Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

9293379 .. 9293742

Gene Structure 364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGTTTCTATCTTCTAGCGCAAGGCTTGAACTTTACAGCTATGGCTTTTCAGCGGCTGGTGGAAATGGGGAAGGGGAGGCAACTGGGAAGCAAGGTCTGGAGGATAATCGTGATGGTTTGAAGGTCCTGCCTTTTGAGTTTGTTGCATTGGAGGCATGCCTTGAGGCTGCTTGCAGTGTCTTAGAGAATGAAGCACGGACATTGGAACAAGAAGCTCATCCAGCTTTAGATAAGCTCACTTCAAAGATTAGTACTCTCAATTTAGAACGCGTCCGCCAAATCAAGAGTCGCTTGGTTGCAATTACCGGCCGTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

106

Amino Acids

11.36

Weight (kDa)

5.17

Isoelectric Point (pI)

29.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRS2-like	PF22099	41 - 101	8.8e-06	Magnesium transporter MRS2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	270
AciI	CCGC	2 cut(s)	53, 274
AcoI	YGGCCR	1 cut(s)	307
AfaI	GTAC	1 cut(s)	253
AflIII	ACRYGT	1 cut(s)	268
AgsI	TTSAA	3 cut(s)	29, 121, 243
AluBI	AGCT	4 cut(s)	39, 215, 224, 235
AluI	AGCT	4 cut(s)	39, 215, 224, 235
AlwNI	CAGNNNCTG	1 cut(s)	56
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	1 cut(s)	167
ArsI	GACNNNNNNTTYG	2 cut(s)	271, 303
AspLEI	GCGC	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	124
AvaII	GGWCC	1 cut(s)	124
BbvI	GCAGC	1 cut(s)	154
BccI	CCATC	1 cut(s)	107
BceAI	ACGGC	1 cut(s)	294
BfaI	CTAG	1 cut(s)	15
BisI	GCNGC	2 cut(s)	54, 168
BlsI	GCNGC	2 cut(s)	55, 169
BmcAI	AGTACT	1 cut(s)	253
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	124
BmrI	ACTGGG	1 cut(s)	93
BmuI	ACTGGG	1 cut(s)	93
BpmI	CTGGAG	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	182
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	88
BseGI	GGATG	1 cut(s)	217
BseNI	ACTGG	1 cut(s)	88
BseX3I	CGGCCG	1 cut(s)	307
BseXI	GCAGC	1 cut(s)	154
Bsh1236I	CGCG	1 cut(s)	270
Bsh1285I	CGRYCG	1 cut(s)	310
BshFI	GGCC	1 cut(s)	309
BsiEI	CGRYCG	1 cut(s)	310
BsiSI	CCGG	1 cut(s)	306
BsnI	GGCC	1 cut(s)	309
BspACI	CCGC	2 cut(s)	53, 274
BspANI	GGCC	1 cut(s)	309
BspFNI	CGCG	1 cut(s)	270
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	88
BssAI	RCCGGY	1 cut(s)	305
BstC8I	GCNNGC	2 cut(s)	157, 172
BstDEI	CTNAG	1 cut(s)	181
BstF5I	GGATG	1 cut(s)	217
BstFNI	CGCG	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	20
BstMCI	CGRYCG	1 cut(s)	310
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 221
BstNSI	RCATGY	1 cut(s)	159
BstUI	CGCG	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	154
BstZI	CGGCCG	1 cut(s)	307
BsuRI	GGCC	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	217
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	1 cut(s)	181
Cac8I	GCNNGC	2 cut(s)	157, 172
CaiI	CAGNNNCTG	1 cut(s)	56
CfoI	GCGC	1 cut(s)	20
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	1 cut(s)	124
