Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

15026329 .. 15027416

Gene Structure 1088 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGAGCACCAACATCAATCCGGATGTAAAAGATAGAGCACCCCATAATCTTGAGGAGTTGAAAAGGGAAGAATTTATATTTGTGAAGACATTGGAGAGAGGAGAAAAATTTCTTGAGCAAATGCTAGTTGAGGCATTATTAAATGCAAGAGAAAGTGGGACTATACCTTGCTTGTCGGGCAAGGATGCTTTTCTTTTGTATGATACATATGGGTTTCCTGTTGAAATAACAGCAGAAGTGACTGAAGAACGTGGTGTAAGTATAGATATGAATGGTTTTCATACTGAAATGGAAAACCAACGTCGTCAATCTCAGGCTGCACATACTGATGTCAAACTTTCCATGGGAAATAGTGCTGATCTTACGAAAAATGTTCCAAACGCTGAATTTCTTGGCTACAATACGCTTTCTACAGCAGCAATAGTGGAAGGCCTTATAGTGAATGGGAACAAGGTCATGCAGGTTTCCGAAGGAAGTGATGCTGATATATGGTTGAACCAGACTCCATTTTATGCAGAATCAGGTAGTCAAATTGGAGATCACGGAACTTTATATATTCCAGAAGGTGAAAACCAACATAAGGTTGTTGTGGAGATAAAAGATGTCCAAAAATTCGGTAACATATTTATTCATAAGGGTACAATCAGAGAAGGAGTTCTACAGGTTGGTGAAGAAGTGGAAGCAACAGTTGATGCAAAACTAAGGCAACATGCTAAGGTTCATCCTACCGCCACACATTTGCTGCAATCTGCTCTTAAGAAAGTTTTAGGTCATGAAACTTCACAAGTTGGCTCATTGGTGGCTTTTGACCGCTTAAGATTCGATTTCAACTTCTGCCGGCTGCTTACTGACAGTGAGCTTGCTGAAATTGAAAGACTAGTAAATAACCGGGTTGCAGAAGCAATACTGCTTCAAACGAAAGTGATGCCTCTTTCTGCACATAGAAGCTGTGGCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000049 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004812 GO:0004813 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006412 GO:0006418 GO:0006419 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016020 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0031406 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0036094 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

DHHA1 tRNA-synt_2c tRNA_SAD

Protein Analysis

320

Amino Acids

35.56

Weight (kDa)

