Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

18862580 .. 18863438

Gene Structure 859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCTCCCAATCCCAAGGATCCGAAGCAAAGCGGAGGTTTCTTCGCCTCCATGGCTTCCACTTTGACTAATCTCAGTAGCGCCATGACCAAATCCGTCAACGGCATAATGGGTTATGAGGGGCTGGAGGTTATCAATCCAGATGGAGGGCAGGACGATCTCGAAGACGAAGCAAGGAAAGGAAGATGGAAGCAGGAGGTACACTACGTTTCTGCCATGGCAGTACCATTTGCATACTTGATAGAGATAAAATGCTACTGTCTTGGATTTTTTCTTATATATATGTTAGGGCTGCAGAAATATTATATTTGCATTTTGAGCACGAAGGTCTGCCTCCATAGCTTTTTTTTCATGGCCTTTGAAGCAGCGTTATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0008150 GO:0008289 GO:0009566 GO:0009567 GO:0012505 GO:0019953 GO:0022414 GO:0032934 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0051704 GO:0097159

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04151 ko04152 ko04261 ko04390 ko04391 ko04530 ko04728 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04151 map04152 map04261 map04390 map04391 map04530 map04728 map05142 map05160 map05165

Pfam Domains

Protein Families

Oxysterol_BP

Protein Analysis

126

Amino Acids

13.92

Weight (kDa)

5.59

Isoelectric Point (pI)

