Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

17155250 .. 17156861

Gene Structure 1612 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGCAAGCACAATCCCCCTTCAAAACGAATCGATCGGGCGTGCGGAAGTCCCACCCGATTTACGATGGGGAGGAGGAGGAGCTCGCCGGTGAACGTGCTGTTTCAATGGGTGAGGAGTCAGTCAATGAAAGTCAAGGTTTTTCTGGAATCATAACTACTTTGTCATTGCCTCTGAAGCCGTGCATGTCGCCGGGATCGTCGTCCTCATTTACAAGCTCACTACCCAGAAGACTTGCTCCGGAACTCACAGCTCTCTTTCTAGCAGTAAGATTATTTTGTGGTACCATGATGGAGGCGGACATTCATACTGTGCTCGATTTTTCTACTCTCGTTTCAACAGCGTGGGTCATATACATGATACGGTCTAAATTGAAGTCAACCTACATCAAGGAACTCGACAATTTTCGCTTATATTTTGTGGTAAATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05110 map05110

Pfam Domains

Protein Families

ER_lumen_recept

Protein Analysis

144

Amino Acids

15.91

Weight (kDa)

6.11

Isoelectric Point (pI)

52.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ER_lumen_recept	PF00810	81 - 141	1.7e-07	ER lumen protein retaining receptor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	281
AccB1I	GGYRCC	1 cut(s)	281
AccIII	TCCGGA	1 cut(s)	238
AciI	CCGC	2 cut(s)	43, 296
AclWI	GGATC	1 cut(s)	202
AcuI	CTGAAG	1 cut(s)	194
AfaI	GTAC	1 cut(s)	283
AgsI	TTSAA	4 cut(s)	22, 105, 336, 373
AluBI	AGCT	3 cut(s)	82, 216, 251
AluI	AGCT	3 cut(s)	82, 216, 251
Alw21I	GWGCWC	2 cut(s)	84, 315
AlwI	GGATC	1 cut(s)	202
Aor13HI	TCCGGA	1 cut(s)	238
Asp718I	GGTACC	1 cut(s)	281
AsuC2I	CCSGG	1 cut(s)	192
AsuHPI	GGTGA	2 cut(s)	101, 122
BanI	GGYRCC	1 cut(s)	281
BanII	GRGCYC	1 cut(s)	84
BarI	GAAGNNNNNNTAC	2 cut(s)	365, 397
BbsI	GAAGAC	1 cut(s)	235
Bbv12I	GWGCWC	2 cut(s)	84, 315
BccI	CCATC	2 cut(s)	59, 283
BceAI	ACGGC	1 cut(s)	163
BcnI	CCSGG	1 cut(s)	192
BfaI	CTAG	1 cut(s)	260
Bme1390I	CCNGG	1 cut(s)	192
BmiI	GGNNCC	1 cut(s)	283
BmrFI	CCNGG	1 cut(s)	192
BpiI	GAAGAC	1 cut(s)	235
BpuMI	CCSGG	1 cut(s)	192
Bsa29I	ATCGAT	1 cut(s)	31
BsaWI	WCCGGW	1 cut(s)	238
Bse118I	RCCGGY	1 cut(s)	86
Bse3DI	GCAATG	1 cut(s)	164
BseAI	TCCGGA	1 cut(s)	238
BseCI	ATCGAT	1 cut(s)	31
BseMI	GCAATG	1 cut(s)	164
BseRI	GAGGAG	4 cut(s)	86, 89, 92, 128
Bsh1285I	CGRYCG	1 cut(s)	35
BshNI	GGYRCC	1 cut(s)	281
BshVI	ATCGAT	1 cut(s)	31
BsiEI	CGRYCG	1 cut(s)	35
BsiHKAI	GWGCWC	2 cut(s)	84, 315
BsiSI	CCGG	3 cut(s)	87, 191, 239
BslFI	GGGAC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	34
Bsp1286I	GDGCHC	2 cut(s)	84, 315
Bsp13I	TCCGGA	1 cut(s)	238
Bsp143I	GATC	2 cut(s)	32, 194
BspACI	CCGC	2 cut(s)	43, 296
BspDI	ATCGAT	1 cut(s)	31
BspEI	TCCGGA	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	283
BspPI	GGATC	1 cut(s)	202
BspT107I	GGYRCC	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	164
BsrFI	RCCGGY	1 cut(s)	86
BssAI	RCCGGY	1 cut(s)	86
BssMI	GATC	2 cut(s)	32, 194
Bst4CI	ACNGT	2 cut(s)	310, 363
BstC8I	GCNNGC	3 cut(s)	6, 41, 84
BstKTI	GATC	2 cut(s)	35, 197
BstMBI	GATC	2 cut(s)	32, 194
BstMCI	CGRYCG	1 cut(s)	35
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstNSI	RCATGY	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	190
BstV2I	GAAGAC	1 cut(s)	235
Bsu15I	ATCGAT	1 cut(s)	31
BsuTUI	ATCGAT	1 cut(s)	31
Cac8I	GCNNGC	3 cut(s)	6, 41, 84
Cfr10I	RCCGGY	1 cut(s)	86
ClaI	ATCGAT	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	282
