Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

10316775 .. 10317778

Gene Structure 1004 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGCCCGGCCTGAGCATGTCGGTGGCCGGCGGTCTACGGAAGAAGGGGGCTTGGCGTGCGTCCATGGTTGCTTCTGGACTCGAATGGGCAAGCCCAGGTGGTAGAGGTCGGCAAGCACGCCATCATGCGGCGTACAGGTCTACCCGCTCGGGACCTTCGGATCCTGGACCCGCTTCTTTCATACCCGTCTACGGTTCTGGGTCGAGAGCGAGCTATCGTGATCAACTTGGAGCATATCAAGGCCATCATCACCGCCCAGGAGGTCCTGCTGCTCAATTCCCGAGACCCTTCTGTGCCTTTGTAACGTGGCGGAAGACATCGCTCTCTGGAACCCGTCGACGAAGAAGTACAGAATCTTGCCGTCTCTGCCCTCGGATCGAAAGCGCGATTCGAACATGTGCTTATGTGGCGCGAGGGGTTTATAGCCCGAGAAGCAACGAGTGGAAGCGACTCGAAGACATGCCTTATGTACTCTGTTACACACGAGAAATGGGAATTCCTGTGGGGAAGTTGGCATTGTACATGGCACTTGGAGAAGTTCGCCCCTCAGCGTGTTTGCCTGTAACAATTGATGTTGGGACAAATAATGAGAAGATGCTGGATAATGAGTTTTACATTGGACTCAGACAAAAGAGGACAAGGGGAAAGGAGTACGAGGATCTTTTAGAAGAGTTCATGAGTACTGTCAAGCAGAACTATGGCGAAAAAGTTCTTGTACAGTTCGAAGATTTTGCAAACCACAATGCTTTCGAGCTGCTGGCCAAATATAGACCATTTCATCTCGTCTTCAATGATGACATACAGGGGACGGCATCTGTAGTTCTTGCAGGAGTTGTGGCAGCACTAAAGTTAATCGGTGGTTCCCTGTCTGAGCATAGGTTTTTGTTCCTTGGCGCTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004470 GO:0004473 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006090 GO:0006108 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0019752 GO:0022607 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043933 GO:0044085 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0051259 GO:0051260 GO:0055114 GO:0065003 GO:0071704 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00620 ko00710 ko01100 ko01120 ko01200 map00620 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

Malic_M malic

Protein Analysis

301

Amino Acids

33.24

Weight (kDa)

9.73

Isoelectric Point (pI)

