Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

16035174 .. 16037408

Gene Structure 2235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGAGGGTAACATGCTCGTTTGCTGAGAGAGACAGCAAAACCAAAAATTTTAAAAATAAAAAAATTAAATTAGCCAGCCAATATATCCCAAAGCCTTCCCCTTTGTCTTTTACTTTGTTTTTATATTTCTATGTTTATATAACCCACATAGCTCTTTGGCTTTGTTTCTTGAGGGAGGTGGTGACCGACTTCTGCAGCCTGCAACTCTGTCTGCTTTTGTTGTCCGCCTCTCTTCCGATCGATAAAAATTCAAAATCCAAGATCCGAAGTTGGGGAGGAGAGGATTTGGAAATTTTGGGTTTTTTTGGATTCGAGCTCGGAATTGCAGAAATGGAGAAGGAAAAGAAGTCTCCTGTGTCCGATGTGGGAGCTTGGGGAATGAATATTGTGAGCTCTGTGGGCATTATCATGGCCAACAAGCAGCTCATGTCCCCTAACGGCTTTGCTTTCGGCTTCGCTACAACTTTGACCGGATTCCATTTCTCTGTTACTGCTTTGGTCGGTCTGGTGTCAAATGCCACTGGTTACTCTGCATCTAAGCATGTTCCTCTGTGGGAACTTGTTTGGTTCTCACTTGTTGCCAATGCCTCAATCACCGGGATGAACTTGAGCCTCATGCTTAACTCTGTCGGATTTTATCAGATATCGAAGTTGAGCATGATTCCGGTGGTTTGTGTGATGGAGTGGATTCTTCATCGAAAGCATTTTTCACGGGAAGTCAAGATTGCAGTGGGAGTAGTGGTTGTAGGCGTGGGTTCCTTGCAAAAGAAATACTCGATAGGCTCTTTTGAATTGCTCAGCAAGACAGCTCCCATTCAAGCTCTGTCTCTTCTTGTTCTTGGTCCATTCGTCGATTACTTTCTTACTGGAAAACTTCTGTCTGATTACAAGTTGTCTACTGGTGCATTTTTTTTCATCCTACTCTCATGCTCCCTAGCGGTGTTTTGCAACATCAGCCAGTACCTCTGCATCGGCCGCTTCTCAGCTGTCTCTTTCCAGGTTTTGGGCCACATGAAAACAGTATGTGTCCTGACATTGGGGTGGCTACTCTTTGATTCCCAGCTCACATTCAAAAACTTGCTGGGCATGGCTCTTGCTGTTCTTGGCATGATCGTATACAGCTGGGCTGTGGAGGCTGAGAAGCATCCCAAGGTCCTCCCCAGTCATCTGTCAGAAGAGGATCTGAAACCGCTAAAGGAGGGAGTAGCCGAGAGTCCATTGAAAGACGTGGTGATTGGCGAGTCCAAAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0015291 GO:0015297 GO:0015780 GO:0015931 GO:0022804 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090480 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

418

Amino Acids

46.04

Weight (kDa)

8.98

Isoelectric Point (pI)

