Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

16681509 .. 16682543

Gene Structure 1035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCATTGCGACGCACCTCTCCTGAGTCACTGCACAGATTTTTGCCACCCTATCTCTTCTCTGGCTGAGCAGCTCAGCTCATTGCGACACACCTCTCCCTCTCCTTCTCCTTCTCCTTCATTTCTTATCCTTCCAATACATTGGTCACAAATATTTCATCTCTCTTTCAAAGGGAAAAGAAAAAAGATGGCCAAATCCACAAGACCTATATTACTCTTACCATTCTTCATAATATTAGTCTTTGCAGCTCATGTTGTACAAGGGTCCAGAACTCAAGTAGCAGAACTTCCACACAGTCAAAGGGTCAACGATTTCTCTACATCACAAGGAGAACAACTTAAAGAGAAGCAAGGAAAGGATGAACTACGTAAGGAGATTGATGATCGATCGTGGATCCACAGCACCAACATGCACATACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0007154 GO:0007267 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010374 GO:0010375 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0033612 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:2000026 GO:2000038 GO:2000123

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stomagen

Protein Analysis

141

Amino Acids

15.95

Weight (kDa)

9.18

Isoelectric Point (pI)

77.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	388, 401
AcoI	YGGCCR	1 cut(s)	189
AfaI	GTAC	1 cut(s)	258
AgsI	TTSAA	1 cut(s)	169
AluBI	AGCT	3 cut(s)	73, 78, 248
AluI	AGCT	3 cut(s)	73, 78, 248
AlwI	GGATC	2 cut(s)	388, 401
AoxI	GGCC	1 cut(s)	189
ApeKI	GCWGC	2 cut(s)	70, 245
AspS9I	GGNCC	1 cut(s)	264
AvaII	GGWCC	1 cut(s)	264
BalI	TGGCCA	1 cut(s)	191
BamHI	GGATCC	1 cut(s)	393
BarI	GAAGNNNNNNTAC	2 cut(s)	270, 302
BbvI	GCAGC	2 cut(s)	82, 257
BccI	CCATC	1 cut(s)	181
BisI	GCNGC	2 cut(s)	71, 246
BlpI	GCTNAGC	2 cut(s)	66, 74
BlsI	GCNGC	2 cut(s)	72, 247
Bme18I	GGWCC	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	264
BmiI	GGNNCC	2 cut(s)	265, 395
Bpu1102I	GCTNAGC	2 cut(s)	66, 74
BpuEI	CTTGAG	1 cut(s)	258
Bsa29I	ATCGAT	1 cut(s)	385
BsaAI	YACGTR	1 cut(s)	368
Bse3DI	GCAATG	2 cut(s)	4, 80
BseCI	ATCGAT	1 cut(s)	385
BseGI	GGATG	1 cut(s)	364
BseMI	GCAATG	2 cut(s)	4, 80
BseMII	CTCAG	3 cut(s)	14, 57, 88
BseXI	GCAGC	2 cut(s)	82, 257
BsgI	GTGCAG	1 cut(s)	16
Bsh1285I	CGRYCG	1 cut(s)	389
BshFI	GGCC	1 cut(s)	191
BshVI	ATCGAT	1 cut(s)	385
BsiEI	CGRYCG	1 cut(s)	389
BsnI	GGCC	1 cut(s)	191
Bsp1407I	TGTACA	1 cut(s)	256
Bsp143I	GATC	3 cut(s)	382, 386, 393
Bsp1720I	GCTNAGC	2 cut(s)	66, 74
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	3 cut(s)	15, 58, 87
BspDI	ATCGAT	1 cut(s)	385
BspLI	GGNNCC	2 cut(s)	265, 395
BspPI	GGATC	2 cut(s)	388, 401
BsrDI	GCAATG	2 cut(s)	4, 80
BsrGI	TGTACA	1 cut(s)	256
BssMI	GATC	3 cut(s)	382, 386, 393
Bst4CI	ACNGT	1 cut(s)	296
Bst6I	CTCTTC	1 cut(s)	61
BstAUI	TGTACA	1 cut(s)	256
BstBAI	YACGTR	1 cut(s)	368
BstDEI	CTNAG	3 cut(s)	23, 66, 74
BstF5I	GGATG	1 cut(s)	364
BstKTI	GATC	3 cut(s)	385, 389, 396
BstMBI	GATC	3 cut(s)	382, 386, 393
BstMCI	CGRYCG	1 cut(s)	389
BstNSI	RCATGY	1 cut(s)	412
BstSNI	TACGTA	1 cut(s)	368
BstV1I	GCAGC	2 cut(s)	82, 257
BstX2I	RGATCY	1 cut(s)	393
BstXI	CCANNNNNNTGG	1 cut(s)	141
BstYI	RGATCY	1 cut(s)	393
Bsu15I	ATCGAT	1 cut(s)	385
BsuRI	GGCC	1 cut(s)	191
BsuTUI	ATCGAT	1 cut(s)	385
BtsCI	GGATG	1 cut(s)	364
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	264
ClaI	ATCGAT	1 cut(s)	385