49.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
malic	PF00390	164 - 257	2.1e-35	Malic enzyme, N-terminal domain
Malic_M	PF03949	267 - 300	1.3e-06	Malic enzyme, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	147
AccI	GTMKAC	4 cut(s)	34, 140, 189, 337
AccII	CGCG	2 cut(s)	386, 412
AciI	CCGC	6 cut(s)	30, 128, 145, 171, 253, 310
AclWI	GGATC	4 cut(s)	155, 168, 383, 666
AcoI	YGGCCR	2 cut(s)	24, 759
AcsI	RAATTY	1 cut(s)	495
AfaI	GTAC	7 cut(s)	134, 349, 471, 521, 653, 682, 717
AfiI	CCNNNNNNNGG	2 cut(s)	127, 191
AflIII	ACRYGT	1 cut(s)	395
AgsI	TTSAA	1 cut(s)	790
AjnI	CCWGG	3 cut(s)	94, 163, 256
AluBI	AGCT	2 cut(s)	213, 754
AluI	AGCT	2 cut(s)	213, 754
Alw26I	GTCTC	2 cut(s)	277, 368
AlwI	GGATC	4 cut(s)	155, 168, 383, 666
Ama87I	CYCGRG	3 cut(s)	148, 280, 427
AoxI	GGCC	4 cut(s)	7, 24, 241, 759
ApeKI	GCWGC	3 cut(s)	269, 754, 839
ApoI	RAATTY	1 cut(s)	495
Asp700I	GAANNNNTTC	1 cut(s)	708
AspLEI	GCGC	3 cut(s)	386, 412, 896
AspS9I	GGNCC	3 cut(s)	152, 167, 263
AsuC2I	CCSGG	1 cut(s)	6
AsuHPI	GGTGA	1 cut(s)	242
AsuII	TTCGAA	2 cut(s)	391, 723
AvaI	CYCGRG	3 cut(s)	148, 280, 427
AvaII	GGWCC	3 cut(s)	152, 167, 263
BalI	TGGCCA	1 cut(s)	761
BamHI	GGATCC	1 cut(s)	160
BauI	CACGAG	1 cut(s)	483
BbsI	GAAGAC	3 cut(s)	320, 462, 778
BbvCI	CCTCAGC	1 cut(s)	547
BbvI	GCAGC	3 cut(s)	256, 741, 851
BccI	CCATC	2 cut(s)	129, 252
BceAI	ACGGC	2 cut(s)	345, 825
BcgI	CGANNNNNNTGC	2 cut(s)	713, 747
BciT130I	CCWGG	3 cut(s)	96, 165, 258
BclI	TGATCA	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	6
BcoDI	GTCTC	2 cut(s)	277, 368
BfmI	CTRYAG	1 cut(s)	816
BfoI	RGCGCY	1 cut(s)	897
BisI	GCNGC	4 cut(s)	129, 270, 755, 840
BlsI	GCNGC	4 cut(s)	130, 271, 756, 841
BmcAI	AGTACT	1 cut(s)	682
Bme1390I	CCNGG	4 cut(s)	6, 96, 165, 258
Bme18I	GGWCC	3 cut(s)	152, 167, 263
BmeT110I	CYCGRG	3 cut(s)	148, 280, 427
BmgT120I	GGNCC	3 cut(s)	152, 167, 263
BmiI	GGNNCC	5 cut(s)	153, 162, 169, 331, 862
BmrFI	CCNGG	4 cut(s)	6, 96, 165, 258
BmsI	GCATC	2 cut(s)	585, 821
BpiI	GAAGAC	3 cut(s)	320, 462, 778
Bpu10I	CCTNAGC	2 cut(s)	11, 547
Bpu14I	TTCGAA	2 cut(s)	391, 723
BpuMI	CCSGG	1 cut(s)	6
BsaI	GGTCTC	1 cut(s)	277
BsaJI	CCNNGG	5 cut(s)	63, 94, 256, 371, 889
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 191
Bse118I	RCCGGY	1 cut(s)	26
BseBI	CCWGG	3 cut(s)	96, 165, 258
BseDI	CCNNGG	5 cut(s)	63, 94, 256, 371, 889
BseLI	CCNNNNNNNGG	2 cut(s)	127, 191
BseMII	CTCAG	3 cut(s)	561, 637, 861
BseXI	GCAGC	3 cut(s)	256, 741, 851
Bsh1236I	CGCG	2 cut(s)	386, 412
BshFI	GGCC	4 cut(s)	9, 26, 243, 761
BsiHKCI	CYCGRG	3 cut(s)	148, 280, 427
BsiSI	CCGG	2 cut(s)	6, 27
BslFI	GGGAC	3 cut(s)	165, 592, 820