28.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	270 - 374	1.8e-07	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1003
AccI	GTMKAC	2 cut(s)	896, 1116
AciI	CCGC	4 cut(s)	225, 938, 976, 1190
AclWI	GGATC	2 cut(s)	256, 1188
AcoI	YGGCCR	2 cut(s)	411, 973
AcsI	RAATTY	3 cut(s)	46, 247, 291
AfaI	GTAC	1 cut(s)	962
AfiI	CCNNNNNNNGG	3 cut(s)	271, 1003, 1036
AgsI	TTSAA	5 cut(s)	252, 791, 818, 1072, 1222
AjiI	CACGTC	1 cut(s)	1228
AjnI	CCWGG	1 cut(s)	996
Alw21I	GWGCWC	2 cut(s)	318, 395
Alw26I	GTCTC	4 cut(s)	24, 354, 831, 994
AlwI	GGATC	2 cut(s)	256, 1188
AoxI	GGCC	3 cut(s)	411, 973, 1006
ApeKI	GCWGC	2 cut(s)	195, 421
ApoI	RAATTY	3 cut(s)	46, 247, 291
AspS9I	GGNCC	3 cut(s)	842, 1006, 1153
AsuC2I	CCSGG	1 cut(s)	598
AsuHPI	GGTGA	3 cut(s)	193, 586, 1243
AvaII	GGWCC	2 cut(s)	842, 1153
BalI	TGGCCA	1 cut(s)	413
BanII	GRGCYC	2 cut(s)	318, 395
Bbv12I	GWGCWC	2 cut(s)	318, 395
BbvI	GCAGC	2 cut(s)	207, 433
BccI	CCATC	1 cut(s)	673
BceAI	ACGGC	1 cut(s)	454
BciT130I	CCWGG	1 cut(s)	998
BcnI	CCSGG	1 cut(s)	598
BcoDI	GTCTC	4 cut(s)	24, 354, 831, 994
BfaI	CTAG	1 cut(s)	935
BfmI	CTRYAG	1 cut(s)	193
BisI	GCNGC	3 cut(s)	196, 422, 976
BlpI	GCTNAGC	1 cut(s)	797
BlsI	GCNGC	3 cut(s)	197, 423, 977
Bme1390I	CCNGG	2 cut(s)	598, 998
Bme18I	GGWCC	2 cut(s)	842, 1153
BmgBI	CACGTC	1 cut(s)	1228
BmgT120I	GGNCC	3 cut(s)	842, 1006, 1153
BmiI	GGNNCC	1 cut(s)	757
BmrFI	CCNGG	2 cut(s)	598, 998
BmrI	ACTGGG	1 cut(s)	1155
BmsI	GCATC	3 cut(s)	542, 978, 1153
BmuI	ACTGGG	1 cut(s)	1155
Bpu1102I	GCTNAGC	1 cut(s)	797
BpuEI	CTTGAG	2 cut(s)	190, 628
BpuMI	CCSGG	1 cut(s)	598
Bsa29I	ATCGAT	1 cut(s)	240
BsaJI	CCNNGG	1 cut(s)	1149
BsaWI	WCCGGW	2 cut(s)	470, 664
BsaXI	ACNNNNNCTCC	2 cut(s)	726, 756
Bsc4I	CCNNNNNNNGG	3 cut(s)	271, 1003, 1036
Bse1I	ACTGG	5 cut(s)	526, 871, 904, 958, 1161
BseBI	CCWGG	1 cut(s)	998
BseCI	ATCGAT	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	1149
BseGI	GGATG	3 cut(s)	606, 915, 1144
BseLI	CCNNNNNNNGG	3 cut(s)	271, 1003, 1036
BseMII	CTCAG	4 cut(s)	15, 811, 996, 1128
BseNI	ACTGG	5 cut(s)	526, 871, 904, 958, 1161
BseRI	GAGGAG	1 cut(s)	291
BseX3I	CGGCCG	1 cut(s)	973
BseXI	GCAGC	2 cut(s)	207, 433
BseYI	CCCAGC	3 cut(s)	1059, 1081, 1122
Bsh1285I	CGRYCG	2 cut(s)	240, 976
BshFI	GGCC	3 cut(s)	413, 975, 1008
BshVI	ATCGAT	1 cut(s)	240
BsiEI	CGRYCG	2 cut(s)	240, 976
BsiHKAI	GWGCWC	2 cut(s)	318, 395
