Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

11109846 .. 11113032

Gene Structure 3187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGTCCGACTATATTGCAAAGACTCTGTTCTTCACATCCCTCCTGTATCACAATACCACAGACCACAAAAAAGCTGTTGCCGAATTTTGTGGCAATGTGGAGTTATGCAGGCTCACTGAGCAGGTTGTTTTTTCTGATCCATACAAAGTATCTCAATATAACCGATGGACTTCTCCTTATCTTGATTCGGATGCTGAGGCTGTGCGGGGGGATAATGCTTTGAAGCTTGAAGTTGCTGAGTTGAAATCCTTGTTCTGTGAGAGAGCACAAGCCCTAGTACATGGAGATCTTCACACTGGTTCTGTAATGGTGACTCATGATTCAACTCAAGTTATAGATCCAGAGTTTGCATTTTATGGACCAATGGGTTTTGATATCGGAGCTTTTCTGGGCAACTTAATTTTGGCTTTCTATGCACAAGATGGGCATGCTAATGACCAGAATGATCGAAAAGCATACAAGGCTTGGATTTTGAGGACAATTGAAAACACTTGGAACCTTTTTGACAGAAAATTCCTTGCACTATGGGATGCGAACAAAGATTCTGGCGATGCATATCTACCTGCAATTTATAACAACCCTGAGCTTGTACAGCTTGTACAAAAGAAATTTATTGAAGATCTGCTTCATGACACTCTTGGATTTGGTGCTGCAAAAATGATAAGGCGAATCGTTGGAGTTGCACATGTTGAAGATTTTGAGTCAATAGCGGATGCCAGCAAGCGTGCGGGTTGCGAGCGTCGAGCTCTTGAGTTAGCAAAGCTACTTCTCAAGGAGAGGAAAAGATTTCAGGACATTAATGAAGTTATTTCAGCAATTCTTCAACACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000302 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019509 GO:0019752 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0042802 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046522 GO:0050896 GO:0051716 GO:0070887 GO:0071241 GO:0071248 GO:0071265 GO:0071267 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071731 GO:0071732 GO:0097366 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

APH

Protein Analysis

278

Amino Acids

31.47

Weight (kDa)

5.61

Isoelectric Point (pI)