BslI	CCNNNNNNNGG	2 cut(s)	127, 191
BsmAI	GTCTC	2 cut(s)	277, 368
BsmBI	CGTCTC	1 cut(s)	368
BsmFI	GGGAC	3 cut(s)	165, 592, 820
BsnI	GGCC	4 cut(s)	9, 26, 243, 761
Bso31I	GGTCTC	1 cut(s)	277
BsoBI	CYCGRG	3 cut(s)	148, 280, 427
Bsp119I	TTCGAA	2 cut(s)	391, 723
Bsp1407I	TGTACA	2 cut(s)	519, 715
Bsp143I	GATC	4 cut(s)	160, 220, 375, 658
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	6 cut(s)	30, 128, 145, 171, 253, 310
BspANI	GGCC	4 cut(s)	9, 26, 243, 761
BspCNI	CTCAG	3 cut(s)	560, 636, 862
BspFNI	CGCG	2 cut(s)	386, 412
BspHI	TCATGA	1 cut(s)	675
BspLI	GGNNCC	5 cut(s)	153, 162, 169, 331, 862
BspPI	GGATC	4 cut(s)	155, 168, 383, 666
BspT104I	TTCGAA	2 cut(s)	391, 723
BspTNI	GGTCTC	1 cut(s)	277
BsrBI	CCGCTC	1 cut(s)	147
BsrFI	RCCGGY	1 cut(s)	26
BsrGI	TGTACA	2 cut(s)	519, 715
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	5 cut(s)	63, 94, 256, 371, 889
BssMI	GATC	4 cut(s)	160, 220, 375, 658
BssSI	CACGAG	1 cut(s)	483
BssT1I	CCWWGG	2 cut(s)	63, 889
Bst2BI	CACGAG	1 cut(s)	483
Bst2UI	CCWGG	3 cut(s)	96, 165, 258
Bst4CI	ACNGT	3 cut(s)	194, 685, 720
Bst6I	CTCTTC	1 cut(s)	663
BstAUI	TGTACA	2 cut(s)	519, 715
BstBI	TTCGAA	2 cut(s)	391, 723
BstC8I	GCNNGC	7 cut(s)	28, 57, 91, 114, 118, 211, 759
BstDEI	CTNAG	4 cut(s)	11, 547, 623, 870
BstDSI	CCRYGG	1 cut(s)	63
BstFNI	CGCG	2 cut(s)	386, 412
BstH2I	RGCGCY	1 cut(s)	897
BstHHI	GCGC	3 cut(s)	386, 412, 896
BstKTI	GATC	4 cut(s)	163, 223, 378, 661
BstMAI	GTCTC	2 cut(s)	277, 368
BstMBI	GATC	4 cut(s)	160, 220, 375, 658
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 366, 407, 432
BstNI	CCWGG	3 cut(s)	96, 165, 258
BstNSI	RCATGY	3 cut(s)	19, 399, 463
BstSCI	CCNGG	4 cut(s)	4, 94, 163, 256
BstSFI	CTRYAG	1 cut(s)	816
BstUI	CGCG	2 cut(s)	386, 412
BstV1I	GCAGC	3 cut(s)	256, 741, 851
BstV2I	GAAGAC	3 cut(s)	320, 462, 778
BstX2I	RGATCY	2 cut(s)	160, 658
BstYI	RGATCY	2 cut(s)	160, 658
BsuRI	GGCC	4 cut(s)	9, 26, 243, 761
BtgI	CCRYGG	1 cut(s)	63
BtgZI	GCGATG	1 cut(s)	303
Cac8I	GCNNGC	7 cut(s)	28, 57, 91, 114, 118, 211, 759
CciI	TCATGA	1 cut(s)	675
CfoI	GCGC	3 cut(s)	386, 412, 896
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	3 cut(s)	152, 167, 263
CseI	GACGC	1 cut(s)	48
Csp6I	GTAC	7 cut(s)	133, 348, 470, 520, 652, 681, 716
CviAII	CATG	7 cut(s)	16, 64, 125, 396, 460, 523, 676
CviJI	RGCY	9 cut(s)	9, 26, 50, 93, 213, 243, 426, 754, 761
CviKI_1	RGCY	9 cut(s)	9, 26, 50, 93, 213, 243, 426, 754, 761
CviQI	GTAC	7 cut(s)	133, 348, 470, 520, 652, 681, 716
DdeI	CTNAG	4 cut(s)	11, 547, 623, 870
DpnI	GATC	4 cut(s)	162, 222, 377, 660
DpnII	GATC	4 cut(s)	160, 220, 375, 658
EaeI	YGGCCR	2 cut(s)	24, 759
