pycom10g09550

pre-mRNA-processing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
N/A
Physical Location & Seq
Reverse (-)
12648118 .. 12648459
342 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 342 bp
ATGATTCCAAAGAGAAAAAGAGGTCAGGAAGACGATAGTAGGAGACATAGGAAGCGGCATCATAGTGATGAAGATCATGTGAATGGAAATGAGAATGATTGGTCTCGAAAGTCTCATAGAACTAGCAGCGACCACAAGATCAAGGCAGGTATATTAGAAATAATTGTGACCCTTCATTTGATTTATTATCTAAACAGTGATGTAAAGATTTATTATCTAAACAGTGATATAAAGTTTAGCTCGTTTCCAATTTTAATGGCACAGCAGGAACCTGGTCCTGAATCAGATTTCGAAAGCAGACATAGAAGACATAAAAGAGATCGACCAGAATGGTTATCGTAG

Protein Analysis

114

Amino Acids

13.6

Weight (kDa)

9.47

Isoelectric Point (pI)

71.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 137
AciI CCGC 1 cut(s) 55
AjnI CCWGG 1 cut(s) 271
AluBI AGCT 1 cut(s) 240
AluI AGCT 1 cut(s) 240
Alw26I GTCTC 3 cut(s) 37, 108, 117
ApeKI GCWGC 1 cut(s) 126
ArsI GACNNNNNNTTYG 2 cut(s) 160, 192
AspS9I GGNCC 1 cut(s) 275
AsuII TTCGAA 1 cut(s) 291
AvaII GGWCC 1 cut(s) 275
BbsI GAAGAC 2 cut(s) 36, 313
BbvI GCAGC 1 cut(s) 138
BciT130I CCWGG 1 cut(s) 273
BcoDI GTCTC 3 cut(s) 37, 108, 117
BfaI CTAG 1 cut(s) 123
BfuAI ACCTGC 1 cut(s) 137
BisI GCNGC 2 cut(s) 56, 127
BlsI GCNGC 2 cut(s) 57, 128
Bme1390I CCNGG 1 cut(s) 273
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 1 cut(s) 273
BmsI GCATC 1 cut(s) 67
BpiI GAAGAC 2 cut(s) 36, 313
Bpu14I TTCGAA 1 cut(s) 291
BsaBI GATNNNNATC 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 108
Bse8I GATNNNNATC 1 cut(s) 72
BseBI CCWGG 1 cut(s) 273
BseJI GATNNNNATC 1 cut(s) 72
BseXI GCAGC 1 cut(s) 138
BsmAI GTCTC 3 cut(s) 37, 108, 117
Bso31I GGTCTC 1 cut(s) 108
Bsp119I TTCGAA 1 cut(s) 291
Bsp143I GATC 3 cut(s) 73, 138, 319
BspACI CCGC 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 270
BspMI ACCTGC 1 cut(s) 137
BspT104I TTCGAA 1 cut(s) 291
BspTNI GGTCTC 1 cut(s) 108
BssMI GATC 3 cut(s) 73, 138, 319
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 2 cut(s) 197, 224
BstBI TTCGAA 1 cut(s) 291
BstKTI GATC 3 cut(s) 76, 141, 322
BstMAI GTCTC 3 cut(s) 37, 108, 117
BstMBI GATC 3 cut(s) 73, 138, 319
BstNI CCWGG 1 cut(s) 273
BstSCI CCNGG 1 cut(s) 271
BstV1I GCAGC 1 cut(s) 138
BstV2I GAAGAC 2 cut(s) 36, 313
BtsIMutI CAGTG 2 cut(s) 202, 229
BveI ACCTGC 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 275
CsiI ACCWGGT 1 cut(s) 271
CviAII CATG 1 cut(s) 77
CviJI RGCY 1 cut(s) 240
CviKI_1 RGCY 1 cut(s) 240
DpnI GATC 3 cut(s) 75, 140, 321
DpnII GATC 3 cut(s) 73, 138, 319
Eco31I GGTCTC 1 cut(s) 108
Eco47I GGWCC 1 cut(s) 275
EcoRII CCWGG 1 cut(s) 271
FaeI CATG 1 cut(s) 80
FaiI YATR 8 cut(s) 48, 63, 78, 117, 152, 230, 303, 312
FatI CATG 1 cut(s) 76
Fnu4HI GCNGC 2 cut(s) 56, 127
Fsp4HI GCNGC 2 cut(s) 56, 127
FspBI CTAG 1 cut(s) 123
GluI GCNGC 2 cut(s) 56, 127
Hin1II CATG 1 cut(s) 80
HinfI GANTC 2 cut(s) 4, 281
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 3 cut(s) 26, 105, 278
HpyAV CCTTC 1 cut(s) 182
HpyCH4III ACNGT 2 cut(s) 197, 224
Hsp92II CATG 1 cut(s) 80
Kzo9I GATC 3 cut(s) 73, 138, 319
LpnPI CCDG 6 cut(s) 11, 132, 251, 258, 285, 291
Lsp1109I GCAGC 1 cut(s) 138
LweI GCATC 1 cut(s) 67
MabI ACCWGGT 1 cut(s) 271
MaeI CTAG 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 166
MalI GATC 3 cut(s) 75, 140, 321
MboI GATC 3 cut(s) 73, 138, 319
MboII GAAGA 3 cut(s) 41, 83, 318
MluCI AATT 2 cut(s) 162, 249
MnlI CCTC 1 cut(s) 14
MseI TTAA 1 cut(s) 254
MslI CAYNNNNRTG 3 cut(s) 63, 66, 81
MspR9I CCNGG 1 cut(s) 273
MvaI CCWGG 1 cut(s) 273
NdeII GATC 3 cut(s) 73, 138, 319
NlaIII CATG 1 cut(s) 80
NlaIV GGNNCC 1 cut(s) 270
NmuCI GTSAC 1 cut(s) 166
NspV TTCGAA 1 cut(s) 291
PfeI GAWTC 2 cut(s) 4, 281
PkrI GCNGC 2 cut(s) 57, 128
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 1 cut(s) 275
RseI CAYNNNNRTG 3 cut(s) 63, 66, 81
SaqAI TTAA 1 cut(s) 254
SatI GCNGC 2 cut(s) 56, 127
Sau3AI GATC 3 cut(s) 73, 138, 319
Sau96I GGNCC 1 cut(s) 275
ScrFI CCNGG 1 cut(s) 273
SetI ASST 4 cut(s) 25, 151, 242, 274
SexAI ACCWGGT 1 cut(s) 271
SfaNI GCATC 1 cut(s) 67
SfuI TTCGAA 1 cut(s) 291
SinI GGWCC 1 cut(s) 275
SmiMI CAYNNNNRTG 3 cut(s) 63, 66, 81
Sse9I AATT 2 cut(s) 162, 249
SsiI CCGC 1 cut(s) 55
SspMI CTAG 1 cut(s) 123
StyD4I CCNGG 1 cut(s) 271
TaaI ACNGT 2 cut(s) 197, 224
TaqI TCGA 3 cut(s) 106, 291, 322
TasI AATT 2 cut(s) 162, 249
TauI GCSGC 1 cut(s) 58
TfiI GAWTC 2 cut(s) 4, 281
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TscAI CASTG 2 cut(s) 202, 229
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 1 cut(s) 126
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 2 cut(s) 84, 164
TspRI CASTG 2 cut(s) 202, 229
VpaK11BI GGWCC 1 cut(s) 275
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.