BsiSI	CCGG	3 cut(s)	471, 597, 665
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	3 cut(s)	271, 1003, 1036
BsmAI	GTCTC	4 cut(s)	24, 354, 831, 994
BsmFI	GGGAC	1 cut(s)	415
BsnI	GGCC	3 cut(s)	413, 975, 1008
Bsp1286I	GDGCHC	2 cut(s)	318, 395
Bsp143I	GATC	4 cut(s)	237, 261, 1110, 1180
Bsp1720I	GCTNAGC	1 cut(s)	797
BspACI	CCGC	4 cut(s)	225, 938, 976, 1190
BspANI	GGCC	3 cut(s)	413, 975, 1008
BspCNI	CTCAG	4 cut(s)	16, 810, 995, 1129
BspDI	ATCGAT	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	757
BspMAI	CTGCAG	1 cut(s)	197
BspPI	GGATC	2 cut(s)	256, 1188
BsrI	ACTGG	5 cut(s)	526, 871, 904, 958, 1161
BssECI	CCNNGG	1 cut(s)	1149
BssMI	GATC	4 cut(s)	237, 261, 1110, 1180
BssNAI	GTATAC	1 cut(s)	1117
BssT1I	CCWWGG	1 cut(s)	1149
Bst1107I	GTATAC	1 cut(s)	1117
Bst2UI	CCWGG	1 cut(s)	998
Bst4CI	ACNGT	1 cut(s)	1021
Bst6I	CTCTTC	3 cut(s)	237, 834, 1170
BstC8I	GCNNGC	2 cut(s)	76, 200
BstDEI	CTNAG	5 cut(s)	24, 537, 797, 982, 1137
BstEII	GGTNACC	1 cut(s)	181
BstF5I	GGATG	3 cut(s)	606, 915, 1144
BstKTI	GATC	4 cut(s)	240, 264, 1113, 1183
BstMAI	GTCTC	4 cut(s)	24, 354, 831, 994
BstMBI	GATC	4 cut(s)	237, 261, 1110, 1180
BstMCI	CGRYCG	2 cut(s)	240, 976
BstMWI	GCNNNNNNNGC	4 cut(s)	399, 954, 975, 1133
BstNI	CCWGG	1 cut(s)	998
BstNSI	RCATGY	2 cut(s)	15, 545
BstPI	GGTNACC	1 cut(s)	181
BstSCI	CCNGG	2 cut(s)	596, 996
BstSFI	CTRYAG	1 cut(s)	193
BstV1I	GCAGC	2 cut(s)	207, 433
BstX2I	RGATCY	2 cut(s)	261, 1180
BstYI	RGATCY	2 cut(s)	261, 1180
BstZ17I	GTATAC	1 cut(s)	1117
BstZI	CGGCCG	1 cut(s)	973
Bsu15I	ATCGAT	1 cut(s)	240
BsuRI	GGCC	3 cut(s)	413, 975, 1008
BsuTUI	ATCGAT	1 cut(s)	240
BtrI	CACGTC	1 cut(s)	1228
BtsCI	GGATG	3 cut(s)	606, 915, 1144
BtsI	GCAGTG	1 cut(s)	735
BtsIMutI	CAGTG	2 cut(s)	519, 735
Cac8I	GCNNGC	2 cut(s)	76, 200
Cfr13I	GGNCC	3 cut(s)	842, 1006, 1153
ClaI	ATCGAT	1 cut(s)	240
Csp6I	GTAC	1 cut(s)	961
CviQI	GTAC	1 cut(s)	961
DdeI	CTNAG	5 cut(s)	24, 537, 797, 982, 1137
DpnI	GATC	4 cut(s)	239, 263, 1112, 1182
DpnII	GATC	4 cut(s)	237, 261, 1110, 1180
DraI	TTTAAA	1 cut(s)	52
EaeI	YGGCCR	2 cut(s)	411, 973
EagI	CGGCCG	1 cut(s)	973
Eam1104I	CTCTTC	3 cut(s)	237, 834, 1170
EarI	CTCTTC	3 cut(s)	237, 834, 1170
EciI	GGCGGA	1 cut(s)	214
Ecl136II	GAGCTC	2 cut(s)	316, 393
EclXI	CGGCCG	1 cut(s)	973
Eco130I	CCWWGG	1 cut(s)	1149
Eco24I	GRGCYC	2 cut(s)	318, 395
