pycom10g10660
ERF Family

Belongs to the small GTPase superfamily. Rho family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
N/A
Physical Location & Seq
Forward (+)
14052082 .. 14055249
3168 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 948 bp
ATGAACACTAGTCTAGGACTAAAATCAATTTTTAATCTTTTACGCACAACTTCACGTAACAGTGAGACGGACACACCAAAATTTACTGATCTGGGATGTTTAGTCATTGAGGCACACAGTAACACATTAATATCATACTCTTCTATTATAGCTGGCAAGAGCTGGCTCTTTTTAGGCTCAACCCCTTTCACCTTTCCCTTCCACCTCTCTCTCTCTCTCTCTCTCTCTCTCTGGGTCTCTGTACTTGCCTGGATTGTGGGGGTTAAGAAATCAGAAACCTCTGCTGGAATTTGGATTAGGGTTTTTGAGGAAGCACAAGTAGAAGAAGGAAGAGGCGGAGGTGGGTGGAAAATGAGTGCCTCCAGGTTCATAAAGTGTGTCACAGTTGGGGATGGAGCCGTGGGAAAAACCTGTATGCTCATCTCCTACACCAGCAACACTTTTCCTACGGATTATGTGCCAACTGTGTTTGACAATTTCAGTGCAAATGTTGTTGTGGATGGGAGCACCGTCAATTTGGGGTTGTGGGACACTGCTGGGCAGGAAGATTACAATAGATTAAGACCACTGAGCTATCGTGGGGCAGATGTCTTCCTACTTGCGTTCTCTCTCATAAGCAAGGCCAGCTATGAAAATGTTGCCAAGAAATGGGTTCCCGAATTGAGGCATTATGCACCTAGTGTTCCAATTATTCTTGTTGGAACTAAGCTCGATCTTCGGGATGATAGGCAGTTCTTTGTAGATCACCCTGGTGCAGTGCCAATTACCACAGCACAGGGAGAAGAACTAAAGAAGCTGATTGGGGCTCCAGTTTACATAGAATGCAGTTCAAAAACGCAGCAGAATGTGAAAGCAGTCTTCGATGCAGCCATTAAAGTGGTTCTCCAGCCACCGAAGCAGAAGAAGAAAAAGAAGAGAAAGGCACAGAAGGCCTGCTCCATATTGTGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

316

Amino Acids

34.64

Weight (kDa)

9.31

Isoelectric Point (pI)

