pycom10g09230

CYSTM1 family protein A-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
N/A
Physical Location & Seq
Reverse (-)
12207071 .. 12209437
2367 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 381 bp
ATGTCCCCACTCAACATTTGCACAACAGCCCCAGGAACAAAAGATAAAAATTCAGATTTTTTTTTCTGGGTGTTTTGTTTTTTCTTTCTTTTAACACCGCCAACAACAATGAGCTACTACAACCAGCAGCAGCCCCCTGTTGGTGTTCCTCCACCTCAGGGTTATCCACCGGAAGGATATCCTAAAGACGCTTATCCGCCGCCGGGATATCCACCGCAGGGATACCCTCCACCTCAGGGGTACCCCCAAGGGTACCCTCCTCCCTACGCCCCTCAGTATGCCCAGCCTCCCCCCCAACAACAACAAAGCAGCAGCAGTGGCTGTATGGAGGGCTGTTTGGCTGCTCTGTGCTGTTGCTGTCTGCTCGATGCCTGCTTTTGA

Protein Analysis

127

Amino Acids

13.82

Weight (kDa)

4.23

Isoelectric Point (pI)

95.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CYSTM PF12734 85 - 126 1.3e-07 Cysteine-rich TM module stress tolerance
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 240, 252
AccB1I GGYRCC 2 cut(s) 240, 252
AciI CCGC 4 cut(s) 98, 197, 200, 215
AcsI RAATTY 1 cut(s) 49
AfaI GTAC 2 cut(s) 242, 254
AfiI CCNNNNNNNGG 6 cut(s) 140, 158, 173, 203, 218, 236
AjnI CCWGG 1 cut(s) 31
AluBI AGCT 1 cut(s) 114
AluI AGCT 1 cut(s) 114
AlwNI CAGNNNCTG 1 cut(s) 321
ApeKI GCWGC 5 cut(s) 127, 130, 309, 312, 341
ApoI RAATTY 1 cut(s) 49
Asp718I GGTACC 2 cut(s) 240, 252
AsuC2I CCSGG 1 cut(s) 204
AxyI CCTNAGG 2 cut(s) 156, 234
BanI GGYRCC 2 cut(s) 240, 252
BbvI GCAGC 5 cut(s) 139, 142, 321, 324, 328
BciT130I CCWGG 1 cut(s) 33
BciVI GTATCC 1 cut(s) 215
BcnI CCSGG 1 cut(s) 204
BfuI GTATCC 1 cut(s) 215
BisI GCNGC 6 cut(s) 128, 131, 200, 310, 313, 342
BlsI GCNGC 6 cut(s) 129, 132, 201, 311, 314, 343
Bme1390I CCNGG 2 cut(s) 33, 204
BmiI GGNNCC 2 cut(s) 242, 254
BmrFI CCNGG 2 cut(s) 33, 204
BmsI GCATC 1 cut(s) 358
BpuMI CCSGG 1 cut(s) 204
BsaJI CCNNGG 2 cut(s) 31, 247
BsaWI WCCGGW 1 cut(s) 169
Bsc4I CCNNNNNNNGG 6 cut(s) 140, 158, 173, 203, 218, 236
Bse21I CCTNAGG 2 cut(s) 156, 234
BseBI CCWGG 1 cut(s) 33
BseDI CCNNGG 2 cut(s) 31, 247
BseLI CCNNNNNNNGG 6 cut(s) 140, 158, 173, 203, 218, 236
BseMII CTCAG 3 cut(s) 170, 248, 287
BseRI GAGGAG 1 cut(s) 249
BseXI GCAGC 5 cut(s) 139, 142, 321, 324, 328
BseYI CCCAGC 1 cut(s) 282
BshNI GGYRCC 2 cut(s) 240, 252
BsiSI CCGG 2 cut(s) 170, 203
BslI CCNNNNNNNGG 6 cut(s) 140, 158, 173, 203, 218, 236
BspACI CCGC 4 cut(s) 98, 197, 200, 215
BspCNI CTCAG 3 cut(s) 169, 247, 286
BspLI GGNNCC 2 cut(s) 242, 254
BspT107I GGYRCC 2 cut(s) 240, 252
BssECI CCNNGG 2 cut(s) 31, 247
BssT1I CCWWGG 1 cut(s) 247
