Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

19131378 .. 19131872

Gene Structure 495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCATGGCGATTGTTGGCAAATTGGCAGGGCAAGTGGTCTTCGGCTGGCTTGGTGACAAAATGGGAGAAAAAAGTGTATGGCATGACTCTTATGCTCATGATCATATGCTCCATTGGTTCCGCGCTCTCCTTTGGGCACAACGCGAAGGCTGCAATGACCAACGCGAAGGCTGCAATGACCACGGTTTGTTTCTTCCATTTCTGGCTAGGGTTTGGCATTGGTGATGACTACCCTCTTTCCGCCACCATAATGTCTGAATACGCAAATAAAAAGACTCGTGGTGCCTTTGTTGCCGCGGTGTTTGGCATGCAGGGGTTTGGAATTCTAGCAGGGGGGTTGTTTGCAATGCTCATCTCTGCGATTTTCAAGGCCAAGTTCAACGCTCCAGCTTATGAAGTTGATCCAGTTGGTTCAACTGTCCCAGAAGCAGACAACCCTTGGAGAATCATTCTAATGGTTGGAGCACTTCCGGCCGCTCTAACTTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005315 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0012505 GO:0015075 GO:0015291 GO:0015318 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0033993 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0097305 GO:0098656 GO:1901683 GO:1901684 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

165

Amino Acids

17.77

Weight (kDa)

9.3

Isoelectric Point (pI)