39.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 125 - 295 4.7e-49 Ras family
Roc PF08477 125 - 238 3.8e-23 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 648
AciI CCGC 1 cut(s) 336
AcsI RAATTY 2 cut(s) 80, 288
AdeI CACNNNGTG 1 cut(s) 680
AfaI GTAC 1 cut(s) 243
AfiI CCNNNNNNNGG 2 cut(s) 648, 663
AgsI TTSAA 1 cut(s) 831
AhlI ACTAGT 1 cut(s) 8
AjnI CCWGG 3 cut(s) 248, 362, 748
AleI CACNNNNGTG 1 cut(s) 750
AluBI AGCT 6 cut(s) 152, 162, 573, 627, 709, 796
AluI AGCT 6 cut(s) 152, 162, 573, 627, 709, 796
Alw21I GWGCWC 1 cut(s) 509
Alw26I GTCTC 2 cut(s) 59, 241
AoxI GGCC 2 cut(s) 621, 930
ApeKI GCWGC 2 cut(s) 838, 866
ApoI RAATTY 2 cut(s) 80, 288
AseI ATTAAT 1 cut(s) 128
AsuHPI GGTGA 2 cut(s) 181, 737
BanII GRGCYC 1 cut(s) 808
BbsI GAAGAC 2 cut(s) 583, 850
Bbv12I GWGCWC 1 cut(s) 509
BbvI GCAGC 2 cut(s) 850, 878
BccI CCATC 2 cut(s) 386, 494
BceAI ACGGC 1 cut(s) 383
BciT130I CCWGG 3 cut(s) 250, 364, 750
BcoDI GTCTC 2 cut(s) 59, 241
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 3 cut(s) 9, 14, 678
BisI GCNGC 2 cut(s) 839, 867
BlsI GCNGC 2 cut(s) 840, 868
Bme1390I CCNGG 3 cut(s) 250, 364, 750
BmiI GGNNCC 3 cut(s) 397, 654, 807
BmrFI CCNGG 3 cut(s) 250, 364, 750
BmsI GCATC 1 cut(s) 853
BpiI GAAGAC 2 cut(s) 583, 850
BpmI CTGGAG 3 cut(s) 346, 792, 869
BsaAI YACGTR 1 cut(s) 56
BsaI GGTCTC 1 cut(s) 241
BsaJI CCNNGG 2 cut(s) 399, 748
Bsc4I CCNNNNNNNGG 2 cut(s) 648, 663
Bse1I ACTGG 1 cut(s) 809
BseBI CCWGG 3 cut(s) 250, 364, 750
BseDI CCNNGG 2 cut(s) 399, 748
BseGI GGATG 4 cut(s) 101, 397, 505, 727
BseLI CCNNNNNNNGG 2 cut(s) 648, 663
BseMII CTCAG 1 cut(s) 560
BseNI ACTGG 1 cut(s) 809
BseXI GCAGC 2 cut(s) 850, 878
BseYI CCCAGC 1 cut(s) 536
BsgI GTGCAG 1 cut(s) 774
BshFI GGCC 2 cut(s) 623, 932
BsiHKAI GWGCWC 1 cut(s) 509
BslFI GGGAC 1 cut(s) 542
BslI CCNNNNNNNGG 2 cut(s) 648, 663
BsmAI GTCTC 2 cut(s) 59, 241
BsmBI CGTCTC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 542
BsmI GAATGC 1 cut(s) 827
BsnI GGCC 2 cut(s) 623, 932
Bso31I GGTCTC 1 cut(s) 241
Bsp1286I GDGCHC 2 cut(s) 509, 808
Bsp143I GATC 3 cut(s) 88, 712, 742
BspACI CCGC 1 cut(s) 336
BspANI GGCC 2 cut(s) 623, 932
BspCNI CTCAG 1 cut(s) 561
BspLI GGNNCC 3 cut(s) 397, 654, 807
BspTNI GGTCTC 1 cut(s) 241
BsrI ACTGG 1 cut(s) 809
BssECI CCNNGG 2 cut(s) 399, 748
BssMI GATC 3 cut(s) 88, 712, 742
Bst2UI CCWGG 3 cut(s) 250, 364, 750
Bst4CI ACNGT 5 cut(s) 62, 119, 385, 466, 511
Bst6I CTCTTC 3 cut(s) 145, 325, 908
BstBAI YACGTR 1 cut(s) 56
BstC8I GCNNGC 4 cut(s) 154, 164, 625, 934
BstDEI CTNAG 2 cut(s) 569, 705
BstDSI CCRYGG 1 cut(s) 399
BstF5I GGATG 4 cut(s) 101, 397, 505, 727
BstKTI GATC 3 cut(s) 91, 715, 745
BstMAI GTCTC 2 cut(s) 59, 241
BstMBI GATC 3 cut(s) 88, 712, 742
BstMWI GCNNNNNNNGC 3 cut(s) 624, 895, 929
BstNI CCWGG 3 cut(s) 250, 364, 750
BstSCI CCNGG 3 cut(s) 248, 362, 748
BstV1I GCAGC 2 cut(s) 850, 878
BstV2I GAAGAC 2 cut(s) 583, 850
BstXI CCANNNNNNTGG 1 cut(s) 877
BsuRI GGCC 2 cut(s) 623, 932
BtgI CCRYGG 1 cut(s) 399
BtsCI GGATG 4 cut(s) 101, 397, 505, 727
BtsI GCAGTG 2 cut(s) 531, 762
BtsIMutI CAGTG 5 cut(s) 67, 487, 531, 566, 762
Cac8I GCNNGC 4 cut(s) 154, 164, 625, 934
Csp6I GTAC 1 cut(s) 242
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 2 cut(s) 569, 705
DpnI GATC 3 cut(s) 90, 714, 744
DpnII GATC 3 cut(s) 88, 712, 742
DraIII CACNNNGTG 1 cut(s) 680