51.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	33
AclWI	GGATC	2 cut(s)	14, 27
AfaI	GTAC	2 cut(s)	201, 225
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	1 cut(s)	362
AluBI	AGCT	1 cut(s)	342
AluI	AGCT	1 cut(s)	342
Alw21I	GWGCWC	1 cut(s)	323
AlwI	GGATC	2 cut(s)	14, 27
AoxI	GGCC	1 cut(s)	354
ApeKI	GCWGC	2 cut(s)	292, 365
AspLEI	GCGC	1 cut(s)	83
BamHI	GGATCC	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	323
BbvI	GCAGC	1 cut(s)	279
BccI	CCATC	2 cut(s)	137, 180
BceAI	ACGGC	1 cut(s)	118
BfmI	CTRYAG	1 cut(s)	293
BfoI	RGCGCY	1 cut(s)	84
BglI	GCCNNNNNGGC	1 cut(s)	53
BisI	GCNGC	2 cut(s)	293, 366
BlsI	GCNGC	2 cut(s)	294, 367
BmiI	GGNNCC	2 cut(s)	6, 21
BpiI	GAAGAC	1 cut(s)	171
BpmI	CTGGAG	1 cut(s)	146
BsaJI	CCNNGG	3 cut(s)	15, 51, 216
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
BseDI	CCNNGG	3 cut(s)	15, 51, 216
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMII	CTCAG	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	279
BshFI	GGCC	1 cut(s)	356
BsiHKAI	GWGCWC	1 cut(s)	323
BslI	CCNNNNNNNGG	1 cut(s)	146
BsnI	GGCC	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp143I	GATC	2 cut(s)	19, 157
Bsp19I	CCATGG	2 cut(s)	51, 216
BspACI	CCGC	1 cut(s)	33
BspANI	GGCC	1 cut(s)	356
BspCNI	CTCAG	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	6, 21
BspMAI	CTGCAG	1 cut(s)	297
BspPI	GGATC	2 cut(s)	14, 27
BssECI	CCNNGG	3 cut(s)	15, 51, 216
BssMI	GATC	2 cut(s)	19, 157
BssT1I	CCWWGG	3 cut(s)	15, 51, 216
Bst4CI	ACNGT	1 cut(s)	260
BstDEI	CTNAG	1 cut(s)	74
BstDSI	CCRYGG	2 cut(s)	51, 216
BstH2I	RGCGCY	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	2 cut(s)	22, 160
BstMBI	GATC	2 cut(s)	19, 157
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 318, 339, 362
BstSFI	CTRYAG	1 cut(s)	293
BstV1I	GCAGC	1 cut(s)	279
BstV2I	GAAGAC	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BsuRI	GGCC	1 cut(s)	356
BtgI	CCRYGG	2 cut(s)	51, 216
CfoI	GCGC	1 cut(s)	83
Csp6I	GTAC	2 cut(s)	200, 224
CviAII	CATG	4 cut(s)	52, 85, 217, 352
CviJI	RGCY	6 cut(s)	5, 56, 124, 292, 342, 356
CviKI_1	RGCY	6 cut(s)	5, 56, 124, 292, 342, 356
CviQI	GTAC	2 cut(s)	200, 224
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	2 cut(s)	21, 159
DpnII	GATC	2 cut(s)	19, 157
Eco130I	CCWWGG	3 cut(s)	15, 51, 216
EcoT14I	CCWWGG	3 cut(s)	15, 51, 216
ErhI	CCWWGG	3 cut(s)	15, 51, 216
FaeI	CATG	4 cut(s)	55, 88, 220, 355
FatI	CATG	4 cut(s)	51, 84, 216, 351
Fnu4HI	GCNGC	2 cut(s)	293, 366
Fsp4HI	GCNGC	2 cut(s)	293, 366
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	2 cut(s)	293, 366
GsuI	CTGGAG	1 cut(s)	146
HaeII	RGCGCY	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	356
HhaI	GCGC	1 cut(s)	83
Hin1II	CATG	4 cut(s)	55, 88, 220, 355
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
Hpy166II	GTNNAC	2 cut(s)	100, 202
Hpy188I	TCNGA	1 cut(s)	24
Hpy188III	TCNNGA	2 cut(s)	140, 161
Hpy8I	GTNNAC	2 cut(s)	100, 202
HpyAV	CCTTC	1 cut(s)	319
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	3 cut(s)	233, 295, 312
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 318, 339, 362
HpyF3I	CTNAG	1 cut(s)	74
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	4 cut(s)	55, 88, 220, 355
HspAI	GCGC	1 cut(s)	81
Kzo9I	GATC	2 cut(s)	19, 157
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	4 cut(s)	110, 137, 153, 179
Lsp1109I	GCAGC	1 cut(s)	279
MaeII	ACGT	1 cut(s)	207
MalI	GATC	2 cut(s)	21, 159
MboI	GATC	2 cut(s)	19, 157
MboII	GAAGA	3 cut(s)	34, 176, 195
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	323
MnlI	CCTC	7 cut(s)	29, 58, 112, 121, 140, 190, 344
MwoI	GCNNNNNNNGC	4 cut(s)	53, 318, 339, 362
NcoI	CCATGG	2 cut(s)	51, 216
NdeII	GATC	2 cut(s)	19, 157
NlaIII	CATG	4 cut(s)	55, 88, 220, 355
NlaIV	GGNNCC	2 cut(s)	6, 21
PkrI	GCNGC	2 cut(s)	294, 367
PspN4I	GGNNCC	2 cut(s)	6, 21
PstI	CTGCAG	1 cut(s)	297
PsuI	RGATCY	1 cut(s)	19
RsaI	GTAC	2 cut(s)	201, 225
RsaNI	GTAC	2 cut(s)	200, 224
SatI	GCNGC	2 cut(s)	293, 366
Sau3AI	GATC	2 cut(s)	19, 157
SduI	GDGCHC	1 cut(s)	323
SetI	ASST	6 cut(s)	40, 132, 201, 210, 330, 344
SfcI	CTRYAG	1 cut(s)	293
SsiI	CCGC	1 cut(s)	33
SspI	AATATT	1 cut(s)	302
StyI	CCWWGG	3 cut(s)	15, 51, 216
TaaI	ACNGT	1 cut(s)	260
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	1 cut(s)	162
TseI	GCWGC	2 cut(s)	292, 365
TspDTI	ATGAA	1 cut(s)	340
TspGWI	ACGGA	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.