Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

17495000 .. 17496274

Gene Structure 1275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGCATGGATGTAGCTCAGGATCTGATCTCCTAGTAAATGCAGAGGTTGATTCCATGGGTGGGGTGGTTGACAGTGGAGTTGGTATTGGTTTGAAAACCTCTCCACGCCGAGCAGCAATTGAGAAGGCCCAAGCAGAGCTTAGGCAGGAGTATGATGTGAGGGAGGAAAGAAGAAGGGAGCTAGAATTTCTTGAGAAAGGTGGCAATCCTTTGGACTTCAAGATTGGGAATGGAGCTTCTGTTAGTGTCCAGTCTACTTCACTCACTGATCAGCATCCAGAGCAGTTTGTAACCAGTGAAGCAAAAGGTAGTTTTGCATTGACTGCATCACCACATGGGGACTCTGTTGAAAGTAGCGGTCGACCAGAGGTTCCTACACTTTGTGAACCCAATAGCGCTGATAATCTCTTACTATTTGATGGCGGCAGTGATGCTCCTGAAGGGGAAATGAATTCTGTGCGTCTTAGTAGAAGGAATAACAGAGGTCCATCAGAACAGTTTTCCCAGATGGATGGGACTCAAAACCCCAAGGAATCAGAAGACTCGACTATGTTCCGTCCATATGCTCGAAGGAACAGGTCTAGACCAAATCATGATGGCCCTCGATCAAATTCAGTAGATATACAGGGTCGTGGTGTTCAGGGATCTTCTTTACCTGCCCGTGGGGTGTCAAAGGATCCTAAGAGGCCGATATCTGAAACAAACAACCAAAGGGACCAGAATATACCTTCTGGTGCTAACCTAAAGTATGCGAGTTCAAATGGTGATATTCTTCCCAAGATTGTAACTTCTGATAATCAGTTCGATATGGCCTTGGAGGGGGTGCAAACCCCCGACGTAATTACTAGTCCAATGAAAGATGGATCTCAAAACAAATTGGATGTTACACCTCTTAAAAGTTTGAGGGATAGCCAGCGTAGTGAACCATCTCAGATTGATGCTCAGGAAACCCCCATTGATGTTGTTTCTGAGATCGATCTGATGTTGCAGAAGGGAAACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0016604 GO:0016607 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0035267 GO:0036211 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071704 GO:0071840 GO:0097346 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1904949 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSA Myb_DNA-bind_6

Protein Analysis

335

Amino Acids

36.21

Weight (kDa)

4.97

Isoelectric Point (pI)

