Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

14640056 .. 14641001

Gene Structure 946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGGAATAGCGAACCTGTCGAGCCTCGTCCACGAGCTCCGAGAACGCATAGCGGCCCCCTCCACCCCTCCTAACAACCGCTACGACGACGATTTTGGTGACCCGATTCCGCGCCGTCCTCCCCGACCTCCTCCACGCCTCCGTCGTTCCATCTCCCTCAGTACAATGCGACGGCGTTTTGAGCGTAATTTTTTACTGTCTGCAGCGAACGAGCGAGAAGTGATGGCTGTATTGAAGCTCATCGTTATCACTGCCTGGCATTTGCCCGGAGTTTTCCACCGTGGAAAAGCCACCGCAATTCTTCCTCTGCTCGGTCGCATCTTGCCTTTCTTGGCAGAGCCCTCGTTCCGTTCTAGGCATGGAGTAATATTTGAGACCGTTGGACCACTTTTAGCGCTACTTCGTACTGGAGCACGGATGTCTACTGTCAGTTTTTCATTGATTCCATGCTTGTTGTTCGAGTCCTTCAATGGAATTTTTGATGACCCCGATTATCTTGGGGATCTTCCGGCAAGTAATAGACCGGATGATGGATTGGTGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000723 GO:0000726 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006139 GO:0006259 GO:0006278 GO:0006281 GO:0006282 GO:0006302 GO:0006303 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007004 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009506 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010212 GO:0010332 GO:0010833 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031323 GO:0031347 GO:0032200 GO:0032204 GO:0032501 GO:0032504 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043247 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051276 GO:0051321 GO:0051716 GO:0055044 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:1901360 GO:1901362 GO:1901576 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko03460 ko04110 ko04115 ko04214 ko04218 ko05165 ko05166 map03460 map04110 map04115 map04214 map04218 map05165 map05166

Pfam Domains

Protein Families

FAT FATC PI3_PI4_kinase UME

Protein Analysis

182

Amino Acids

20.22

Weight (kDa)

10.29

Isoelectric Point (pI)