38.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APH	PF01636	34 - 132	2.1e-10	Phosphotransferase enzyme family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	573
Acc36I	ACCTGC	2 cut(s)	112, 571
AciI	CCGC	3 cut(s)	205, 710, 728
AclWI	GGATC	2 cut(s)	131, 332
AcsI	RAATTY	3 cut(s)	83, 512, 608
AfaI	GTAC	3 cut(s)	279, 591, 600
AflIII	ACRYGT	1 cut(s)	685
AgsI	TTSAA	8 cut(s)	223, 230, 244, 324, 485, 617, 692, 824
AluBI	AGCT	7 cut(s)	74, 226, 383, 586, 595, 746, 763
AluI	AGCT	7 cut(s)	74, 226, 383, 586, 595, 746, 763
Alw21I	GWGCWC	2 cut(s)	268, 748
AlwI	GGATC	2 cut(s)	131, 332
ApeKI	GCWGC	1 cut(s)	650
ApoI	RAATTY	3 cut(s)	83, 512, 608
AseI	ATTAAT	1 cut(s)	798
AspS9I	GGNCC	1 cut(s)	359
AsuHPI	GGTGA	1 cut(s)	322
AvaII	GGWCC	1 cut(s)	359
BanII	GRGCYC	1 cut(s)	748
Bbv12I	GWGCWC	2 cut(s)	268, 748
BbvCI	CCTCAGC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	637
BccI	CCATC	2 cut(s)	159, 416
BcgI	CGANNNNNNTGC	1 cut(s)	30
BfaI	CTAG	1 cut(s)	275
BfuAI	ACCTGC	2 cut(s)	112, 571
BglII	AGATCT	2 cut(s)	286, 619
BisI	GCNGC	1 cut(s)	651
BlsI	GCNGC	1 cut(s)	652
Bme18I	GGWCC	1 cut(s)	359
BmgT120I	GGNCC	1 cut(s)	359
BmiI	GGNNCC	1 cut(s)	497
BmsI	GCATC	4 cut(s)	181, 520, 541, 703
Bpu10I	CCTNAGC	2 cut(s)	195, 582
BpuEI	CTTGAG	3 cut(s)	312, 755, 770
BsaBI	GATNNNNATC	1 cut(s)	555
Bse1I	ACTGG	2 cut(s)	301, 829
Bse3DI	GCAATG	1 cut(s)	100
Bse8I	GATNNNNATC	1 cut(s)	555
BseGI	GGATG	4 cut(s)	35, 196, 535, 718
BseJI	GATNNNNATC	1 cut(s)	555
BseMI	GCAATG	1 cut(s)	100
BseMII	CTCAG	4 cut(s)	108, 186, 228, 573
BseNI	ACTGG	2 cut(s)	301, 829
BseXI	GCAGC	1 cut(s)	637
BsiHKAI	GWGCWC	2 cut(s)	268, 748
Bsp1286I	GDGCHC	2 cut(s)	268, 748
Bsp1407I	TGTACA	2 cut(s)	589, 598
Bsp143I	GATC	5 cut(s)	136, 286, 337, 445, 619
BspACI	CCGC	3 cut(s)	205, 710, 728
BspCNI	CTCAG	4 cut(s)	109, 187, 229, 574
BspHI	TCATGA	2 cut(s)	316, 628
BspLI	GGNNCC	1 cut(s)	497
BspMI	ACCTGC	2 cut(s)	112, 571
BspPI	GGATC	2 cut(s)	131, 332
BsrDI	GCAATG	1 cut(s)	100
BsrGI	TGTACA	2 cut(s)	589, 598
BsrI	ACTGG	2 cut(s)	301, 829
BssMI	GATC	5 cut(s)	136, 286, 337, 445, 619
BstAUI	TGTACA	2 cut(s)	589, 598
BstC8I	GCNNGC	6 cut(s)	110, 429, 718, 722, 726, 737
BstDEI	CTNAG	4 cut(s)	117, 195, 237, 582
BstF5I	GGATG	4 cut(s)	35, 196, 535, 718
BstKTI	GATC	5 cut(s)	139, 289, 340, 448, 622
BstMBI	GATC	5 cut(s)	136, 286, 337, 445, 619
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 413, 461, 592
BstNSI	RCATGY	2 cut(s)	431, 689
BstV1I	GCAGC	1 cut(s)	637
BstX2I	RGATCY	3 cut(s)	286, 337, 619
BstYI	RGATCY	3 cut(s)	286, 337, 619
BtgZI	GCGATG	1 cut(s)	564
BtsCI	GGATG	4 cut(s)	35, 196, 535, 718
BtsIMutI	CAGTG	2 cut(s)	114, 294
BveI	ACCTGC	2 cut(s)	112, 571
Cac8I	GCNNGC	6 cut(s)	110, 429, 718, 722, 726, 737
CciI	TCATGA	2 cut(s)	316, 628
Cfr13I	GGNCC	1 cut(s)	359
CseI	GACGC	1 cut(s)	728
Csp6I	GTAC	3 cut(s)	278, 590, 599
CviAII	CATG	5 cut(s)	281, 317, 428, 629, 686
CviQI	GTAC	3 cut(s)	278, 590, 599
DdeI	CTNAG	4 cut(s)	117, 195, 237, 582
DpnI	GATC	5 cut(s)	138, 288, 339, 447, 621
DpnII	GATC	5 cut(s)	136, 286, 337, 445, 619
Ecl136II	GAGCTC	1 cut(s)	746
Eco24I	GRGCYC	1 cut(s)	748
Eco32I	GATATC	1 cut(s)	376
Eco47I	GGWCC	1 cut(s)	359
Eco53kI	GAGCTC	1 cut(s)	746
EcoICRI	GAGCTC	1 cut(s)	746
EcoRV	GATATC	1 cut(s)	376
EcoT22I	ATGCAT	1 cut(s)	556
EcoT38I	GRGCYC	1 cut(s)	748
FaeI	CATG	5 cut(s)	284, 320, 431, 632, 689
FalI	AAGNNNNNCTT	2 cut(s)	609, 641