56.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	664
AccI	GTMKAC	2 cut(s)	254, 361
AciI	CCGC	2 cut(s)	357, 423
AclWI	GGATC	5 cut(s)	28, 652, 671, 684, 871
AcsI	RAATTY	3 cut(s)	185, 451, 610
AcuI	CTGAAG	1 cut(s)	459
AdeI	CACNNNGTG	1 cut(s)	383
AfeI	AGCGCT	1 cut(s)	397
AfiI	CCNNNNNNNGG	3 cut(s)	60, 662, 819
AgsI	TTSAA	4 cut(s)	94, 220, 350, 759
AhlI	ACTAGT	1 cut(s)	845
AluBI	AGCT	4 cut(s)	15, 139, 181, 236
AluI	AGCT	4 cut(s)	15, 139, 181, 236
AlwI	GGATC	5 cut(s)	28, 652, 671, 684, 871
AlwNI	CAGNNNCTG	1 cut(s)	23
Aor51HI	AGCGCT	1 cut(s)	397
AoxI	GGCC	4 cut(s)	126, 598, 686, 810
ApeKI	GCWGC	1 cut(s)	113
ApoI	RAATTY	3 cut(s)	185, 451, 610
AspLEI	GCGC	1 cut(s)	398
AspS9I	GGNCC	4 cut(s)	127, 485, 599, 715
AsuHPI	GGTGA	2 cut(s)	321, 776
AvaII	GGWCC	2 cut(s)	485, 715
BamHI	GGATCC	1 cut(s)	676
BarI	GAAGNNNNNNTAC	1 cut(s)	983
BbsI	GAAGAC	1 cut(s)	546
BbvI	GCAGC	1 cut(s)	125
BccI	CCATC	7 cut(s)	413, 496, 502, 506, 590, 854, 934
BclI	TGATCA	1 cut(s)	268
BcuI	ACTAGT	1 cut(s)	845
BfaI	CTAG	5 cut(s)	32, 182, 582, 846, 1003
BfoI	RGCGCY	1 cut(s)	399
BfuAI	ACCTGC	1 cut(s)	664
BisI	GCNGC	2 cut(s)	114, 424
BlsI	GCNGC	2 cut(s)	115, 425
Bme18I	GGWCC	2 cut(s)	485, 715
BmgT120I	GGNCC	4 cut(s)	127, 485, 599, 715
BmiI	GGNNCC	3 cut(s)	372, 678, 716
BmsI	GCATC	4 cut(s)	283, 335, 421, 928
BpiI	GAAGAC	1 cut(s)	546
Bpu10I	CCTNAGC	3 cut(s)	16, 140, 942
BpuEI	CTTGAG	1 cut(s)	212
Bsa29I	ATCGAT	1 cut(s)	975
BsaBI	GATNNNNATC	1 cut(s)	273
BsaJI	CCNNGG	4 cut(s)	54, 528, 661, 813
BsaXI	ACNNNNNCTCC	2 cut(s)	225, 255
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 662, 819
Bse1I	ACTGG	2 cut(s)	250, 294
Bse8I	GATNNNNATC	1 cut(s)	273
BseCI	ATCGAT	1 cut(s)	975
BseDI	CCNNGG	4 cut(s)	54, 528, 661, 813
BseGI	GGATG	4 cut(s)	14, 274, 517, 886
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	3 cut(s)	60, 662, 819
BseMII	CTCAG	4 cut(s)	30, 944, 956, 960
BseNI	ACTGG	2 cut(s)	250, 294
BseXI	GCAGC	1 cut(s)	125
Bsh1285I	CGRYCG	1 cut(s)	361
BshFI	GGCC	4 cut(s)	128, 600, 688, 812
BshVI	ATCGAT	1 cut(s)	975
BsiEI	CGRYCG	1 cut(s)	361
BslFI	GGGAC	3 cut(s)	353, 529, 728
BslI	CCNNNNNNNGG	3 cut(s)	60, 662, 819
BsmFI	GGGAC	3 cut(s)	353, 529, 728
BsnI	GGCC	4 cut(s)	128, 600, 688, 812
Bsp143I	GATC	9 cut(s)	20, 25, 268, 605, 644, 676, 863, 972, 976
Bsp19I	CCATGG	1 cut(s)	54
BspACI	CCGC	2 cut(s)	357, 423
BspANI	GGCC	4 cut(s)	128, 600, 688, 812
BspCNI	CTCAG	4 cut(s)	29, 943, 955, 961
BspDI	ATCGAT	1 cut(s)	975
BspHI	TCATGA	1 cut(s)	592
BspLI	GGNNCC	3 cut(s)	372, 678, 716
BspMI	ACCTGC	1 cut(s)	664
BspPI	GGATC	5 cut(s)	28, 652, 671, 684, 871
BsrI	ACTGG	2 cut(s)	250, 294
BssECI	CCNNGG	4 cut(s)	54, 528, 661, 813
BssMI	GATC	9 cut(s)	20, 25, 268, 605, 644, 676, 863, 972, 976
BssT1I	CCWWGG	3 cut(s)	54, 528, 813
Bst4CI	ACNGT	2 cut(s)	74, 498