52.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	422
AccII	CGCG	1 cut(s)	112
AciI	CCGC	4 cut(s)	53, 79, 110, 294
AclWI	GGATC	1 cut(s)	510
AcsI	RAATTY	1 cut(s)	474
AfaI	GTAC	2 cut(s)	163, 406
AfeI	AGCGCT	1 cut(s)	396
AfiI	CCNNNNNNNGG	2 cut(s)	311, 530
AgsI	TTSAA	2 cut(s)	235, 469
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	2 cut(s)	37, 238
AluI	AGCT	2 cut(s)	37, 238
Alw21I	GWGCWC	2 cut(s)	39, 415
Alw26I	GTCTC	1 cut(s)	368
AlwI	GGATC	1 cut(s)	510
Aor51HI	AGCGCT	1 cut(s)	396
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	1 cut(s)	203
ApoI	RAATTY	1 cut(s)	474
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
AspLEI	GCGC	2 cut(s)	114, 397
AspS9I	GGNCC	2 cut(s)	55, 383
AsuC2I	CCSGG	1 cut(s)	267
AsuHPI	GGTGA	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	383
BanII	GRGCYC	2 cut(s)	39, 342
BauI	CACGAG	1 cut(s)	32
Bbv12I	GWGCWC	2 cut(s)	39, 415
BbvI	GCAGC	1 cut(s)	215
BccI	CCATC	3 cut(s)	158, 217, 524
BceAI	ACGGC	2 cut(s)	99, 188
BcgI	CGANNNNNNTGC	2 cut(s)	324, 358
BciT130I	CCWGG	1 cut(s)	256
BcnI	CCSGG	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	368
BfaI	CTAG	1 cut(s)	354
BfmI	CTRYAG	1 cut(s)	201
BfoI	RGCGCY	1 cut(s)	398
BisI	GCNGC	2 cut(s)	54, 204
BlsI	GCNGC	2 cut(s)	55, 205
Bme1390I	CCNGG	2 cut(s)	256, 267
Bme18I	GGWCC	1 cut(s)	383
BmgT120I	GGNCC	2 cut(s)	55, 383
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	2 cut(s)	256, 267
BmsI	GCATC	1 cut(s)	327
BpmI	CTGGAG	1 cut(s)	429
BpuMI	CCSGG	1 cut(s)	267
BsaI	GGTCTC	1 cut(s)	368
BsaJI	CCNNGG	1 cut(s)	280
BsaWI	WCCGGW	1 cut(s)	523
Bsc4I	CCNNNNNNNGG	2 cut(s)	311, 530
Bse1I	ACTGG	1 cut(s)	412
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	2 cut(s)	423, 532
BseLI	CCNNNNNNNGG	2 cut(s)	311, 530
BseMII	CTCAG	1 cut(s)	172
BseNI	ACTGG	1 cut(s)	412
BseRI	GAGGAG	1 cut(s)	120
BseXI	GCAGC	1 cut(s)	215
Bsh1236I	CGCG	1 cut(s)	112
Bsh1285I	CGRYCG	1 cut(s)	316
BshFI	GGCC	1 cut(s)	56
BsiEI	CGRYCG	1 cut(s)	316
BsiHKAI	GWGCWC	2 cut(s)	39, 415
BsiSI	CCGG	3 cut(s)	267, 509, 524
BslI	CCNNNNNNNGG	2 cut(s)	311, 530
BsmAI	GTCTC	1 cut(s)	368
BsnI	GGCC	1 cut(s)	56
Bso31I	GGTCTC	1 cut(s)	368
Bsp1286I	GDGCHC	3 cut(s)	39, 342, 415
Bsp143I	GATC	1 cut(s)	502
BspACI	CCGC	4 cut(s)	53, 79, 110, 294
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	171
BspFNI	CGCG	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	57
BspMAI	CTGCAG	1 cut(s)	205
BspPI	GGATC	1 cut(s)	510
BspTNI	GGTCTC	1 cut(s)	368
BsrI	ACTGG	1 cut(s)	412
BssECI	CCNNGG	1 cut(s)	280
BssMI	GATC	1 cut(s)	502
BssSI	CACGAG	1 cut(s)	32
Bst2BI	CACGAG	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	256
Bst4CI	ACNGT	4 cut(s)	198, 281, 379, 427
BstDEI	CTNAG	1 cut(s)	158
BstDSI	CCRYGG	1 cut(s)	280
BstEII	GGTNACC	1 cut(s)	98
BstF5I	GGATG	2 cut(s)	423, 532
BstFNI	CGCG	1 cut(s)	112
BstH2I	RGCGCY	1 cut(s)	398
BstHHI	GCGC	2 cut(s)	114, 397
BstKTI	GATC	1 cut(s)	505
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	1 cut(s)	502
BstMCI	CGRYCG	1 cut(s)	316
BstMWI	GCNNNNNNNGC	1 cut(s)	181
BstNI	CCWGG	1 cut(s)	256
BstPI	GGTNACC	1 cut(s)	98
BstSCI	CCNGG	2 cut(s)	254, 265
BstSFI	CTRYAG	1 cut(s)	201
BstUI	CGCG	1 cut(s)	112
BstV1I	GCAGC	1 cut(s)	215
BstX2I	RGATCY	1 cut(s)	502
BstYI	RGATCY	1 cut(s)	502
BsuRI	GGCC	1 cut(s)	56
BtgI	CCRYGG	1 cut(s)	280
BtsCI	GGATG	2 cut(s)	423, 532
BtsI	GCAGTG	1 cut(s)	249
BtsIMutI	CAGTG	1 cut(s)	249
CfoI	GCGC	2 cut(s)	114, 397
Cfr13I	GGNCC	2 cut(s)	55, 383
Csp6I	GTAC	2 cut(s)	162, 405
CviAII	CATG	2 cut(s)	359, 447
CviJI	RGCY	7 cut(s)	24, 37, 56, 227, 238, 290, 340
CviKI_1	RGCY	7 cut(s)	24, 37, 56, 227, 238, 290, 340
CviQI	GTAC	2 cut(s)	162, 405