CviAII	CATG	3 cut(s)	184, 286, 355
CviJI	RGCY	4 cut(s)	82, 178, 216, 251
CviKI_1	RGCY	4 cut(s)	82, 178, 216, 251
CviQI	GTAC	1 cut(s)	282
DpnI	GATC	2 cut(s)	34, 196
DpnII	GATC	2 cut(s)	32, 194
EciI	GGCGGA	1 cut(s)	311
Ecl136II	GAGCTC	1 cut(s)	82
Eco24I	GRGCYC	1 cut(s)	84
Eco53kI	GAGCTC	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	194
EcoICRI	GAGCTC	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	84
FaeI	CATG	3 cut(s)	187, 289, 358
FaiI	YATR	8 cut(s)	152, 185, 287, 306, 350, 352, 356, 412
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	3 cut(s)	183, 285, 354
FriOI	GRGCYC	1 cut(s)	84
FspBI	CTAG	1 cut(s)	260
HapII	CCGG	3 cut(s)	87, 191, 239
Hin1II	CATG	3 cut(s)	187, 289, 358
HincII	GTYRAC	1 cut(s)	378
HindII	GTYRAC	1 cut(s)	378
HinfI	GANTC	3 cut(s)	28, 116, 147
HpaII	CCGG	3 cut(s)	87, 191, 239
HphI	GGTGA	2 cut(s)	101, 122
Hpy166II	GTNNAC	2 cut(s)	92, 378
Hpy188I	TCNGA	1 cut(s)	174
Hpy188III	TCNNGA	2 cut(s)	144, 239
Hpy8I	GTNNAC	2 cut(s)	92, 378
Hpy99I	CGWCG	1 cut(s)	202
HpyAV	CCTTC	1 cut(s)	28
HpyCH4III	ACNGT	2 cut(s)	310, 363
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	2 cut(s)	4, 183
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HpySE526I	ACGT	1 cut(s)	94
Hsp92II	CATG	3 cut(s)	187, 289, 358
Kpn2I	TCCGGA	1 cut(s)	238
KpnI	GGTACC	1 cut(s)	285
Kzo9I	GATC	2 cut(s)	32, 194
LmnI	GCTCC	2 cut(s)	79, 241
LpnPI	CCDG	5 cut(s)	100, 129, 204, 238, 252
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	1 cut(s)	94
MalI	GATC	2 cut(s)	34, 196
MboI	GATC	2 cut(s)	32, 194
MboII	GAAGA	1 cut(s)	240
MhlI	GDGCHC	2 cut(s)	84, 315
MluCI	AATT	2 cut(s)	368, 400
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	7 cut(s)	64, 67, 70, 106, 180, 214, 286
MroI	TCCGGA	1 cut(s)	238
MseI	TTAA	1 cut(s)	430
MslI	CAYNNNNRTG	1 cut(s)	353
MspI	CCGG	3 cut(s)	87, 191, 239
MspR9I	CCNGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	175
NciI	CCSGG	1 cut(s)	192
NdeII	GATC	2 cut(s)	32, 194
NlaIII	CATG	3 cut(s)	187, 289, 358
NlaIV	GGNNCC	1 cut(s)	283
NspI	RCATGY	1 cut(s)	187
PcsI	WCGNNNNNNNCGW	1 cut(s)	194
PfeI	GAWTC	2 cut(s)	28, 147
Ple19I	CGATCG	1 cut(s)	35
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Psp124BI	GAGCTC	1 cut(s)	84
PspN4I	GGNNCC	1 cut(s)	283
PvuI	CGATCG	1 cut(s)	35
RsaI	GTAC	1 cut(s)	283
RsaNI	GTAC	1 cut(s)	282
RseI	CAYNNNNRTG	1 cut(s)	353
SacI	GAGCTC	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	430
Sau3AI	GATC	2 cut(s)	32, 194
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	192
SduI	GDGCHC	2 cut(s)	84, 315
SetI	ASST	6 cut(s)	84, 97, 139, 218, 253, 383
SgrAI	CRCCGGYG	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	353
Sse9I	AATT	2 cut(s)	368, 400
SsiI	CCGC	2 cut(s)	43, 296
SspMI	CTAG	1 cut(s)	260
SstI	GAGCTC	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	190
TaaI	ACNGT	2 cut(s)	310, 363
TaiI	ACGT	1 cut(s)	97
TaqI	TCGA	3 cut(s)	31, 315, 396
TasI	AATT	2 cut(s)	368, 400
TfiI	GAWTC	2 cut(s)	28, 147
Tru1I	TTAA	1 cut(s)	430
Tru9I	TTAA	1 cut(s)	430
TspDTI	ATGAA	2 cut(s)	141, 293
XceI	RCATGY	1 cut(s)	187
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.