Eam1104I	CTCTTC	1 cut(s)	663
EarI	CTCTTC	1 cut(s)	663
EciI	GGCGGA	1 cut(s)	325
Eco130I	CCWWGG	2 cut(s)	63, 889
Eco31I	GGTCTC	1 cut(s)	277
Eco47I	GGWCC	3 cut(s)	152, 167, 263
Eco88I	CYCGRG	3 cut(s)	148, 280, 427
EcoO109I	RGGNCCY	2 cut(s)	152, 263
EcoRI	GAATTC	1 cut(s)	495
EcoRII	CCWGG	3 cut(s)	94, 163, 256
EcoT14I	CCWWGG	2 cut(s)	63, 889
ErhI	CCWWGG	2 cut(s)	63, 889
Esp3I	CGTCTC	1 cut(s)	368
FaeI	CATG	7 cut(s)	19, 67, 128, 399, 463, 526, 679
FaqI	GGGAC	3 cut(s)	165, 592, 820
FatI	CATG	7 cut(s)	15, 63, 124, 395, 459, 522, 675
FauI	CCCGC	2 cut(s)	152, 178
FbaI	TGATCA	1 cut(s)	220
FblI	GTMKAC	4 cut(s)	34, 140, 189, 337
Fnu4HI	GCNGC	4 cut(s)	129, 270, 755, 840
Fsp4HI	GCNGC	4 cut(s)	129, 270, 755, 840
GlaI	GCGC	3 cut(s)	385, 411, 895
GluI	GCNGC	4 cut(s)	129, 270, 755, 840
HaeII	RGCGCY	1 cut(s)	897
HaeIII	GGCC	4 cut(s)	9, 26, 243, 761
HapII	CCGG	2 cut(s)	6, 27
HgaI	GACGC	1 cut(s)	48
HhaI	GCGC	3 cut(s)	386, 412, 896
Hin1II	CATG	7 cut(s)	19, 67, 128, 399, 463, 526, 679
Hin6I	GCGC	3 cut(s)	384, 410, 894
HinP1I	GCGC	3 cut(s)	384, 410, 894
HincII	GTYRAC	1 cut(s)	338
HindII	GTYRAC	1 cut(s)	338
HinfI	GANTC	5 cut(s)	78, 353, 388, 450, 621
HpaII	CCGG	2 cut(s)	6, 27
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	4 cut(s)	35, 141, 190, 338
Hpy188I	TCNGA	4 cut(s)	160, 375, 626, 871
Hpy188III	TCNNGA	7 cut(s)	75, 150, 204, 218, 280, 327, 676
Hpy8I	GTNNAC	4 cut(s)	35, 141, 190, 338
Hpy99I	CGWCG	2 cut(s)	339, 342
HpyAV	CCTTC	3 cut(s)	37, 165, 298
HpyCH4III	ACNGT	3 cut(s)	194, 685, 720
HpyCH4IV	ACGT	1 cut(s)	305
HpyCH4V	TGCA	2 cut(s)	734, 827
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 366, 407, 432
HpyF3I	CTNAG	4 cut(s)	11, 547, 623, 870
HpySE526I	ACGT	1 cut(s)	305
Hsp92II	CATG	7 cut(s)	19, 67, 128, 399, 463, 526, 679
HspAI	GCGC	3 cut(s)	384, 410, 894
KroI	GCCGGC	1 cut(s)	26
KroNI	GCCGGC	1 cut(s)	28
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	4 cut(s)	160, 220, 375, 658
LmnI	GCTCC	1 cut(s)	230
Lsp1109I	GCAGC	3 cut(s)	256, 741, 851
LweI	GCATC	2 cut(s)	585, 821
MaeII	ACGT	1 cut(s)	305
MaeIII	GTNAC	3 cut(s)	301, 476, 562
MalI	GATC	4 cut(s)	162, 222, 377, 660
MbiI	CCGCTC	1 cut(s)	147
MboI	GATC	4 cut(s)	160, 220, 375, 658
MboII	GAAGA	8 cut(s)	52, 325, 354, 467, 604, 680, 737, 778
MfeI	CAATTG	1 cut(s)	567
MflI	RGATCY	2 cut(s)	160, 658
MlsI	TGGCCA	1 cut(s)	761
MluCI	AATT	3 cut(s)	275, 495, 567
MluNI	TGGCCA	1 cut(s)	761
MlyI	GAGTC	3 cut(s)	72, 444, 615
MnlI	CCTC	7 cut(s)	98, 254, 381, 407, 556, 627, 649
Mox20I	TGGCCA	1 cut(s)	761
MroNI	GCCGGC	1 cut(s)	26
MroXI	GAANNNNTTC	1 cut(s)	708
MscI	TGGCCA	1 cut(s)	761
MseI	TTAA	1 cut(s)	851
