pycom10g12540

Tetraketide alpha-pyrone reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
N/A
Physical Location & Seq
Reverse (-)
16019393 .. 16020431
1039 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 342 bp
ATGGAAGAAGGTAGCTTTGATGATGCAATCTTAGGGTGCCATGGTGTTTTCCACTCTGCTTCCCCTGTTTTGAAACCTTCATCTGATCCCAAGGCATGGTACCCTTTGTCGAAAATTTTAGCTGAGAAAGCAGCATGGGATTTCTGCAAAGAAAATGGGATTCATTTGGTAACCATCCTACCCTCCTTCGTGATCGGGCCTAGTTTGCCCCCTGATTTGTGTTCTACTGCATCAGATGTTCTTGGCCTGCTTAAAGGTACTACTACTGCTGATTCATGTCCCTGCATCATAAGCGCTTCGTTTAATCTTGATCATAAGCGCGTTAAATGGTTATTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase UFD1

Protein Analysis

114

Amino Acids

12.17

Weight (kDa)

5.69

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 99
AccB1I GGYRCC 2 cut(s) 36, 99
AccB7I CCANNNNNTGG 1 cut(s) 96
AccII CGCG 1 cut(s) 321
AclWI GGATC 1 cut(s) 80
AcsI RAATTY 1 cut(s) 114
AfaI GTAC 2 cut(s) 101, 259
AfeI AGCGCT 1 cut(s) 295
AfiI CCNNNNNNNGG 1 cut(s) 96
AgsI TTSAA 1 cut(s) 73
AluBI AGCT 2 cut(s) 15, 122
AluI AGCT 2 cut(s) 15, 122
AlwI GGATC 1 cut(s) 80
Aor51HI AGCGCT 1 cut(s) 295
AoxI GGCC 2 cut(s) 197, 244
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 1 cut(s) 114
Asp718I GGTACC 1 cut(s) 99
AspLEI GCGC 2 cut(s) 296, 321
AspS9I GGNCC 1 cut(s) 197
BanI GGYRCC 2 cut(s) 36, 99
BbvI GCAGC 1 cut(s) 143
BccI CCATC 1 cut(s) 182
BclI TGATCA 1 cut(s) 310
BfaI CTAG 1 cut(s) 201
BfoI RGCGCY 1 cut(s) 297
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 2 cut(s) 38, 101
BmsI GCATC 3 cut(s) 13, 239, 294
BsaJI CCNNGG 2 cut(s) 40, 90
Bsc4I CCNNNNNNNGG 1 cut(s) 96
BseDI CCNNGG 2 cut(s) 40, 90
BseGI GGATG 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 96
BseMII CTCAG 1 cut(s) 114
BseXI GCAGC 1 cut(s) 143
Bsh1236I CGCG 1 cut(s) 321
BshFI GGCC 2 cut(s) 199, 246
BshNI GGYRCC 2 cut(s) 36, 99
BslFI GGGAC 1 cut(s) 264
BslI CCNNNNNNNGG 1 cut(s) 96
BsmFI GGGAC 1 cut(s) 264
BsnI GGCC 2 cut(s) 199, 246
Bsp143I GATC 3 cut(s) 85, 192, 310
Bsp19I CCATGG 1 cut(s) 40
BspANI GGCC 2 cut(s) 199, 246
BspCNI CTCAG 1 cut(s) 115
BspFNI CGCG 1 cut(s) 321
BspLI GGNNCC 2 cut(s) 38, 101
BspPI GGATC 1 cut(s) 80
BspT107I GGYRCC 2 cut(s) 36, 99
BssECI CCNNGG 2 cut(s) 40, 90
BssMI GATC 3 cut(s) 85, 192, 310
BssT1I CCWWGG 2 cut(s) 40, 90
BstC8I GCNNGC 1 cut(s) 248
BstDEI CTNAG 2 cut(s) 31, 123
BstDSI CCRYGG 1 cut(s) 40
BstEII GGTNACC 1 cut(s) 169
BstF5I GGATG 1 cut(s) 174
BstFNI CGCG 1 cut(s) 321
BstH2I RGCGCY 1 cut(s) 297
BstHHI GCGC 2 cut(s) 296, 321
BstKTI GATC 3 cut(s) 88, 195, 313
BstMBI GATC 3 cut(s) 85, 192, 310
BstMWI GCNNNNNNNGC 3 cut(s) 128, 205, 291
BstPI GGTNACC 1 cut(s) 169
BstUI CGCG 1 cut(s) 321
BstV1I GCAGC 1 cut(s) 143
BsuRI GGCC 2 cut(s) 199, 246
BtgI CCRYGG 1 cut(s) 40
BtsCI GGATG 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 248