5.28

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2c	PF01411	5 - 233	4e-49	tRNA synthetases class II (A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	451
AccIII	TCCGGA	1 cut(s)	19
AciI	CCGC	2 cut(s)	729, 811
AcsI	RAATTY	4 cut(s)	71, 107, 386, 611
AcuI	CTGAAG	1 cut(s)	264
AfaI	GTAC	1 cut(s)	640
AfiI	CCNNNNNNNGG	1 cut(s)	580
AflII	CTTAAG	2 cut(s)	755, 814
AgsI	TTSAA	6 cut(s)	61, 224, 496, 829, 872, 914
AhlI	ACTAGT	1 cut(s)	877
AluBI	AGCT	2 cut(s)	859, 948
AluI	AGCT	2 cut(s)	859, 948
Alw21I	GWGCWC	2 cut(s)	8, 40
Aor13HI	TCCGGA	1 cut(s)	19
AoxI	GGCC	1 cut(s)	430
ApeKI	GCWGC	4 cut(s)	317, 416, 742, 841
ApoI	RAATTY	4 cut(s)	71, 107, 386, 611
Asp700I	GAANNNNTTC	2 cut(s)	108, 654
AsuC2I	CCSGG	1 cut(s)	890
AsuHPI	GGTGA	2 cut(s)	578, 680
BarI	GAAGNNNNNNTAC	2 cut(s)	642, 674
BbsI	GAAGAC	1 cut(s)	92
Bbv12I	GWGCWC	2 cut(s)	8, 40
BbvI	GCAGC	4 cut(s)	304, 428, 729, 828
BcgI	CGANNNNNNTGC	2 cut(s)	907, 941
BcnI	CCSGG	1 cut(s)	890
BcuI	ACTAGT	1 cut(s)	877
BfaI	CTAG	2 cut(s)	125, 878
BfmI	CTRYAG	2 cut(s)	411, 659
BfrI	CTTAAG	2 cut(s)	755, 814
BfuAI	ACCTGC	1 cut(s)	451
BisI	GCNGC	4 cut(s)	318, 417, 743, 842
BlsI	GCNGC	4 cut(s)	319, 418, 744, 843
Bme1390I	CCNGG	1 cut(s)	890
BmrFI	CCNGG	1 cut(s)	890
BmsI	GCATC	4 cut(s)	175, 469, 682, 915
BpiI	GAAGAC	1 cut(s)	92
Bpu10I	CCTNAGC	1 cut(s)	714
BpuEI	CTTGAG	2 cut(s)	71, 134
BpuMI	CCSGG	1 cut(s)	890
BsaJI	CCNNGG	1 cut(s)	342
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	580
Bse118I	RCCGGY	1 cut(s)	837
BseAI	TCCGGA	1 cut(s)	19
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	3 cut(s)	28, 190, 721
BseLI	CCNNNNNNNGG	1 cut(s)	580
BseMII	CTCAG	1 cut(s)	326
BseRI	GAGGAG	2 cut(s)	68, 114
BseXI	GCAGC	4 cut(s)	304, 428, 729, 828
BsgI	GTGCAG	2 cut(s)	303, 921
BshFI	GGCC	1 cut(s)	432
BsiHKAI	GWGCWC	2 cut(s)	8, 40
BsiSI	CCGG	3 cut(s)	20, 838, 889
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	580
BsmFI	GGGAC	1 cut(s)	172
BsnI	GGCC	1 cut(s)	432
Bsp1286I	GDGCHC	2 cut(s)	8, 40
Bsp13I	TCCGGA	1 cut(s)	19
Bsp143I	GATC	2 cut(s)	358, 538
Bsp19I	CCATGG	1 cut(s)	342
BspACI	CCGC	2 cut(s)	729, 811
BspANI	GGCC	1 cut(s)	432
BspCNI	CTCAG	1 cut(s)	325
BspEI	TCCGGA	1 cut(s)	19
BspHI	TCATGA	1 cut(s)	772
BspMI	ACCTGC	1 cut(s)	451
BspTI	CTTAAG	2 cut(s)	755, 814
BsrFI	RCCGGY	1 cut(s)	837
BssAI	RCCGGY	1 cut(s)	837
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	2 cut(s)	358, 538
BssT1I	CCWWGG	1 cut(s)	342
Bst4CI	ACNGT	2 cut(s)	688, 854
BstAFI	CTTAAG	2 cut(s)	755, 814
BstC8I	GCNNGC	2 cut(s)	839, 861
BstDEI	CTNAG	3 cut(s)	312, 701, 714
BstDSI	CCRYGG	1 cut(s)	342
BstF5I	GGATG	3 cut(s)	28, 190, 721
BstKTI	GATC	2 cut(s)	361, 541
BstMBI	GATC	2 cut(s)	358, 538
BstMWI	GCNNNNNNNGC	1 cut(s)	177
BstNSI	RCATGY	1 cut(s)	713
BstSCI	CCNGG	1 cut(s)	888
BstSFI	CTRYAG	2 cut(s)	411, 659
BstV1I	GCAGC	4 cut(s)	304, 428, 729, 828
BstV2I	GAAGAC	1 cut(s)	92
BsuRI	GGCC	1 cut(s)	432
BtgI	CCRYGG	1 cut(s)	342
BtsCI	GGATG	3 cut(s)	28, 190, 721
BtsIMutI	CAGTG	1 cut(s)	859
BveI	ACCTGC	1 cut(s)	451
Cac8I	GCNNGC	2 cut(s)	839, 861
CciI	TCATGA	1 cut(s)	772
Cfr10I	RCCGGY	1 cut(s)	837
Csp6I	GTAC	1 cut(s)	639
CviAII	CATG	4 cut(s)	343, 457, 710, 773
CviJI	RGCY	9 cut(s)	317, 396, 432, 792, 803, 841, 859, 948, 954
CviKI_1	RGCY	9 cut(s)	317, 396, 432, 792, 803, 841, 859, 948, 954
CviQI	GTAC	1 cut(s)	639
DdeI	CTNAG	3 cut(s)	312, 701, 714
DpnI	GATC	2 cut(s)	360, 540
DpnII	GATC	2 cut(s)	358, 538
Eco130I	CCWWGG	1 cut(s)	342
Eco147I	AGGCCT	1 cut(s)	432
Eco57I	CTGAAG	1 cut(s)	264
EcoT14I	CCWWGG	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	4 cut(s)	346, 460, 713, 776
