG	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	23
AvaI	CYCGRG	2 cut(s)	39, 232
AvrII	CCTAGG	1 cut(s)	287
BaeGI	GKGCMC	1 cut(s)	163
BanII	GRGCYC	2 cut(s)	27, 40
BbsI	GAAGAC	1 cut(s)	247
Bbv12I	GWGCWC	2 cut(s)	40, 163
BccI	CCATC	1 cut(s)	11
BceAI	ACGGC	1 cut(s)	127
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BciT130I	CCWGG	1 cut(s)	204
BcnI	CCSGG	1 cut(s)	272
BcoDI	GTCTC	2 cut(s)	9, 204
BfaI	CTAG	1 cut(s)	288
BisI	GCNGC	1 cut(s)	190
BlnI	CCTAGG	1 cut(s)	287
BlsI	GCNGC	1 cut(s)	191
Bme1390I	CCNGG	2 cut(s)	204, 272
BmeT110I	CYCGRG	2 cut(s)	39, 232
BmrFI	CCNGG	2 cut(s)	204, 272
BmsI	GCATC	1 cut(s)	138
BpiI	GAAGAC	1 cut(s)	247
BpmI	CTGGAG	2 cut(s)	169, 186
BpuMI	CCSGG	1 cut(s)	272
BsaHI	GRCGYC	1 cut(s)	209
BsaJI	CCNNGG	2 cut(s)	203, 287
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	2 cut(s)	203, 287
BseRI	GAGGAG	1 cut(s)	57
BseSI	GKGCMC	1 cut(s)	163
Bsh1285I	CGRYCG	1 cut(s)	252
BsiEI	CGRYCG	1 cut(s)	252
BsiHKAI	GWGCWC	2 cut(s)	40, 163
BsiHKCI	CYCGRG	2 cut(s)	39, 232
BsiSI	CCGG	1 cut(s)	271
BslFI	GGGAC	1 cut(s)	220
BsmAI	GTCTC	2 cut(s)	9, 204
BsmFI	GGGAC	1 cut(s)	220
BsoBI	CYCGRG	2 cut(s)	39, 232
Bsp1286I	GDGCHC	3 cut(s)	27, 40, 163
Bsp1407I	TGTACA	1 cut(s)	224
BspACI	CCGC	1 cut(s)	190
BsrBI	CCGCTC	1 cut(s)	192
BsrGI	TGTACA	1 cut(s)	224
BssECI	CCNNGG	2 cut(s)	203, 287
BssNI	GRCGYC	1 cut(s)	209
BssT1I	CCWWGG	1 cut(s)	287
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	2 cut(s)	222, 253
Bst6I	CTCTTC	1 cut(s)	175
BstACI	GRCGYC	1 cut(s)	209
BstAUI	TGTACA	1 cut(s)	224
BstEII	GGTNACC	1 cut(s)	29
BstMAI	GTCTC	2 cut(s)	9, 204
BstMCI	CGRYCG	1 cut(s)	252
BstNI	CCWGG	1 cut(s)	204
BstPI	GGTNACC	1 cut(s)	29
BstSCI	CCNGG	2 cut(s)	202, 270
BstSLI	GKGCMC	1 cut(s)	163
BstV2I	GAAGAC	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	225
CviJI	RGCY	4 cut(s)	25, 38, 85, 189
CviKI_1	RGCY	4 cut(s)	25, 38, 85, 189
CviQI	GTAC	1 cut(s)	225
Eam1104I	CTCTTC	1 cut(s)	175
EarI	CTCTTC	1 cut(s)	175
Ecl136II	GAGCTC	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	287
Eco24I	GRGCYC	2 cut(s)	27, 40
Eco53kI	GAGCTC	1 cut(s)	38
Eco88I	CYCGRG	2 cut(s)	39, 232
Eco91I	GGTNACC	1 cut(s)	29
EcoICRI	GAGCTC	1 cut(s)	38
EcoO65I	GGTNACC	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	287
EcoT38I	GRGCYC	2 cut(s)	27, 40
ErhI	CCWWGG	1 cut(s)	287
FaiI	YATR	1 cut(s)	9
FaqI	GGGAC	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	1 cut(s)	190
FriOI	GRGCYC	2 cut(s)	27, 40
Fsp4HI	GCNGC	1 cut(s)	190