Bst2UI CCWGG 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 373
BstDEI CTNAG 3 cut(s) 156, 234, 273
BstMWI GCNNNNNNNGC 1 cut(s) 318
BstNI CCWGG 1 cut(s) 33
BstSCI CCNGG 2 cut(s) 31, 202
BstV1I GCAGC 5 cut(s) 139, 142, 321, 324, 328
Bsu36I CCTNAGG 2 cut(s) 156, 234
BsuI GTATCC 1 cut(s) 215
BtsI GCAGTG 1 cut(s) 322
BtsIMutI CAGTG 1 cut(s) 322
Cac8I GCNNGC 1 cut(s) 373
CaiI CAGNNNCTG 1 cut(s) 321
CseI GACGC 1 cut(s) 197
Csp6I GTAC 2 cut(s) 241, 253
CviJI RGCY 7 cut(s) 29, 114, 133, 286, 321, 333, 341
CviKI_1 RGCY 7 cut(s) 29, 114, 133, 286, 321, 333, 341
CviQI GTAC 2 cut(s) 241, 253
DdeI CTNAG 3 cut(s) 156, 234, 273
EciI GGCGGA 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 247
Eco32I GATATC 2 cut(s) 179, 209
Eco81I CCTNAGG 2 cut(s) 156, 234
EcoRII CCWGG 1 cut(s) 31
EcoRV GATATC 2 cut(s) 179, 209
EcoT14I CCWWGG 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 247
FaiI YATR 2 cut(s) 279, 326
Fnu4HI GCNGC 6 cut(s) 128, 131, 200, 310, 313, 342
Fsp4HI GCNGC 6 cut(s) 128, 131, 200, 310, 313, 342
GluI GCNGC 6 cut(s) 128, 131, 200, 310, 313, 342
GsaI CCCAGC 1 cut(s) 286
HapII CCGG 2 cut(s) 170, 203
HgaI GACGC 1 cut(s) 197
HpaII CCGG 2 cut(s) 170, 203
Hpy188I TCNGA 1 cut(s) 55
HpyAV CCTTC 1 cut(s) 167
HpyCH4V TGCA 1 cut(s) 21
HpyF10VI GCNNNNNNNGC 1 cut(s) 318
HpyF3I CTNAG 3 cut(s) 156, 234, 273
KpnI GGTACC 2 cut(s) 244, 256
Lsp1109I GCAGC 5 cut(s) 139, 142, 321, 324, 328
LweI GCATC 1 cut(s) 358
MluCI AATT 1 cut(s) 49
MnlI CCTC 9 cut(s) 159, 165, 237, 243, 267, 270, 282, 297, 322
MseI TTAA 1 cut(s) 92
MspI CCGG 2 cut(s) 170, 203
MspR9I CCNGG 2 cut(s) 33, 204
MvaI CCWGG 1 cut(s) 33
MwoI GCNNNNNNNGC 1 cut(s) 318
NciI CCSGG 1 cut(s) 204
NlaIV GGNNCC 2 cut(s) 242, 254
PkrI GCNGC 6 cut(s) 129, 132, 201, 311, 314, 343
Psp6I CCWGG 1 cut(s) 31
PspFI CCCAGC 1 cut(s) 282
PspGI CCWGG 1 cut(s) 31
PspN4I GGNNCC 2 cut(s) 242, 254
PstNI CAGNNNCTG 1 cut(s) 321
RsaI GTAC 2 cut(s) 242, 254
RsaNI GTAC 2 cut(s) 241, 253
SaqAI TTAA 1 cut(s) 92
SatI GCNGC 6 cut(s) 128, 131, 200, 310, 313, 342
ScrFI CCNGG 2 cut(s) 33, 204
SetI ASST 3 cut(s) 116, 157, 235
SfaNI GCATC 1 cut(s) 358
Sse9I AATT 1 cut(s) 49
SsiI CCGC 4 cut(s) 98, 197, 200, 215
StyD4I CCNGG 2 cut(s) 31, 202
StyI CCWWGG 1 cut(s) 247
TaqI TCGA 1 cut(s) 366
TasI AATT 1 cut(s) 49
TauI GCSGC 1 cut(s) 202
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TscAI CASTG 1 cut(s) 322
TseI GCWGC 5 cut(s) 127, 130, 309, 312, 341
TspRI CASTG 1 cut(s) 322
XapI RAATTY 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.