Eco32I	GATATC	1 cut(s)	645
Eco47I	GGWCC	2 cut(s)	842, 1153
Eco52I	CGGCCG	1 cut(s)	973
Eco53kI	GAGCTC	2 cut(s)	316, 393
Eco91I	GGTNACC	1 cut(s)	181
EcoICRI	GAGCTC	2 cut(s)	316, 393
EcoO109I	RGGNCCY	1 cut(s)	1153
EcoO65I	GGTNACC	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	996
EcoRV	GATATC	1 cut(s)	645
EcoT14I	CCWWGG	1 cut(s)	1149
EcoT38I	GRGCYC	2 cut(s)	318, 395
ErhI	CCWWGG	1 cut(s)	1149
FaqI	GGGAC	1 cut(s)	415
FblI	GTMKAC	2 cut(s)	896, 1116
Fnu4HI	GCNGC	3 cut(s)	196, 422, 976
FokI	GGATG	3 cut(s)	613, 902, 1131
FriOI	GRGCYC	2 cut(s)	318, 395
Fsp4HI	GCNGC	3 cut(s)	196, 422, 976
FspBI	CTAG	1 cut(s)	935
GluI	GCNGC	3 cut(s)	196, 422, 976
GsaI	CCCAGC	3 cut(s)	1063, 1085, 1126
HaeIII	GGCC	3 cut(s)	413, 975, 1008
HapII	CCGG	3 cut(s)	471, 597, 665
HinfI	GANTC	7 cut(s)	309, 474, 661, 688, 1055, 1213, 1241
HpaII	CCGG	3 cut(s)	471, 597, 665
HphI	GGTGA	3 cut(s)	193, 586, 1243
Hpy166II	GTNNAC	2 cut(s)	897, 1117
Hpy188I	TCNGA	9 cut(s)	237, 266, 320, 361, 632, 642, 883, 1174, 1185
Hpy188III	TCNNGA	3 cut(s)	169, 721, 1030
Hpy8I	GTNNAC	2 cut(s)	897, 1117
Hpy99I	CGWCG	1 cut(s)	854
HpyAV	CCTTC	2 cut(s)	105, 331
HpyCH4III	ACNGT	1 cut(s)	1021
HpyCH4IV	ACGT	1 cut(s)	1227
HpyCH4V	TGCA	9 cut(s)	195, 202, 326, 533, 728, 763, 905, 948, 969
HpyF10VI	GCNNNNNNNGC	4 cut(s)	399, 954, 975, 1133
HpyF3I	CTNAG	5 cut(s)	24, 537, 797, 982, 1137
HpySE526I	ACGT	1 cut(s)	1227
Kzo9I	GATC	4 cut(s)	237, 261, 1110, 1180
LmnI	GCTCC	3 cut(s)	368, 814, 935
Lsp1109I	GCAGC	2 cut(s)	207, 433
LweI	GCATC	3 cut(s)	542, 978, 1153
MaeI	CTAG	1 cut(s)	935
MaeII	ACGT	1 cut(s)	1227
MaeIII	GTNAC	4 cut(s)	7, 181, 487, 524
MalI	GATC	4 cut(s)	239, 263, 1112, 1182
MboI	GATC	4 cut(s)	237, 261, 1110, 1180
MboII	GAAGA	4 cut(s)	224, 683, 821, 1187
MflI	RGATCY	2 cut(s)	261, 1180
MhlI	GDGCHC	2 cut(s)	318, 395
MlsI	TGGCCA	1 cut(s)	413
MluCI	AATT	7 cut(s)	46, 63, 68, 247, 291, 321, 791
MluNI	TGGCCA	1 cut(s)	413
MlyI	GAGTC	2 cut(s)	1222, 1250
MmeI	TCCRAC	1 cut(s)	610
Mox20I	TGGCCA	1 cut(s)	413
MscI	TGGCCA	1 cut(s)	413
MseI	TTAA	3 cut(s)	51, 66, 621
MslI	CAYNNNNRTG	3 cut(s)	407, 599, 1039
Msp20I	TGGCCA	1 cut(s)	413
MspA1I	CMGCKG	2 cut(s)	986, 1122
MspI	CCGG	3 cut(s)	471, 597, 665
MspR9I	CCNGG	2 cut(s)	598, 998
MvaI	CCWGG	1 cut(s)	998
MwoI	GCNNNNNNNGC	4 cut(s)	399, 954, 975, 1133
NciI	CCSGG	1 cut(s)	598
