pycom10g08640

Thioredoxin-like 1-2, chloroplastic

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
N/A
Physical Location & Seq
Reverse (-)
11408721 .. 11408903
183 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 183 bp
ATGAGCAAGGCATTTGCATCACATAGTGGTTTCTACATTTCTTCTGGGTTGGATGAAATTGCAGTTGGCTTTAAATCCCCCAAAGGGGAAGTTAAGGTTTCTCCCTCCTTCAGTACCTCACAATTTAAAGATGCAAATTCAAGAGCTTTTCCTGCATTGAATGGTGATTTCTTGGGCCCATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

61

Amino Acids

6.32

Weight (kDa)

8.12

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 136
AcuI CTGAAG 1 cut(s) 94
AdeI CACNNNGTG 1 cut(s) 26
AfaI GTAC 1 cut(s) 115
AfiI CCNNNNNNNGG 2 cut(s) 84, 85
AgsI TTSAA 2 cut(s) 141, 160
AjuI GAANNNNNNNTTGG 2 cut(s) 48, 80
AluBI AGCT 1 cut(s) 146
AluI AGCT 1 cut(s) 146
AoxI GGCC 1 cut(s) 175
ApaI GGGCCC 1 cut(s) 179
ApoI RAATTY 1 cut(s) 136
AspS9I GGNCC 2 cut(s) 175, 176
AsuHPI GGTGA 1 cut(s) 176
BaeGI GKGCMC 1 cut(s) 179
BanII GRGCYC 1 cut(s) 179
BmgT120I GGNCC 2 cut(s) 175, 176
BmiI GGNNCC 1 cut(s) 177
BmsI GCATC 2 cut(s) 26, 121
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 85
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 2 cut(s) 84, 85
BseSI GKGCMC 1 cut(s) 179
BshFI GGCC 1 cut(s) 177
BslI CCNNNNNNNGG 2 cut(s) 84, 85
BsnI GGCC 1 cut(s) 177
Bsp120I GGGCCC 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 179
BspANI GGCC 1 cut(s) 177
BspLI GGNNCC 1 cut(s) 177
BstF5I GGATG 1 cut(s) 58
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstSLI GKGCMC 1 cut(s) 179
BsuRI GGCC 1 cut(s) 177
BtsCI GGATG 1 cut(s) 58
Cfr13I GGNCC 2 cut(s) 175, 176
Csp6I GTAC 1 cut(s) 114
CviAII CATG 1 cut(s) 180
CviJI RGCY 3 cut(s) 69, 146, 177
CviKI_1 RGCY 3 cut(s) 69, 146, 177
CviQI GTAC 1 cut(s) 114
DraI TTTAAA 2 cut(s) 73, 127
DraIII CACNNNGTG 1 cut(s) 26
Eco24I GRGCYC 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 94
EcoT38I GRGCYC 1 cut(s) 179
FaeI CATG 1 cut(s) 183
FaiI YATR 2 cut(s) 24, 181
FatI CATG 1 cut(s) 179
FokI GGATG 1 cut(s) 65
FriOI GRGCYC 1 cut(s) 179
HaeIII GGCC 1 cut(s) 177
Hin1II CATG 1 cut(s) 183
HphI GGTGA 1 cut(s) 176
Hpy188III TCNNGA 1 cut(s) 141
HpyAV CCTTC 1 cut(s) 118
HpyCH4V TGCA 4 cut(s) 17, 62, 134, 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
Hsp92II CATG 1 cut(s) 183
LpnPI CCDG 2 cut(s) 30, 165
LweI GCATC 2 cut(s) 26, 121
MboII GAAGA 1 cut(s) 33
MhlI GDGCHC 1 cut(s) 179
MluCI AATT 3 cut(s) 57, 122, 136
MmeI TCCRAC 1 cut(s) 30
MnlI CCTC 2 cut(s) 115, 127
MseI TTAA 3 cut(s) 72, 93, 126
MwoI GCNNNNNNNGC 1 cut(s) 152
NlaIII CATG 1 cut(s) 183
NlaIV GGNNCC 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 177
PspOMI GGGCCC 1 cut(s) 175
PspPI GGNCC 2 cut(s) 175, 176
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SaqAI TTAA 3 cut(s) 72, 93, 126
Sau96I GGNCC 2 cut(s) 175, 176
SduI GDGCHC 1 cut(s) 179
SetI ASST 3 cut(s) 99, 119, 148
SfaNI GCATC 2 cut(s) 26, 121
SgeI CNNG 4 cut(s) 19, 57, 153, 164
Sse9I AATT 3 cut(s) 57, 122, 136
TasI AATT 3 cut(s) 57, 122, 136
Tru1I TTAA 3 cut(s) 72, 93, 126
Tru9I TTAA 3 cut(s) 72, 93, 126
TspDTI ATGAA 1 cut(s) 69
XapI RAATTY 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.