DdeI	CTNAG	1 cut(s)	158
DpnI	GATC	1 cut(s)	504
DpnII	GATC	1 cut(s)	502
Ecl136II	GAGCTC	1 cut(s)	37
Eco24I	GRGCYC	2 cut(s)	39, 342
Eco31I	GGTCTC	1 cut(s)	368
Eco47I	GGWCC	1 cut(s)	383
Eco47III	AGCGCT	1 cut(s)	396
Eco53kI	GAGCTC	1 cut(s)	37
Eco91I	GGTNACC	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	37
EcoO65I	GGTNACC	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	254
EcoT38I	GRGCYC	2 cut(s)	39, 342
FaeI	CATG	2 cut(s)	362, 450
FaiI	YATR	3 cut(s)	50, 360, 448
FatI	CATG	2 cut(s)	358, 446
FblI	GTMKAC	1 cut(s)	422
Fnu4HI	GCNGC	2 cut(s)	54, 204
FokI	GGATG	2 cut(s)	430, 539
FriOI	GRGCYC	2 cut(s)	39, 342
Fsp4HI	GCNGC	2 cut(s)	54, 204
FspBI	CTAG	1 cut(s)	354
GlaI	GCGC	2 cut(s)	113, 396
GluI	GCNGC	2 cut(s)	54, 204
GsuI	CTGGAG	1 cut(s)	429
HaeII	RGCGCY	1 cut(s)	398
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	3 cut(s)	267, 509, 524
HhaI	GCGC	2 cut(s)	114, 397
Hin1II	CATG	2 cut(s)	362, 450
Hin6I	GCGC	2 cut(s)	112, 395
HinP1I	GCGC	2 cut(s)	112, 395
HinfI	GANTC	3 cut(s)	106, 442, 461
HpaII	CCGG	3 cut(s)	267, 509, 524
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	2 cut(s)	31, 423
Hpy188I	TCNGA	1 cut(s)	41
Hpy188III	TCNNGA	1 cut(s)	543
Hpy8I	GTNNAC	2 cut(s)	31, 423
Hpy99I	CGWCG	4 cut(s)	89, 92, 147, 174
HpyAV	CCTTC	1 cut(s)	475
HpyCH4III	ACNGT	4 cut(s)	198, 281, 379, 427
HpyCH4V	TGCA	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	181
HpyF3I	CTNAG	1 cut(s)	158
Hsp92II	CATG	2 cut(s)	362, 450
HspAI	GCGC	2 cut(s)	112, 395
Kzo9I	GATC	1 cut(s)	502
LmnI	GCTCC	2 cut(s)	42, 410
LpnPI	CCDG	7 cut(s)	29, 241, 268, 280, 393, 522, 537
Lsp1109I	GCAGC	1 cut(s)	215
LweI	GCATC	1 cut(s)	327
MaeI	CTAG	1 cut(s)	354
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	1 cut(s)	504
MboI	GATC	1 cut(s)	502
MboII	GAAGA	2 cut(s)	293, 497
MflI	RGATCY	1 cut(s)	502
MhlI	GDGCHC	3 cut(s)	39, 342, 415
MluCI	AATT	3 cut(s)	187, 297, 474
MlyI	GAGTC	1 cut(s)	470
MmeI	TCCRAC	1 cut(s)	361
MspI	CCGG	3 cut(s)	267, 509, 524
MspR9I	CCNGG	2 cut(s)	256, 267
MvaI	CCWGG	1 cut(s)	256
MvnI	CGCG	1 cut(s)	112
MwoI	GCNNNNNNNGC	1 cut(s)	181
NciI	CCSGG	1 cut(s)	267
NdeII	GATC	1 cut(s)	502
NlaIII	CATG	2 cut(s)	362, 450
NlaIV	GGNNCC	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	1 cut(s)	142
PfeI	GAWTC	2 cut(s)	106, 442
PkrI	GCNGC	2 cut(s)	55, 205
PleI	GAGTC	1 cut(s)	469
PpsI	GAGTC	1 cut(s)	469
Psp124BI	GAGCTC	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	254
PspEI	GGTNACC	1 cut(s)	98
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	57
PspPI	GGNCC	2 cut(s)	55, 383
PstI	CTGCAG	1 cut(s)	205
PsuI	RGATCY	1 cut(s)	502
RsaI	GTAC	2 cut(s)	163, 406
RsaNI	GTAC	2 cut(s)	162, 405
SacI	GAGCTC	1 cut(s)	39
SatI	GCNGC	2 cut(s)	54, 204
Sau3AI	GATC	1 cut(s)	502
Sau96I	GGNCC	2 cut(s)	55, 383
SchI	GAGTC	1 cut(s)	470
ScrFI	CCNGG	2 cut(s)	256, 267
SduI	GDGCHC	3 cut(s)	39, 342, 415
SetI	ASST	4 cut(s)	18, 39, 130, 240
SfaNI	GCATC	1 cut(s)	327
SfcI	CTRYAG	1 cut(s)	201
SinI	GGWCC	1 cut(s)	383
Sse9I	AATT	3 cut(s)	187, 297, 474
SsiI	CCGC	4 cut(s)	53, 79, 110, 294
SspI	AATATT	1 cut(s)	369
SspMI	CTAG	1 cut(s)	354
SstI	GAGCTC	1 cut(s)	39
StyD4I	CCNGG	2 cut(s)	254, 265
TaaI	ACNGT	4 cut(s)	198, 281, 379, 427
TaqI	TCGA	2 cut(s)	20, 459
TaqII	GACCGA	1 cut(s)	302
TasI	AATT	3 cut(s)	187, 297, 474
TatI	WGTACW	1 cut(s)	161
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	2 cut(s)	106, 442
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	1 cut(s)	426
TspGWI	ACGGA	3 cut(s)	131, 338, 430
TspRI	CASTG	1 cut(s)	256
VpaK11BI	GGWCC	1 cut(s)	383
XapI	RAATTY	1 cut(s)	474
XmiI	GTMKAC	1 cut(s)	422
XspI	CTAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.