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	4 cut(s)	342, 456, 709, 772
FauNDI	CATATG	1 cut(s)	208
Fnu4HI	GCNGC	4 cut(s)	318, 417, 743, 842
FokI	GGATG	3 cut(s)	35, 197, 708
Fsp4HI	GCNGC	4 cut(s)	318, 417, 743, 842
FspBI	CTAG	2 cut(s)	125, 878
GluI	GCNGC	4 cut(s)	318, 417, 743, 842
HaeIII	GGCC	1 cut(s)	432
HapII	CCGG	3 cut(s)	20, 838, 889
Hin1II	CATG	4 cut(s)	346, 460, 713, 776
HinfI	GANTC	3 cut(s)	502, 518, 819
HpaII	CCGG	3 cut(s)	20, 838, 889
HphI	GGTGA	2 cut(s)	578, 680
Hpy188I	TCNGA	2 cut(s)	469, 647
Hpy188III	TCNNGA	5 cut(s)	20, 50, 113, 560, 773
Hpy99I	CGWCG	1 cut(s)	306
HpyAV	CCTTC	4 cut(s)	422, 464, 557, 644
HpyCH4III	ACNGT	2 cut(s)	688, 854
HpyCH4IV	ACGT	2 cut(s)	250, 301
HpyCH4V	TGCA	8 cut(s)	146, 320, 460, 515, 695, 745, 896, 938
HpyF10VI	GCNNNNNNNGC	1 cut(s)	177
HpyF3I	CTNAG	3 cut(s)	312, 701, 714
HpySE526I	ACGT	2 cut(s)	250, 301
Hsp92II	CATG	4 cut(s)	346, 460, 713, 776
Kpn2I	TCCGGA	1 cut(s)	19
KroI	GCCGGC	1 cut(s)	837
KroNI	GCCGGC	1 cut(s)	839
Kzo9I	GATC	2 cut(s)	358, 538
Lsp1109I	GCAGC	4 cut(s)	304, 428, 729, 828
LweI	GCATC	4 cut(s)	175, 469, 682, 915
MaeI	CTAG	2 cut(s)	125, 878
MaeII	ACGT	2 cut(s)	250, 301
MaeIII	GTNAC	2 cut(s)	238, 617
MalI	GATC	2 cut(s)	360, 540
MboI	GATC	2 cut(s)	358, 538
MboII	GAAGA	4 cut(s)	80, 97, 257, 683
MhlI	GDGCHC	2 cut(s)	8, 40
MluCI	AATT	6 cut(s)	71, 107, 386, 531, 611, 867
MlyI	GAGTC	1 cut(s)	496
MnlI	CCTC	4 cut(s)	46, 92, 124, 939
MroI	TCCGGA	1 cut(s)	19
MroNI	GCCGGC	1 cut(s)	837
MroXI	GAANNNNTTC	2 cut(s)	108, 654
MseI	TTAA	3 cut(s)	140, 756, 815
MslI	CAYNNNNRTG	1 cut(s)	327
MspCI	CTTAAG	2 cut(s)	755, 814
MspI	CCGG	3 cut(s)	20, 838, 889
MspR9I	CCNGG	1 cut(s)	890
MwoI	GCNNNNNNNGC	1 cut(s)	177
NaeI	GCCGGC	1 cut(s)	839
NciI	CCSGG	1 cut(s)	890
NcoI	CCATGG	1 cut(s)	342
NdeI	CATATG	1 cut(s)	208
NdeII	GATC	2 cut(s)	358, 538
NgoMIV	GCCGGC	1 cut(s)	837
NlaIII	CATG	4 cut(s)	346, 460, 713, 776
NmuCI	GTSAC	1 cut(s)	238
NspI	RCATGY	1 cut(s)	713
PagI	TCATGA	1 cut(s)	772
PceI	AGGCCT	1 cut(s)	432
PdiI	GCCGGC	1 cut(s)	839
PdmI	GAANNNNTTC	2 cut(s)	108, 654
PfeI	GAWTC	2 cut(s)	518, 819
PkrI	GCNGC	4 cut(s)	319, 418, 744, 843
PleI	GAGTC	1 cut(s)	496
PpsI	GAGTC	1 cut(s)	496
RsaI	GTAC	1 cut(s)	640
RsaNI	GTAC	1 cut(s)	639
RseI	CAYNNNNRTG	1 cut(s)	327
SaqAI	TTAA	3 cut(s)	140, 756, 815
SatI	GCNGC	4 cut(s)	318, 417, 743, 842
Sau3AI	GATC	2 cut(s)	358, 538
SchI	GAGTC	1 cut(s)	496
ScrFI	CCNGG	1 cut(s)	890
SduI	GDGCHC	2 cut(s)	8, 40
SfaNI	GCATC	4 cut(s)	175, 469, 682, 915
SfcI	CTRYAG	2 cut(s)	411, 659
SmiMI	CAYNNNNRTG	1 cut(s)	327
SmlI	CTYRAG	4 cut(s)	50, 113, 755, 814
SmoI	CTYRAG	4 cut(s)	50, 113, 755, 814
SpeI	ACTAGT	1 cut(s)	877
Sse9I	AATT	6 cut(s)	71, 107, 386, 531, 611, 867
SseBI	AGGCCT	1 cut(s)	432
SsiI	CCGC	2 cut(s)	729, 811
SspMI	CTAG	2 cut(s)	125, 878
StuI	AGGCCT	1 cut(s)	432
StyD4I	CCNGG	1 cut(s)	888
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	2 cut(s)	688, 854
TaiI	ACGT	2 cut(s)	253, 304
TaqI	TCGA	1 cut(s)	822
TasI	AATT	6 cut(s)	71, 107, 386, 531, 611, 867
TfiI	GAWTC	2 cut(s)	518, 819
Tru1I	TTAA	3 cut(s)	140, 756, 815
Tru9I	TTAA	3 cut(s)	140, 756, 815
TscAI	CASTG	1 cut(s)	859
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	4 cut(s)	317, 416, 742, 841
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	5 cut(s)	269, 284, 620, 710, 789
TspGWI	ACGGA	1 cut(s)	558
TspRI	CASTG	1 cut(s)	859
Vha464I	CTTAAG	2 cut(s)	755, 814
XapI	RAATTY	4 cut(s)	71, 107, 386, 611
XceI	RCATGY	1 cut(s)	713
XmnI	GAANNNNTTC	2 cut(s)	108, 654
XspI	CTAG	2 cut(s)	125, 878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.