MslI	CAYNNNNRTG	1 cut(s)	20
Msp20I	TGGCCA	1 cut(s)	761
MspI	CCGG	2 cut(s)	6, 27
MspR9I	CCNGG	4 cut(s)	6, 96, 165, 258
MunI	CAATTG	1 cut(s)	567
MvaI	CCWGG	3 cut(s)	96, 165, 258
MvnI	CGCG	2 cut(s)	386, 412
MwoI	GCNNNNNNNGC	4 cut(s)	56, 366, 407, 432
NaeI	GCCGGC	1 cut(s)	28
NciI	CCSGG	1 cut(s)	6
NcoI	CCATGG	1 cut(s)	63
NdeII	GATC	4 cut(s)	160, 220, 375, 658
NgoMIV	GCCGGC	1 cut(s)	26
NlaIII	CATG	7 cut(s)	19, 67, 128, 399, 463, 526, 679
NlaIV	GGNNCC	5 cut(s)	153, 162, 169, 331, 862
NspI	RCATGY	3 cut(s)	19, 399, 463
NspV	TTCGAA	2 cut(s)	391, 723
PagI	TCATGA	1 cut(s)	675
PciI	ACATGT	1 cut(s)	395
PdiI	GCCGGC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	708
PfeI	GAWTC	2 cut(s)	353, 388
PfoI	TCCNGGA	1 cut(s)	163
PkrI	GCNGC	4 cut(s)	130, 271, 756, 841
PleI	GAGTC	3 cut(s)	72, 444, 615
PpsI	GAGTC	3 cut(s)	72, 444, 615
PpuMI	RGGWCCY	2 cut(s)	152, 263
PscI	ACATGT	1 cut(s)	395
Psp5II	RGGWCCY	2 cut(s)	152, 263
Psp6I	CCWGG	3 cut(s)	94, 163, 256
PspGI	CCWGG	3 cut(s)	94, 163, 256
PspN4I	GGNNCC	5 cut(s)	153, 162, 169, 331, 862
PspPI	GGNCC	3 cut(s)	152, 167, 263
PspPPI	RGGWCCY	2 cut(s)	152, 263
PsuI	RGATCY	2 cut(s)	160, 658
RsaI	GTAC	7 cut(s)	134, 349, 471, 521, 653, 682, 717
RsaNI	GTAC	7 cut(s)	133, 348, 470, 520, 652, 681, 716
RseI	CAYNNNNRTG	1 cut(s)	20
SalI	GTCGAC	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	851
SatI	GCNGC	4 cut(s)	129, 270, 755, 840
Sau3AI	GATC	4 cut(s)	160, 220, 375, 658
Sau96I	GGNCC	3 cut(s)	152, 167, 263
ScaI	AGTACT	1 cut(s)	682
SchI	GAGTC	3 cut(s)	72, 444, 615
ScrFI	CCNGG	4 cut(s)	6, 96, 165, 258
SetI	ASST	9 cut(s)	100, 109, 140, 157, 215, 265, 308, 756, 881
SfaNI	GCATC	2 cut(s)	585, 821
SfcI	CTRYAG	1 cut(s)	816
SfuI	TTCGAA	2 cut(s)	391, 723
SgrDI	CGTCGACG	1 cut(s)	336
SinI	GGWCC	3 cut(s)	152, 167, 263
SmiMI	CAYNNNNRTG	1 cut(s)	20
Sse9I	AATT	3 cut(s)	275, 495, 567
SsiI	CCGC	6 cut(s)	30, 128, 145, 171, 253, 310
StyD4I	CCNGG	4 cut(s)	4, 94, 163, 256
StyI	CCWWGG	2 cut(s)	63, 889
TaaI	ACNGT	3 cut(s)	194, 685, 720
TaiI	ACGT	1 cut(s)	308
TaqI	TCGA	8 cut(s)	81, 203, 337, 378, 391, 453, 723, 750
TasI	AATT	3 cut(s)	275, 495, 567
TatI	WGTACW	5 cut(s)	347, 469, 519, 680, 715
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	2 cut(s)	353, 388
Tru1I	TTAA	1 cut(s)	851
Tru9I	TTAA	1 cut(s)	851
TseI	GCWGC	3 cut(s)	269, 754, 839
TspDTI	ATGAA	3 cut(s)	169, 664, 767
TspGWI	ACGGA	1 cut(s)	52
VpaK11BI	GGWCC	3 cut(s)	152, 167, 263
XapI	RAATTY	1 cut(s)	495
XceI	RCATGY	3 cut(s)	19, 399, 463
XmiI	GTMKAC	4 cut(s)	34, 140, 189, 337
XmnI	GAANNNNTTC	1 cut(s)	708
ZrmI	AGTACT	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.