FspBI	CTAG	1 cut(s)	288
GluI	GCNGC	1 cut(s)	190
GsuI	CTGGAG	2 cut(s)	169, 186
HapII	CCGG	1 cut(s)	271
Hin1I	GRCGYC	1 cut(s)	209
HinfI	GANTC	2 cut(s)	51, 68
HpaII	CCGG	1 cut(s)	271
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	4 cut(s)	91, 161, 225, 294
Hpy188III	TCNNGA	1 cut(s)	141
Hpy8I	GTNNAC	4 cut(s)	91, 161, 225, 294
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	2 cut(s)	222, 253
HpyCH4IV	ACGT	1 cut(s)	209
HpyCH4V	TGCA	1 cut(s)	161
HpySE526I	ACGT	1 cut(s)	209
Hsp92I	GRCGYC	1 cut(s)	209
LpnPI	CCDG	4 cut(s)	189, 199, 216, 284
LweI	GCATC	1 cut(s)	138
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	1 cut(s)	209
MaeIII	GTNAC	1 cut(s)	29
MbiI	CCGCTC	1 cut(s)	192
MboII	GAAGA	4 cut(s)	126, 129, 162, 252
MhlI	GDGCHC	3 cut(s)	27, 40, 163
MluCI	AATT	1 cut(s)	153
MnlI	CCTC	8 cut(s)	35, 38, 74, 116, 178, 228, 241, 273
MslI	CAYNNNNRTG	1 cut(s)	12
MspI	CCGG	1 cut(s)	271
MspR9I	CCNGG	2 cut(s)	204, 272
MvaI	CCWGG	1 cut(s)	204
NciI	CCSGG	1 cut(s)	272
NmuCI	GTSAC	1 cut(s)	29
PaeR7I	CTCGAG	2 cut(s)	39, 232
PcsI	WCGNNNNNNNCGW	1 cut(s)	46
PfeI	GAWTC	2 cut(s)	51, 68
PfoI	TCCNGGA	1 cut(s)	270
PkrI	GCNGC	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	40
Psp6I	CCWGG	1 cut(s)	202
PspEI	GGTNACC	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	202
PspXI	VCTCGAGB	2 cut(s)	39, 232
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
RseI	CAYNNNNRTG	1 cut(s)	12
SacI	GAGCTC	1 cut(s)	40
SatI	GCNGC	1 cut(s)	190
ScrFI	CCNGG	2 cut(s)	204, 272
SduI	GDGCHC	3 cut(s)	27, 40, 163
SetI	ASST	6 cut(s)	40, 98, 212, 233, 265, 293
SfaNI	GCATC	1 cut(s)	138
Sfr274I	CTCGAG	2 cut(s)	39, 232
SlaI	CTCGAG	2 cut(s)	39, 232
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	2 cut(s)	39, 232
SmoI	CTYRAG	2 cut(s)	39, 232
Sse9I	AATT	1 cut(s)	153
SsiI	CCGC	1 cut(s)	190
SspMI	CTAG	1 cut(s)	288
SstI	GAGCTC	1 cut(s)	40
StyD4I	CCNGG	2 cut(s)	202, 270
StyI	CCWWGG	1 cut(s)	287
TaaI	ACNGT	2 cut(s)	222, 253
TaiI	ACGT	1 cut(s)	212
TaqI	TCGA	6 cut(s)	40, 66, 140, 217, 233, 256
TaqII	GACCGA	1 cut(s)	17
TasI	AATT	1 cut(s)	153
TatI	WGTACW	1 cut(s)	224
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	2 cut(s)	51, 68
TscAI	CASTG	1 cut(s)	227
TseFI	GTSAC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	29
TspRI	CASTG	1 cut(s)	227
VneI	GTGCAC	1 cut(s)	159
XhoI	CTCGAG	2 cut(s)	39, 232
XmaJI	CCTAGG	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	1 cut(s)	288
ZraI	GACGTC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.