pycom10g12590

Leucine-rich repeat - CC (cysteine-containing) subfamily

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
N/A
Physical Location & Seq
Forward (+)
16059000 .. 16059227
228 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 228 bp
ATGAGTTGTCACAAGTTGGAGAAGCTTCATGTCAACCAGTGTCGGAATCTATGTGATCAGGGTTTAGTGGCTTTGCGGAATGGTTGCAAACAACTCTCCGTTTTGTACATGAACGGTTGTCCTAAGATTACTTCAACAGCAATAGAGTTGTTCAAATGTTATAGGAGTGAGGTTACCATTAAGAATGAAGAGAAAATGTGCATAGGTCCCATCTGGGAGTTGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

76

Amino Acids

8.63

Weight (kDa)

8.75

Isoelectric Point (pI)

57.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 76
AfaI GTAC 1 cut(s) 107
AgsI TTSAA 2 cut(s) 135, 154
AluBI AGCT 1 cut(s) 25
AluI AGCT 1 cut(s) 25
AspS9I GGNCC 1 cut(s) 206
AvaII GGWCC 1 cut(s) 206
BccI CCATC 1 cut(s) 218
BclI TGATCA 1 cut(s) 55
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 206
BmiI GGNNCC 1 cut(s) 208
Bse1I ACTGG 1 cut(s) 37
BseNI ACTGG 1 cut(s) 37
BslFI GGGAC 1 cut(s) 192
BsmFI GGGAC 1 cut(s) 192
Bsp1407I TGTACA 1 cut(s) 105
Bsp143I GATC 1 cut(s) 55
BspACI CCGC 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 208
BsrGI TGTACA 1 cut(s) 105
BsrI ACTGG 1 cut(s) 37
BssMI GATC 1 cut(s) 55
Bst4CI ACNGT 1 cut(s) 116
Bst6I CTCTTC 1 cut(s) 183
BstAUI TGTACA 1 cut(s) 105
BstDEI CTNAG 1 cut(s) 123
BstEII GGTNACC 1 cut(s) 172
BstKTI GATC 1 cut(s) 58
BstMBI GATC 1 cut(s) 55
BstPI GGTNACC 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 44
Cfr13I GGNCC 1 cut(s) 206
Csp6I GTAC 1 cut(s) 106
CviAII CATG 2 cut(s) 29, 109
CviJI RGCY 2 cut(s) 25, 71
CviKI_1 RGCY 2 cut(s) 25, 71
CviQI GTAC 1 cut(s) 106
DdeI CTNAG 1 cut(s) 123
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 206
Eco91I GGTNACC 1 cut(s) 172
EcoO109I RGGNCCY 1 cut(s) 206
EcoO65I GGTNACC 1 cut(s) 172
FaeI CATG 2 cut(s) 32, 112
FaiI YATR 5 cut(s) 30, 52, 110, 162, 203
FaqI GGGAC 1 cut(s) 192
FatI CATG 2 cut(s) 28, 108
FbaI TGATCA 1 cut(s) 55
Hin1II CATG 2 cut(s) 32, 112
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 1 cut(s) 46
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 1 cut(s) 45
Hpy8I GTNNAC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4V TGCA 2 cut(s) 87, 201
HpyF3I CTNAG 1 cut(s) 123
Hsp92II CATG 2 cut(s) 32, 112
Ksp22I TGATCA 1 cut(s) 55
Kzo9I GATC 1 cut(s) 55
LpnPI CCDG 3 cut(s) 44, 50, 199
MaeIII GTNAC 2 cut(s) 8, 172
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 1 cut(s) 200
MmeI TCCRAC 1 cut(s) 23
MnlI CCTC 1 cut(s) 163
MseI TTAA 1 cut(s) 180
NdeII GATC 1 cut(s) 55
NlaIII CATG 2 cut(s) 32, 112
NlaIV GGNNCC 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 46
PpuMI RGGWCCY 1 cut(s) 206
Psp5II RGGWCCY 1 cut(s) 206
PspEI GGTNACC 1 cut(s) 172
PspN4I GGNNCC 1 cut(s) 208
PspPI GGNCC 1 cut(s) 206
PspPPI RGGWCCY 1 cut(s) 206
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SaqAI TTAA 1 cut(s) 180
Sau3AI GATC 1 cut(s) 55
Sau96I GGNCC 1 cut(s) 206
SetI ASST 3 cut(s) 27, 174, 208
SgeI CNNG 5 cut(s) 25, 41, 49, 71, 121
SinI GGWCC 1 cut(s) 206
SsiI CCGC 1 cut(s) 76
TaaI ACNGT 1 cut(s) 116
TatI WGTACW 1 cut(s) 105
TfiI GAWTC 1 cut(s) 46
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 1 cut(s) 44
TseFI GTSAC 1 cut(s) 8
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 3 cut(s) 17, 125, 201
TspGWI ACGGA 1 cut(s) 88
TspRI CASTG 1 cut(s) 44
VpaK11BI GGWCC 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.