CseI	GACGC	1 cut(s)	259
Csp6I	GTAC	1 cut(s)	252
CviAII	CATG	1 cut(s)	156
CviJI	RGCY	9 cut(s)	25, 39, 45, 56, 167, 215, 224, 235, 309
CviKI_1	RGCY	9 cut(s)	25, 39, 45, 56, 167, 215, 224, 235, 309
CviQI	GTAC	1 cut(s)	252
DdeI	CTNAG	1 cut(s)	181
EaeI	YGGCCR	1 cut(s)	307
EagI	CGGCCG	1 cut(s)	307
EciI	GGCGGA	1 cut(s)	263
EclXI	CGGCCG	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	124
Eco52I	CGGCCG	1 cut(s)	307
EcoO109I	RGGNCCY	1 cut(s)	124
FaeI	CATG	1 cut(s)	159
FaiI	YATR	2 cut(s)	42, 157
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FatI	CATG	1 cut(s)	155
Fnu4HI	GCNGC	2 cut(s)	54, 168
FokI	GGATG	1 cut(s)	204
Fsp4HI	GCNGC	2 cut(s)	54, 168
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	1 cut(s)	19
GluI	GCNGC	2 cut(s)	54, 168
GsuI	CTGGAG	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	309
HapII	CCGG	1 cut(s)	306
HgaI	GACGC	1 cut(s)	259
HhaI	GCGC	1 cut(s)	20
Hin1II	CATG	1 cut(s)	159
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HinfI	GANTC	1 cut(s)	286
HpaII	CCGG	1 cut(s)	306
Hpy188III	TCNNGA	3 cut(s)	98, 110, 283
HpyAV	CCTTC	2 cut(s)	65, 115
HpyCH4V	TGCA	3 cut(s)	146, 174, 299
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 221
HpyF3I	CTNAG	1 cut(s)	181
Hsp92II	CATG	1 cut(s)	159
HspAI	GCGC	1 cut(s)	18
LpnPI	CCDG	5 cut(s)	42, 69, 83, 140, 234
Lsp1109I	GCAGC	1 cut(s)	154
MaeI	CTAG	1 cut(s)	15
MboII	GAAGA	1 cut(s)	3
MluCI	AATT	2 cut(s)	259, 300
MluI	ACGCGT	1 cut(s)	268
MlyI	GAGTC	1 cut(s)	295
MnlI	CCTC	4 cut(s)	70, 94, 145, 157
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	1 cut(s)	306
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	2 cut(s)	152, 221
NlaIII	CATG	1 cut(s)	159
NspI	RCATGY	1 cut(s)	159
PaeI	GCATGC	1 cut(s)	159
PkrI	GCNGC	2 cut(s)	55, 169
PleI	GAGTC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	294
PpuMI	RGGWCCY	1 cut(s)	124
Psp5II	RGGWCCY	1 cut(s)	124
PspPI	GGNCC	1 cut(s)	124
PspPPI	RGGWCCY	1 cut(s)	124
PstNI	CAGNNNCTG	1 cut(s)	56
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
SatI	GCNGC	2 cut(s)	54, 168
Sau96I	GGNCC	1 cut(s)	124
ScaI	AGTACT	1 cut(s)	253
SchI	GAGTC	1 cut(s)	295
SetI	ASST	6 cut(s)	41, 97, 126, 217, 226, 237
SinI	GGWCC	1 cut(s)	124
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
SphI	GCATGC	1 cut(s)	159
Sse9I	AATT	2 cut(s)	259, 300
SsiI	CCGC	2 cut(s)	53, 274
SspMI	CTAG	1 cut(s)	15
TasI	AATT	2 cut(s)	259, 300
TatI	WGTACW	1 cut(s)	251
TauI	GCSGC	1 cut(s)	56
TscAI	CASTG	1 cut(s)	181
TseI	GCWGC	1 cut(s)	167
TspDTI	ATGAA	1 cut(s)	204
TspGWI	ACGGA	1 cut(s)	211
TspRI	CASTG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	124
XceI	RCATGY	1 cut(s)	159
XspI	CTAG	1 cut(s)	15
ZrmI	AGTACT	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.