21.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	30 - 161	4e-09	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	284
AccBSI	CCGCTC	1 cut(s)	479
AccII	CGCG	4 cut(s)	125, 146, 167, 299
AciI	CCGC	5 cut(s)	123, 243, 297, 299, 477
AclWI	GGATC	1 cut(s)	398
AcoI	YGGCCR	1 cut(s)	474
AcsI	RAATTY	1 cut(s)	324
AgsI	TTSAA	3 cut(s)	370, 382, 417
AluBI	AGCT	1 cut(s)	392
AluI	AGCT	1 cut(s)	392
Alw21I	GWGCWC	1 cut(s)	469
AlwI	GGATC	1 cut(s)	398
AoxI	GGCC	2 cut(s)	372, 474
ApeKI	GCWGC	2 cut(s)	152, 173
ApoI	RAATTY	1 cut(s)	324
AspLEI	GCGC	1 cut(s)	127
AsuHPI	GGTGA	2 cut(s)	67, 236
BaeGI	GKGCMC	1 cut(s)	141
BanI	GGYRCC	1 cut(s)	284
BauI	CACGAG	1 cut(s)	279
BbsI	GAAGAC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	469
BbvI	GCAGC	2 cut(s)	139, 160
BclI	TGATCA	1 cut(s)	102
BfaI	CTAG	2 cut(s)	209, 329
BisI	GCNGC	4 cut(s)	153, 174, 297, 477
BlsI	GCNGC	4 cut(s)	154, 175, 298, 478
BmiI	GGNNCC	2 cut(s)	121, 286
BpiI	GAAGAC	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	372
BsaJI	CCNNGG	3 cut(s)	183, 297, 440
Bse1I	ACTGG	1 cut(s)	407
Bse3DI	GCAATG	3 cut(s)	162, 183, 354
BseDI	CCNNGG	3 cut(s)	183, 297, 440
BseMI	GCAATG	3 cut(s)	162, 183, 354
BseNI	ACTGG	1 cut(s)	407
BseSI	GKGCMC	1 cut(s)	141
BseX3I	CGGCCG	1 cut(s)	474
BseXI	GCAGC	2 cut(s)	139, 160
Bsh1236I	CGCG	4 cut(s)	125, 146, 167, 299
Bsh1285I	CGRYCG	1 cut(s)	477
BshFI	GGCC	2 cut(s)	374, 476
BshNI	GGYRCC	1 cut(s)	284
BsiEI	CGRYCG	1 cut(s)	477
BsiHKAI	GWGCWC	1 cut(s)	469
BsiSI	CCGG	1 cut(s)	473
BslFI	GGGAC	1 cut(s)	407
BsmFI	GGGAC	1 cut(s)	407
BsnI	GGCC	2 cut(s)	374, 476
Bsp1286I	GDGCHC	2 cut(s)	141, 469
Bsp143I	GATC	2 cut(s)	102, 403
BspACI	CCGC	5 cut(s)	123, 243, 297, 299, 477
BspANI	GGCC	2 cut(s)	374, 476
BspFNI	CGCG	4 cut(s)	125, 146, 167, 299
BspHI	TCATGA	1 cut(s)	99
BspLI	GGNNCC	2 cut(s)	121, 286
BspPI	GGATC	1 cut(s)	398
BspT107I	GGYRCC	1 cut(s)	284
BsrBI	CCGCTC	1 cut(s)	479
BsrDI	GCAATG	3 cut(s)	162, 183, 354
BsrI	ACTGG	1 cut(s)	407
BssECI	CCNNGG	3 cut(s)	183, 297, 440
BssMI	GATC	2 cut(s)	102, 403
BssSI	CACGAG	1 cut(s)	279
BssT1I	CCWWGG	1 cut(s)	440
Bst2BI	CACGAG	1 cut(s)	279
Bst4CI	ACNGT	2 cut(s)	187, 421
BstC8I	GCNNGC	2 cut(s)	49, 311
BstDSI	CCRYGG	2 cut(s)	183, 297
BstFNI	CGCG	4 cut(s)	125, 146, 167, 299
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	2 cut(s)	105, 406
BstMBI	GATC	2 cut(s)	102, 403
BstMCI	CGRYCG	1 cut(s)	477
BstMWI	GCNNNNNNNGC	4 cut(s)	152, 173, 293, 473
BstNSI	RCATGY	1 cut(s)	313
BstSLI	GKGCMC	1 cut(s)	141
BstUI	CGCG	4 cut(s)	125, 146, 167, 299
BstV1I	GCAGC	2 cut(s)	139, 160
BstV2I	GAAGAC	1 cut(s)	33
BstZI	CGGCCG	1 cut(s)	474
BsuRI	GGCC	2 cut(s)	374, 476
BtgI	CCRYGG	2 cut(s)	183, 297
Cac8I	GCNNGC	2 cut(s)	49, 311
CciI	TCATGA	1 cut(s)	99
CfoI	GCGC	1 cut(s)	127
Cfr42I	CCGCGG	1 cut(s)	300
CviAII	CATG	4 cut(s)	6, 85, 100, 310
CviJI	RGCY	8 cut(s)	47, 51, 152, 173, 208, 374, 392, 476
CviKI_1	RGCY	8 cut(s)	47, 51, 152, 173, 208, 374, 392, 476
DpnI	GATC	2 cut(s)	104, 405
DpnII	GATC	2 cut(s)	102, 403
EaeI	YGGCCR	1 cut(s)	474
EagI	CGGCCG	1 cut(s)	474