CfoI GCGC 2 cut(s) 296, 321
Cfr13I GGNCC 1 cut(s) 197
Csp6I GTAC 2 cut(s) 100, 258
CviAII CATG 4 cut(s) 41, 96, 135, 276
CviJI RGCY 4 cut(s) 15, 122, 199, 246
CviKI_1 RGCY 4 cut(s) 15, 122, 199, 246
CviQI GTAC 2 cut(s) 100, 258
DdeI CTNAG 2 cut(s) 31, 123
DpnI GATC 3 cut(s) 87, 194, 312
DpnII GATC 3 cut(s) 85, 192, 310
Eco130I CCWWGG 2 cut(s) 40, 90
Eco47III AGCGCT 1 cut(s) 295
Eco91I GGTNACC 1 cut(s) 169
EcoO65I GGTNACC 1 cut(s) 169
EcoT14I CCWWGG 2 cut(s) 40, 90
ErhI CCWWGG 2 cut(s) 40, 90
FaeI CATG 4 cut(s) 44, 99, 138, 279
FaiI YATR 6 cut(s) 42, 97, 136, 277, 290, 315
FaqI GGGAC 1 cut(s) 264
FatI CATG 4 cut(s) 40, 95, 134, 275
FbaI TGATCA 1 cut(s) 310
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 1 cut(s) 161
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 1 cut(s) 201
GlaI GCGC 2 cut(s) 295, 320
GluI GCNGC 1 cut(s) 132
HaeII RGCGCY 1 cut(s) 297
HaeIII GGCC 2 cut(s) 199, 246
HhaI GCGC 2 cut(s) 296, 321
Hin1II CATG 4 cut(s) 44, 99, 138, 279
Hin6I GCGC 2 cut(s) 294, 319
HinP1I GCGC 2 cut(s) 294, 319
HinfI GANTC 2 cut(s) 160, 272
Hpy188I TCNGA 2 cut(s) 85, 235
Hpy188III TCNNGA 2 cut(s) 190, 308
HpyAV CCTTC 2 cut(s) 87, 196
HpyCH4V TGCA 4 cut(s) 26, 147, 230, 285
HpyF10VI GCNNNNNNNGC 3 cut(s) 128, 205, 291
HpyF3I CTNAG 2 cut(s) 31, 123
Hsp92II CATG 4 cut(s) 44, 99, 138, 279
HspAI GCGC 2 cut(s) 294, 319
KpnI GGTACC 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 3 cut(s) 85, 192, 310
LpnPI CCDG 4 cut(s) 78, 225, 260, 295
Lsp1109I GCAGC 1 cut(s) 143
LweI GCATC 3 cut(s) 13, 239, 294
MaeI CTAG 1 cut(s) 201
MaeIII GTNAC 1 cut(s) 169
MalI GATC 3 cut(s) 87, 194, 312
MboI GATC 3 cut(s) 85, 192, 310
MboII GAAGA 1 cut(s) 17
MluCI AATT 1 cut(s) 114
MnlI CCTC 1 cut(s) 193
MseI TTAA 3 cut(s) 252, 303, 324
MvnI CGCG 1 cut(s) 321
MwoI GCNNNNNNNGC 3 cut(s) 128, 205, 291
NcoI CCATGG 1 cut(s) 40
NdeII GATC 3 cut(s) 85, 192, 310
NlaIII CATG 4 cut(s) 44, 99, 138, 279
NlaIV GGNNCC 2 cut(s) 38, 101
PfeI GAWTC 2 cut(s) 160, 272
PflMI CCANNNNNTGG 1 cut(s) 96
PkrI GCNGC 1 cut(s) 133
PspEI GGTNACC 1 cut(s) 169
PspN4I GGNNCC 2 cut(s) 38, 101
PspPI GGNCC 1 cut(s) 197
RsaI GTAC 2 cut(s) 101, 259
RsaNI GTAC 2 cut(s) 100, 258
SaqAI TTAA 3 cut(s) 252, 303, 324
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 3 cut(s) 85, 192, 310
Sau96I GGNCC 1 cut(s) 197
SetI ASST 5 cut(s) 13, 17, 79, 124, 259
SfaNI GCATC 3 cut(s) 13, 239, 294
Sse9I AATT 1 cut(s) 114
SspMI CTAG 1 cut(s) 201
StyI CCWWGG 2 cut(s) 40, 90
TaqI TCGA 1 cut(s) 110
TasI AATT 1 cut(s) 114
TfiI GAWTC 2 cut(s) 160, 272
Tru1I TTAA 3 cut(s) 252, 303, 324
Tru9I TTAA 3 cut(s) 252, 303, 324
TseI GCWGC 1 cut(s) 131
TspDTI ATGAA 3 cut(s) 69, 152, 264
Van91I CCANNNNNTGG 1 cut(s) 96
XapI RAATTY 1 cut(s) 114
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.