NdeII	GATC	4 cut(s)	237, 261, 1110, 1180
NlaIV	GGNNCC	1 cut(s)	757
NmeAIII	GCCGAG	1 cut(s)	1234
NmuCI	GTSAC	1 cut(s)	181
NspI	RCATGY	2 cut(s)	15, 545
PfeI	GAWTC	5 cut(s)	309, 474, 661, 688, 1055
PflMI	CCANNNNNTGG	1 cut(s)	1003
PkrI	GCNGC	3 cut(s)	197, 423, 977
Ple19I	CGATCG	1 cut(s)	240
PleI	GAGTC	2 cut(s)	1221, 1249
PpsI	GAGTC	2 cut(s)	1221, 1249
PpuMI	RGGWCCY	1 cut(s)	1153
Psp124BI	GAGCTC	2 cut(s)	318, 395
Psp5II	RGGWCCY	1 cut(s)	1153
Psp6I	CCWGG	1 cut(s)	996
PspEI	GGTNACC	1 cut(s)	181
PspFI	CCCAGC	3 cut(s)	1059, 1081, 1122
PspGI	CCWGG	1 cut(s)	996
PspN4I	GGNNCC	1 cut(s)	757
PspPI	GGNCC	3 cut(s)	842, 1006, 1153
PspPPI	RGGWCCY	1 cut(s)	1153
PstI	CTGCAG	1 cut(s)	197
PsuI	RGATCY	2 cut(s)	261, 1180
PvuI	CGATCG	1 cut(s)	240
PvuII	CAGCTG	2 cut(s)	986, 1122
RsaI	GTAC	1 cut(s)	962
RsaNI	GTAC	1 cut(s)	961
RseI	CAYNNNNRTG	3 cut(s)	407, 599, 1039
SacI	GAGCTC	2 cut(s)	318, 395
SaqAI	TTAA	3 cut(s)	51, 66, 621
SatI	GCNGC	3 cut(s)	196, 422, 976
Sau3AI	GATC	4 cut(s)	237, 261, 1110, 1180
Sau96I	GGNCC	3 cut(s)	842, 1006, 1153
SchI	GAGTC	2 cut(s)	1222, 1250
ScrFI	CCNGG	2 cut(s)	598, 998
SduI	GDGCHC	2 cut(s)	318, 395
SfaNI	GCATC	3 cut(s)	542, 978, 1153
SfcI	CTRYAG	1 cut(s)	193
SinI	GGWCC	2 cut(s)	842, 1153
SmiMI	CAYNNNNRTG	3 cut(s)	407, 599, 1039
SmlI	CTYRAG	2 cut(s)	169, 607
SmoI	CTYRAG	2 cut(s)	169, 607
Sse9I	AATT	7 cut(s)	46, 63, 68, 247, 291, 321, 791
SsiI	CCGC	4 cut(s)	225, 938, 976, 1190
SspI	AATATT	1 cut(s)	385
SspMI	CTAG	1 cut(s)	935
SstI	GAGCTC	2 cut(s)	318, 395
StyD4I	CCNGG	2 cut(s)	596, 996
StyI	CCWWGG	1 cut(s)	1149
TaaI	ACNGT	1 cut(s)	1021
TaiI	ACGT	1 cut(s)	1230
TaqI	TCGA	6 cut(s)	240, 312, 647, 697, 776, 852
TaqII	GACCGA	2 cut(s)	200, 491
TasI	AATT	7 cut(s)	46, 63, 68, 247, 291, 321, 791
TauI	GCSGC	1 cut(s)	978
TfiI	GAWTC	5 cut(s)	309, 474, 661, 688, 1055
Tru1I	TTAA	3 cut(s)	51, 66, 621
Tru9I	TTAA	3 cut(s)	51, 66, 621
TscAI	CASTG	2 cut(s)	526, 735
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	2 cut(s)	195, 421
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	5 cut(s)	395, 617, 683, 904, 1028
TspRI	CASTG	2 cut(s)	526, 735
Van91I	CCANNNNNTGG	1 cut(s)	1003
VpaK11BI	GGWCC	2 cut(s)	842, 1153
XapI	RAATTY	3 cut(s)	46, 247, 291
XceI	RCATGY	2 cut(s)	15, 545
XmiI	GTMKAC	2 cut(s)	896, 1116
XspI	CTAG	1 cut(s)	935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.