EciI	GGCGGA	1 cut(s)	232
EclXI	CGGCCG	1 cut(s)	474
Eco130I	CCWWGG	1 cut(s)	440
Eco52I	CGGCCG	1 cut(s)	474
EcoRI	GAATTC	1 cut(s)	324
EcoT14I	CCWWGG	1 cut(s)	440
ErhI	CCWWGG	1 cut(s)	440
FaeI	CATG	4 cut(s)	9, 88, 103, 313
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	4 cut(s)	5, 84, 99, 309
FauNDI	CATATG	1 cut(s)	107
FbaI	TGATCA	1 cut(s)	102
Fnu4HI	GCNGC	4 cut(s)	153, 174, 297, 477
Fsp4HI	GCNGC	4 cut(s)	153, 174, 297, 477
FspBI	CTAG	2 cut(s)	209, 329
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	4 cut(s)	153, 174, 297, 477
GsuI	CTGGAG	1 cut(s)	372
HaeIII	GGCC	2 cut(s)	374, 476
HapII	CCGG	1 cut(s)	473
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	4 cut(s)	9, 88, 103, 313
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HinfI	GANTC	3 cut(s)	88, 277, 447
HpaII	CCGG	1 cut(s)	473
HphI	GGTGA	2 cut(s)	67, 236
Hpy188I	TCNGA	1 cut(s)	259
Hpy188III	TCNNGA	1 cut(s)	100
HpyAV	CCTTC	2 cut(s)	142, 163
HpyCH4III	ACNGT	2 cut(s)	187, 421
HpyCH4V	TGCA	4 cut(s)	155, 176, 313, 347
HpyF10VI	GCNNNNNNNGC	4 cut(s)	152, 173, 293, 473
Hsp92II	CATG	4 cut(s)	9, 88, 103, 313
HspAI	GCGC	1 cut(s)	125
Ksp22I	TGATCA	1 cut(s)	102
KspI	CCGCGG	1 cut(s)	300
Kzo9I	GATC	2 cut(s)	102, 403
LmnI	GCTCC	3 cut(s)	116, 391, 464
LpnPI	CCDG	9 cut(s)	14, 33, 190, 299, 318, 402, 420, 438, 486
Lsp1109I	GCAGC	2 cut(s)	139, 160
MaeI	CTAG	2 cut(s)	209, 329
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	104, 405
MbiI	CCGCTC	1 cut(s)	479
MboI	GATC	2 cut(s)	102, 403
MboII	GAAGA	2 cut(s)	33, 187
MhlI	GDGCHC	2 cut(s)	141, 469
MluCI	AATT	2 cut(s)	22, 324
MlyI	GAGTC	2 cut(s)	82, 271
MmeI	TCCRAC	1 cut(s)	442
MnlI	CCTC	1 cut(s)	246
MslI	CAYNNNNRTG	2 cut(s)	251, 455
MspA1I	CMGCKG	1 cut(s)	299
MspI	CCGG	1 cut(s)	473
MvnI	CGCG	4 cut(s)	125, 146, 167, 299
MwoI	GCNNNNNNNGC	4 cut(s)	152, 173, 293, 473
NdeI	CATATG	1 cut(s)	107
NdeII	GATC	2 cut(s)	102, 403
NlaIII	CATG	4 cut(s)	9, 88, 103, 313
NlaIV	GGNNCC	2 cut(s)	121, 286
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	313
PaeI	GCATGC	1 cut(s)	313
PagI	TCATGA	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	447
PkrI	GCNGC	4 cut(s)	154, 175, 298, 478
PleI	GAGTC	2 cut(s)	82, 271
PpsI	GAGTC	2 cut(s)	82, 271
PspN4I	GGNNCC	2 cut(s)	121, 286
RseI	CAYNNNNRTG	2 cut(s)	251, 455
SacII	CCGCGG	1 cut(s)	300
SatI	GCNGC	4 cut(s)	153, 174, 297, 477
Sau3AI	GATC	2 cut(s)	102, 403
SchI	GAGTC	2 cut(s)	82, 271
SduI	GDGCHC	2 cut(s)	141, 469
SetI	ASST	1 cut(s)	394
Sfr303I	CCGCGG	1 cut(s)	300
SgrBI	CCGCGG	1 cut(s)	300
SmiMI	CAYNNNNRTG	2 cut(s)	251, 455
SphI	GCATGC	1 cut(s)	313
Sse9I	AATT	2 cut(s)	22, 324
SsiI	CCGC	5 cut(s)	123, 243, 297, 299, 477
SspMI	CTAG	2 cut(s)	209, 329
StyI	CCWWGG	1 cut(s)	440
TaaI	ACNGT	2 cut(s)	187, 421
TasI	AATT	2 cut(s)	22, 324
TauI	GCSGC	2 cut(s)	299, 479
TfiI	GAWTC	1 cut(s)	447
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	152, 173
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	411
XapI	RAATTY	1 cut(s)	324
XceI	RCATGY	1 cut(s)	313
XspI	CTAG	2 cut(s)	209, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.