FatI	CATG	5 cut(s)	280, 316, 427, 628, 685
FauI	CCCGC	2 cut(s)	198, 721
Fnu4HI	GCNGC	1 cut(s)	651
FokI	GGATG	4 cut(s)	22, 203, 542, 725
FriOI	GRGCYC	1 cut(s)	748
Fsp4HI	GCNGC	1 cut(s)	651
FspBI	CTAG	1 cut(s)	275
GluI	GCNGC	1 cut(s)	651
HgaI	GACGC	1 cut(s)	728
Hin1II	CATG	5 cut(s)	284, 320, 431, 632, 689
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	7 cut(s)	22, 185, 313, 320, 542, 669, 701
HphI	GGTGA	1 cut(s)	322
Hpy188I	TCNGA	4 cut(s)	7, 136, 190, 380
Hpy188III	TCNNGA	6 cut(s)	182, 317, 341, 629, 749, 791
Hpy99I	CGWCG	1 cut(s)	744
HpyCH4V	TGCA	9 cut(s)	17, 108, 350, 416, 521, 554, 566, 653, 683
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 413, 461, 592
HpyF3I	CTNAG	4 cut(s)	117, 195, 237, 582
Hsp92II	CATG	5 cut(s)	284, 320, 431, 632, 689
Kzo9I	GATC	5 cut(s)	136, 286, 337, 445, 619
LmnI	GCTCC	1 cut(s)	380
Lsp1109I	GCAGC	1 cut(s)	637
LweI	GCATC	4 cut(s)	181, 520, 541, 703
MaeI	CTAG	1 cut(s)	275
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	5 cut(s)	138, 288, 339, 447, 621
MboI	GATC	5 cut(s)	136, 286, 337, 445, 619
MboII	GAAGA	5 cut(s)	22, 281, 629, 704, 812
MfeI	CAATTG	1 cut(s)	480
MflI	RGATCY	3 cut(s)	286, 337, 619
MhlI	GDGCHC	2 cut(s)	268, 748
MluCI	AATT	7 cut(s)	83, 399, 480, 512, 567, 608, 816
MlyI	GAGTC	3 cut(s)	16, 307, 710
MmeI	TCCRAC	2 cut(s)	30, 655
MnlI	CCTC	4 cut(s)	50, 190, 468, 771
Mph1103I	ATGCAT	1 cut(s)	556
MseI	TTAA	2 cut(s)	398, 798
MslI	CAYNNNNRTG	1 cut(s)	432
MunI	CAATTG	1 cut(s)	480
MwoI	GCNNNNNNNGC	4 cut(s)	118, 413, 461, 592
NdeII	GATC	5 cut(s)	136, 286, 337, 445, 619
NlaIII	CATG	5 cut(s)	284, 320, 431, 632, 689
NlaIV	GGNNCC	1 cut(s)	497
NmuCI	GTSAC	1 cut(s)	310
NsiI	ATGCAT	1 cut(s)	556
NspI	RCATGY	2 cut(s)	431, 689
PaeI	GCATGC	1 cut(s)	431
PagI	TCATGA	2 cut(s)	316, 628
PciI	ACATGT	1 cut(s)	685
PfeI	GAWTC	4 cut(s)	185, 320, 542, 669
PkrI	GCNGC	1 cut(s)	652
PleI	GAGTC	3 cut(s)	16, 307, 709
PpsI	GAGTC	3 cut(s)	16, 307, 709
PscI	ACATGT	1 cut(s)	685
PshBI	ATTAAT	1 cut(s)	798
PsiI	TTATAA	1 cut(s)	573
Psp124BI	GAGCTC	1 cut(s)	748
PspN4I	GGNNCC	1 cut(s)	497
PspPI	GGNCC	1 cut(s)	359
PsuI	RGATCY	3 cut(s)	286, 337, 619
RsaI	GTAC	3 cut(s)	279, 591, 600
RsaNI	GTAC	3 cut(s)	278, 590, 599
RseI	CAYNNNNRTG	1 cut(s)	432
SacI	GAGCTC	1 cut(s)	748
SaqAI	TTAA	2 cut(s)	398, 798
SatI	GCNGC	1 cut(s)	651
Sau3AI	GATC	5 cut(s)	136, 286, 337, 445, 619
Sau96I	GGNCC	1 cut(s)	359
SchI	GAGTC	3 cut(s)	16, 307, 710
SduI	GDGCHC	2 cut(s)	268, 748
SfaNI	GCATC	4 cut(s)	181, 520, 541, 703
SinI	GGWCC	1 cut(s)	359
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	3 cut(s)	327, 749, 770
SmoI	CTYRAG	3 cut(s)	327, 749, 770
SphI	GCATGC	1 cut(s)	431
Sse9I	AATT	7 cut(s)	83, 399, 480, 512, 567, 608, 816
SsiI	CCGC	3 cut(s)	205, 710, 728
SspMI	CTAG	1 cut(s)	275
SstI	GAGCTC	1 cut(s)	748
TaqI	TCGA	2 cut(s)	448, 742
TasI	AATT	7 cut(s)	83, 399, 480, 512, 567, 608, 816
TatI	WGTACW	3 cut(s)	277, 589, 598
TfiI	GAWTC	4 cut(s)	185, 320, 542, 669
Tru1I	TTAA	2 cut(s)	398, 798
Tru9I	TTAA	2 cut(s)	398, 798
TscAI	CASTG	2 cut(s)	121, 301
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	1 cut(s)	650
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	2 cut(s)	617, 816
TspRI	CASTG	2 cut(s)	121, 301
VpaK11BI	GGWCC	1 cut(s)	359
VspI	ATTAAT	1 cut(s)	798
XapI	RAATTY	3 cut(s)	83, 512, 608
XceI	RCATGY	2 cut(s)	431, 689
XspI	CTAG	1 cut(s)	275
Zsp2I	ATGCAT	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.