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstC8I	GCNNGC	1 cut(s)	914
BstDEI	CTNAG	7 cut(s)	16, 140, 464, 681, 930, 942, 969
BstDSI	CCRYGG	2 cut(s)	54, 661
BstF5I	GGATG	4 cut(s)	14, 274, 517, 886
BstH2I	RGCGCY	1 cut(s)	399
BstHHI	GCGC	1 cut(s)	398
BstKTI	GATC	9 cut(s)	23, 28, 271, 608, 647, 679, 866, 975, 979
BstMBI	GATC	9 cut(s)	20, 25, 268, 605, 644, 676, 863, 972, 976
BstMCI	CGRYCG	1 cut(s)	361
BstMWI	GCNNNNNNNGC	2 cut(s)	280, 323
BstV1I	GCAGC	1 cut(s)	125
BstV2I	GAAGAC	1 cut(s)	546
BstX2I	RGATCY	4 cut(s)	20, 644, 676, 863
BstXI	CCANNNNNNTGG	1 cut(s)	512
BstYI	RGATCY	4 cut(s)	20, 644, 676, 863
Bsu15I	ATCGAT	1 cut(s)	975
BsuRI	GGCC	4 cut(s)	128, 600, 688, 812
BsuTUI	ATCGAT	1 cut(s)	975
BtgI	CCRYGG	2 cut(s)	54, 661
BtsCI	GGATG	4 cut(s)	14, 274, 517, 886
BtsI	GCAGTG	1 cut(s)	433
BtsIMutI	CAGTG	4 cut(s)	79, 264, 301, 433
BveI	ACCTGC	1 cut(s)	664
Cac8I	GCNNGC	1 cut(s)	914
CaiI	CAGNNNCTG	1 cut(s)	23
CciI	TCATGA	1 cut(s)	592
CfoI	GCGC	1 cut(s)	398
Cfr13I	GGNCC	4 cut(s)	127, 485, 599, 715
ClaI	ATCGAT	1 cut(s)	975
CseI	GACGC	1 cut(s)	449
CviAII	CATG	4 cut(s)	5, 55, 335, 593
CviJI	RGCY	9 cut(s)	15, 128, 139, 181, 236, 600, 688, 812, 912
CviKI_1	RGCY	9 cut(s)	15, 128, 139, 181, 236, 600, 688, 812, 912
DdeI	CTNAG	7 cut(s)	16, 140, 464, 681, 930, 942, 969
DpnI	GATC	9 cut(s)	22, 27, 270, 607, 646, 678, 865, 974, 978
DpnII	GATC	9 cut(s)	20, 25, 268, 605, 644, 676, 863, 972, 976
DraIII	CACNNNGTG	1 cut(s)	383
Eco130I	CCWWGG	3 cut(s)	54, 528, 813
Eco32I	GATATC	1 cut(s)	693
Eco47I	GGWCC	2 cut(s)	485, 715
Eco47III	AGCGCT	1 cut(s)	397
Eco57I	CTGAAG	1 cut(s)	459
EcoRI	GAATTC	1 cut(s)	451
EcoRV	GATATC	1 cut(s)	693
EcoT14I	CCWWGG	3 cut(s)	54, 528, 813
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	3 cut(s)	54, 528, 813
FaeI	CATG	4 cut(s)	8, 58, 338, 596
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FaqI	GGGAC	3 cut(s)	353, 529, 728
FatI	CATG	4 cut(s)	4, 54, 334, 592
FauNDI	CATATG	1 cut(s)	562
FbaI	TGATCA	1 cut(s)	268
FblI	GTMKAC	2 cut(s)	254, 361
Fnu4HI	GCNGC	2 cut(s)	114, 424
FokI	GGATG	4 cut(s)	21, 261, 524, 893
Fsp4HI	GCNGC	2 cut(s)	114, 424
FspBI	CTAG	5 cut(s)	32, 182, 582, 846, 1003
GlaI	GCGC	1 cut(s)	397
GluI	GCNGC	2 cut(s)	114, 424
HaeII	RGCGCY	1 cut(s)	399
HaeIII	GGCC	4 cut(s)	128, 600, 688, 812
HgaI	GACGC	1 cut(s)	449
HhaI	GCGC	1 cut(s)	398
Hin1II	CATG	4 cut(s)	8, 58, 338, 596
Hin6I	GCGC	1 cut(s)	396
HinP1I	GCGC	1 cut(s)	396
HincII	GTYRAC	2 cut(s)	70, 362
HindII	GTYRAC	2 cut(s)	70, 362
HinfI	GANTC	5 cut(s)	50, 341, 517, 533, 542
HphI	GGTGA	2 cut(s)	321, 776
Hpy166II	GTNNAC	5 cut(s)	70, 255, 362, 386, 923
Hpy188I	TCNGA	8 cut(s)	25, 493, 538, 697, 793, 933, 970, 981
Hpy188III	TCNNGA	8 cut(s)	18, 191, 220, 278, 437, 582, 593, 944
Hpy8I	GTNNAC	5 cut(s)	70, 255, 362, 386, 923
Hpy99I	CGWCG	1 cut(s)	839
HpyAV	CCTTC	7 cut(s)	118, 168, 434, 465, 564, 738, 985