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	257
CviAII	CATG	2 cut(s)	251, 409
CviJI	RGCY	5 cut(s)	65, 73, 78, 191, 248
CviKI_1	RGCY	5 cut(s)	65, 73, 78, 191, 248
CviQI	GTAC	1 cut(s)	257
DdeI	CTNAG	3 cut(s)	23, 66, 74
DpnI	GATC	3 cut(s)	384, 388, 395
DpnII	GATC	3 cut(s)	382, 386, 393
EaeI	YGGCCR	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
Eco105I	TACGTA	1 cut(s)	368
Eco47I	GGWCC	1 cut(s)	264
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	254, 412
FaiI	YATR	5 cut(s)	209, 230, 252, 410, 416
FatI	CATG	2 cut(s)	250, 408
Fnu4HI	GCNGC	2 cut(s)	71, 246
FokI	GGATG	1 cut(s)	371
Fsp4HI	GCNGC	2 cut(s)	71, 246
GluI	GCNGC	2 cut(s)	71, 246
HaeIII	GGCC	1 cut(s)	191
HgaI	GACGC	1 cut(s)	20
Hin1II	CATG	2 cut(s)	254, 412
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	1 cut(s)	25
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188III	TCNNGA	2 cut(s)	22, 267
Hpy8I	GTNNAC	1 cut(s)	307
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	4 cut(s)	114, 120, 126, 140
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4IV	ACGT	1 cut(s)	367
HpyCH4V	TGCA	4 cut(s)	4, 33, 245, 412
HpyF3I	CTNAG	3 cut(s)	23, 66, 74
HpySE526I	ACGT	1 cut(s)	367
Hsp92II	CATG	2 cut(s)	254, 412
Kzo9I	GATC	3 cut(s)	382, 386, 393
LpnPI	CCDG	3 cut(s)	35, 47, 280
Lsp1109I	GCAGC	2 cut(s)	82, 257
MaeII	ACGT	1 cut(s)	367
MaeIII	GTNAC	2 cut(s)	26, 144
MalI	GATC	3 cut(s)	384, 388, 395
MboI	GATC	3 cut(s)	382, 386, 393
MboII	GAAGA	2 cut(s)	48, 217
MflI	RGATCY	1 cut(s)	393
MlsI	TGGCCA	1 cut(s)	191
MluNI	TGGCCA	1 cut(s)	191
MlyI	GAGTC	1 cut(s)	34
MnlI	CCTC	3 cut(s)	27, 103, 109
Mox20I	TGGCCA	1 cut(s)	191
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	191
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	1 cut(s)	407
Msp20I	TGGCCA	1 cut(s)	191
NdeII	GATC	3 cut(s)	382, 386, 393
NlaIII	CATG	2 cut(s)	254, 412
NlaIV	GGNNCC	2 cut(s)	265, 395
NmuCI	GTSAC	2 cut(s)	26, 144
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	412
PkrI	GCNGC	2 cut(s)	72, 247
Ple19I	CGATCG	1 cut(s)	389
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
Ppu21I	YACGTR	1 cut(s)	368
PspN4I	GGNNCC	2 cut(s)	265, 395
PspPI	GGNCC	1 cut(s)	264
PsuI	RGATCY	1 cut(s)	393
PvuI	CGATCG	1 cut(s)	389
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
RseI	CAYNNNNRTG	1 cut(s)	407
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	2 cut(s)	71, 246
Sau3AI	GATC	3 cut(s)	382, 386, 393
Sau96I	GGNCC	1 cut(s)	264
SchI	GAGTC	1 cut(s)	34
SetI	ASST	7 cut(s)	19, 75, 80, 95, 208, 250, 370
SinI	GGWCC	1 cut(s)	264
SmiMI	CAYNNNNRTG	1 cut(s)	407
SmlI	CTYRAG	1 cut(s)	273
SmoI	CTYRAG	1 cut(s)	273
SnaBI	TACGTA	1 cut(s)	368
SspI	AATATT	2 cut(s)	153, 234
TaaI	ACNGT	1 cut(s)	296
TaiI	ACGT	1 cut(s)	370
TaqI	TCGA	1 cut(s)	385
TatI	WGTACW	1 cut(s)	256
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	35
TseFI	GTSAC	2 cut(s)	26, 144
TseI	GCWGC	2 cut(s)	70, 245
Tsp45I	GTSAC	2 cut(s)	26, 144
TspDTI	ATGAA	4 cut(s)	108, 146, 217, 375
TspRI	CASTG	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	264
XceI	RCATGY	1 cut(s)	412
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.