Eam1104I CTCTTC 3 cut(s) 145, 325, 908
EarI CTCTTC 3 cut(s) 145, 325, 908
EciI GGCGGA 1 cut(s) 351
Eco147I AGGCCT 1 cut(s) 932
Eco24I GRGCYC 1 cut(s) 808
Eco31I GGTCTC 1 cut(s) 241
EcoRII CCWGG 3 cut(s) 248, 362, 748
EcoT38I GRGCYC 1 cut(s) 808
Esp3I CGTCTC 1 cut(s) 59
FaqI GGGAC 1 cut(s) 542
Fnu4HI GCNGC 2 cut(s) 839, 867
FokI GGATG 4 cut(s) 108, 404, 512, 734
FriOI GRGCYC 1 cut(s) 808
Fsp4HI GCNGC 2 cut(s) 839, 867
FspBI CTAG 3 cut(s) 9, 14, 678
GluI GCNGC 2 cut(s) 839, 867
GsaI CCCAGC 1 cut(s) 540
GsuI CTGGAG 3 cut(s) 346, 792, 869
HaeIII GGCC 2 cut(s) 623, 932
HphI GGTGA 2 cut(s) 181, 737
Hpy166II GTNNAC 1 cut(s) 814
Hpy188I TCNGA 1 cut(s) 274
Hpy188III TCNNGA 2 cut(s) 656, 719
Hpy8I GTNNAC 1 cut(s) 814
HpyAV CCTTC 3 cut(s) 208, 320, 922
HpyCH4III ACNGT 5 cut(s) 62, 119, 385, 466, 511
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 5 cut(s) 485, 674, 755, 825, 866
HpyF10VI GCNNNNNNNGC 3 cut(s) 624, 895, 929
HpyF3I CTNAG 2 cut(s) 569, 705
HpySE526I ACGT 1 cut(s) 55
Kzo9I GATC 3 cut(s) 88, 712, 742
LmnI GCTCC 4 cut(s) 395, 504, 811, 941
Lsp1109I GCAGC 2 cut(s) 850, 878
LweI GCATC 1 cut(s) 853
MaeI CTAG 3 cut(s) 9, 14, 678
MaeII ACGT 1 cut(s) 55
MaeIII GTNAC 3 cut(s) 56, 119, 379
MalI GATC 3 cut(s) 90, 714, 744
MboI GATC 3 cut(s) 88, 712, 742
MhlI GDGCHC 2 cut(s) 509, 808
MluCI AATT 8 cut(s) 27, 80, 288, 475, 514, 659, 687, 762
MmeI TCCRAC 1 cut(s) 679
MnlI CCTC 8 cut(s) 103, 215, 289, 301, 326, 332, 370, 657
MseI TTAA 5 cut(s) 33, 128, 264, 560, 873
MslI CAYNNNNRTG 2 cut(s) 750, 875
MspR9I CCNGG 3 cut(s) 250, 364, 750
Mva1269I GAATGC 1 cut(s) 827
MvaI CCWGG 3 cut(s) 250, 364, 750
MwoI GCNNNNNNNGC 3 cut(s) 624, 895, 929
NdeII GATC 3 cut(s) 88, 712, 742
NlaIV GGNNCC 3 cut(s) 397, 654, 807
NmuCI GTSAC 1 cut(s) 379
OliI CACNNNNGTG 1 cut(s) 750
PceI AGGCCT 1 cut(s) 932
PctI GAATGC 1 cut(s) 827
PflMI CCANNNNNTGG 1 cut(s) 648
PkrI GCNGC 2 cut(s) 840, 868
Ppu21I YACGTR 1 cut(s) 56
PshBI ATTAAT 1 cut(s) 128
Psp6I CCWGG 3 cut(s) 248, 362, 748
PspFI CCCAGC 1 cut(s) 536
PspGI CCWGG 3 cut(s) 248, 362, 748
PspN4I GGNNCC 3 cut(s) 397, 654, 807
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
RseI CAYNNNNRTG 2 cut(s) 750, 875
SaqAI TTAA 5 cut(s) 33, 128, 264, 560, 873
SatI GCNGC 2 cut(s) 839, 867
Sau3AI GATC 3 cut(s) 88, 712, 742
ScrFI CCNGG 3 cut(s) 250, 364, 750
SduI GDGCHC 2 cut(s) 509, 808
SfaNI GCATC 1 cut(s) 853
SmiMI CAYNNNNRTG 2 cut(s) 750, 875
SpeI ACTAGT 1 cut(s) 8
Sse9I AATT 8 cut(s) 27, 80, 288, 475, 514, 659, 687, 762
SseBI AGGCCT 1 cut(s) 932
SsiI CCGC 1 cut(s) 336
SspMI CTAG 3 cut(s) 9, 14, 678
StuI AGGCCT 1 cut(s) 932
StyD4I CCNGG 3 cut(s) 248, 362, 748
TaaI ACNGT 5 cut(s) 62, 119, 385, 466, 511
TaiI ACGT 1 cut(s) 58
TaqI TCGA 2 cut(s) 711, 861
TasI AATT 8 cut(s) 27, 80, 288, 475, 514, 659, 687, 762
TatI WGTACW 1 cut(s) 241
Tru1I TTAA 5 cut(s) 33, 128, 264, 560, 873
Tru9I TTAA 5 cut(s) 33, 128, 264, 560, 873
TscAI CASTG 5 cut(s) 67, 487, 538, 573, 762
TseFI GTSAC 1 cut(s) 379
TseI GCWGC 2 cut(s) 838, 866
Tsp45I GTSAC 1 cut(s) 379
TspDTI ATGAA 3 cut(s) 17, 358, 645
TspGWI ACGGA 2 cut(s) 83, 464
TspRI CASTG 5 cut(s) 67, 487, 538, 573, 762
Van91I CCANNNNNTGG 1 cut(s) 648
VspI ATTAAT 1 cut(s) 128
XapI RAATTY 2 cut(s) 80, 288
XspI CTAG 3 cut(s) 9, 14, 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.