HpyCH4III	ACNGT	2 cut(s)	74, 498
HpyCH4IV	ACGT	1 cut(s)	837
HpyCH4V	TGCA	6 cut(s)	4, 41, 317, 326, 826, 988
HpyF10VI	GCNNNNNNNGC	2 cut(s)	280, 323
HpyF3I	CTNAG	7 cut(s)	16, 140, 464, 681, 930, 942, 969
HpySE526I	ACGT	1 cut(s)	837
Hsp92II	CATG	4 cut(s)	8, 58, 338, 596
HspAI	GCGC	1 cut(s)	396
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	9 cut(s)	20, 25, 268, 605, 644, 676, 863, 972, 976
LmnI	GCTCC	3 cut(s)	178, 233, 439
Lsp1109I	GCAGC	1 cut(s)	125
LweI	GCATC	4 cut(s)	283, 335, 421, 928
MaeI	CTAG	5 cut(s)	32, 182, 582, 846, 1003
MaeII	ACGT	1 cut(s)	837
MaeIII	GTNAC	3 cut(s)	289, 784, 883
MalI	GATC	9 cut(s)	22, 27, 270, 607, 646, 678, 865, 974, 978
MboI	GATC	9 cut(s)	20, 25, 268, 605, 644, 676, 863, 972, 976
MboII	GAAGA	4 cut(s)	183, 551, 639, 764
MfeI	CAATTG	1 cut(s)	117
MflI	RGATCY	4 cut(s)	20, 644, 676, 863
MluCI	AATT	6 cut(s)	117, 185, 451, 610, 840, 875
MlyI	GAGTC	3 cut(s)	335, 511, 536
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	894
MunI	CAATTG	1 cut(s)	117
MwoI	GCNNNNNNNGC	2 cut(s)	280, 323
NcoI	CCATGG	1 cut(s)	54
NdeI	CATATG	1 cut(s)	562
NdeII	GATC	9 cut(s)	20, 25, 268, 605, 644, 676, 863, 972, 976
NlaIII	CATG	4 cut(s)	8, 58, 338, 596
NlaIV	GGNNCC	3 cut(s)	372, 678, 716
NmeAIII	GCCGAG	1 cut(s)	134
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	592
PfeI	GAWTC	2 cut(s)	50, 533
PkrI	GCNGC	2 cut(s)	115, 425
PleI	GAGTC	3 cut(s)	335, 511, 536
PpsI	GAGTC	3 cut(s)	335, 511, 536
PspN4I	GGNNCC	3 cut(s)	372, 678, 716
PspPI	GGNCC	4 cut(s)	127, 485, 599, 715
PstNI	CAGNNNCTG	1 cut(s)	23
PsuI	RGATCY	4 cut(s)	20, 644, 676, 863
SalI	GTCGAC	1 cut(s)	360
SaqAI	TTAA	1 cut(s)	894
SatI	GCNGC	2 cut(s)	114, 424
Sau3AI	GATC	9 cut(s)	20, 25, 268, 605, 644, 676, 863, 972, 976
Sau96I	GGNCC	4 cut(s)	127, 485, 599, 715
SchI	GAGTC	3 cut(s)	335, 511, 536
SfaNI	GCATC	4 cut(s)	283, 335, 421, 928
SinI	GGWCC	2 cut(s)	485, 715
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
SpeI	ACTAGT	1 cut(s)	845
Sse9I	AATT	6 cut(s)	117, 185, 451, 610, 840, 875
SsiI	CCGC	2 cut(s)	357, 423
SspMI	CTAG	5 cut(s)	32, 182, 582, 846, 1003
StyI	CCWWGG	3 cut(s)	54, 528, 813
TaaI	ACNGT	2 cut(s)	74, 498
TaiI	ACGT	1 cut(s)	840
TaqI	TCGA	6 cut(s)	361, 545, 568, 604, 804, 975
TasI	AATT	6 cut(s)	117, 185, 451, 610, 840, 875
TauI	GCSGC	1 cut(s)	426
TfiI	GAWTC	2 cut(s)	50, 533
Tru1I	TTAA	1 cut(s)	894
Tru9I	TTAA	1 cut(s)	894
TscAI	CASTG	4 cut(s)	79, 271, 301, 433
TseI	GCWGC	1 cut(s)	113
TspDTI	ATGAA	2 cut(s)	464, 869
TspGWI	ACGGA	1 cut(s)	545
TspRI	CASTG	4 cut(s)	79, 271, 301, 433
VpaK11BI	GGWCC	2 cut(s)	485, 715
XapI	RAATTY	3 cut(s)	185, 451, 610
XbaI	TCTAGA	1 cut(s)	581
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XmiI	GTMKAC	2 cut(s)	254, 361
XspI	CTAG	5 cut(s)	32, 182, 582, 846, 1003
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.