Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

20740665 .. 20741222

Gene Structure 558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGACGTTTTCAGATTTCTTGCATTTTCCTATTGGTGGTCCTGACACATTCATTCTCACCCGCCAAGCAGCCTCCGCCGCCAACCCCCGATTTCGCACCTTCTCCTTTCTCACCAGAATGTCATCCCTTCACGTTTCCCAAAACACCATTTCCCAGCCGCCTCTCAATCTCCGCCGTCGATGCATCCCCAATTTAGGCAGAGAAGTCCGATTAATCAAGGGCCGGAGGCCGTCCGCGGCTTGCCTGAGCGTGGACGTGGAAGCACCGGATGCGGCCTCCAAATTAGGGATTTTGAAGAGCAAGGAGGTAATGGAGACGGAGGCGAAGGTCCTGCTACAGACCTACGCGAGGACTCCAGTGGTGCTCACCAGTGGCAATGGTTGTAAATTATACGATACCGAGGGGCGCGAGTATTTGGACCTGAGCTCGGGGATTGCGGTGAACGCGCTCGGCCATGGCGACGAGGACTGGCTGAAGGCGGTGGTTGATCAGGCCGGAACGCTTACCCACGTCAGCAATCTCTACTATTCAATCCCGCAGGTTTGCCCTTTATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_3

Protein Analysis

186

Amino Acids

20.27

Weight (kDa)

8.73

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_3	PF00202	117 - 175	1.3e-11	Aminotransferase class-III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	529
AccII	CGCG	4 cut(s)	236, 347, 408, 446
AcoI	YGGCCR	1 cut(s)	451
AcuI	CTGAAG	1 cut(s)	494
AfiI	CCNNNNNNNGG	6 cut(s)	35, 194, 250, 285, 348, 427
AgsI	TTSAA	2 cut(s)	295, 531
AjiI	CACGTC	2 cut(s)	256, 511
AluBI	AGCT	1 cut(s)	426
AluI	AGCT	1 cut(s)	426
Alw21I	GWGCWC	2 cut(s)	366, 428
Alw26I	GTCTC	1 cut(s)	308
Ama87I	CYCGRG	1 cut(s)	427
AoxI	GGCC	5 cut(s)	220, 227, 273, 451, 492
ApeKI	GCWGC	1 cut(s)	68
AseI	ATTAAT	1 cut(s)	212
AspLEI	GCGC	2 cut(s)	408, 448
AspS9I	GGNCC	4 cut(s)	38, 220, 328, 418
AsuHPI	GGTGA	4 cut(s)	49, 103, 358, 451
AvaI	CYCGRG	1 cut(s)	427
AvaII	GGWCC	3 cut(s)	38, 328, 418
BanII	GRGCYC	1 cut(s)	428
Bbv12I	GWGCWC	2 cut(s)	366, 428
BbvI	GCAGC	1 cut(s)	80
BceAI	ACGGC	2 cut(s)	159, 214
BcgI	CGANNNNNNTGC	2 cut(s)	313, 347
BclI	TGATCA	1 cut(s)	487
BcoDI	GTCTC	1 cut(s)	308
BfmI	CTRYAG	1 cut(s)	335
BfuAI	ACCTGC	1 cut(s)	529
BisI	GCNGC	5 cut(s)	69, 78, 158, 237, 273
BlsI	GCNGC	5 cut(s)	70, 79, 159, 238, 274
Bme18I	GGWCC	3 cut(s)	38, 328, 418
BmeT110I	CYCGRG	1 cut(s)	427
BmgBI	CACGTC	2 cut(s)	256, 511
BmgT120I	GGNCC	4 cut(s)	38, 220, 328, 418
BmsI	GCATC	3 cut(s)	170, 192, 259
BpmI	CTGGAG	1 cut(s)	339
Bpu10I	CCTNAGC	2 cut(s)	245, 422
BsaJI	CCNNGG	3 cut(s)	234, 399, 454
BsaWI	WCCGGW	1 cut(s)	265
Bsc4I	CCNNNNNNNGG	6 cut(s)	35, 194, 250, 285, 348, 427
Bse1I	ACTGG	3 cut(s)	356, 369, 473
Bse3DI	GCAATG	1 cut(s)	382
BseDI	CCNNGG	3 cut(s)	234, 399, 454
BseGI	GGATG	3 cut(s)	122, 183, 274
BseLI	CCNNNNNNNGG	6 cut(s)	35, 194, 250, 285, 348, 427
BseMI	GCAATG	1 cut(s)	382
BseMII	CTCAG	2 cut(s)	236, 413
BseNI	ACTGG	3 cut(s)	356, 369, 473
BseXI	GCAGC	1 cut(s)	80
BseYI	CCCAGC	1 cut(s)	153
Bsh1236I	CGCG	4 cut(s)	236, 347, 408, 446
BshFI	GGCC	5 cut(s)	222, 229, 275, 453, 494
BsiHKAI	GWGCWC	2 cut(s)	366, 428
BsiHKCI	CYCGRG	1 cut(s)	427
BsiSI	CCGG	3 cut(s)	223, 266, 495
BslI	CCNNNNNNNGG	6 cut(s)	35, 194, 250, 285, 348, 427
BsmAI	GTCTC	1 cut(s)	308
BsmBI	CGTCTC	1 cut(s)	308
BsnI	GGCC	5 cut(s)	222, 229, 275, 453, 494
BsoBI	CYCGRG	1 cut(s)	427
Bsp1286I	GDGCHC	2 cut(s)	366, 428
Bsp143I	GATC	1 cut(s)	487
Bsp19I	CCATGG	1 cut(s)	454
BspANI	GGCC	5 cut(s)	222, 229, 275, 453, 494
BspCNI	CTCAG	2 cut(s)	237, 414
BspFNI	CGCG	4 cut(s)	236, 347, 408, 446
BspMI	ACCTGC	1 cut(s)	529
BspQI	GCTCTTC	1 cut(s)	290
BsrDI	GCAATG	1 cut(s)	382
BsrI	ACTGG	3 cut(s)	356, 369, 473
BssECI	CCNNGG	3 cut(s)	234, 399, 454
BssMI	GATC	1 cut(s)	487
BssT1I	CCWWGG	1 cut(s)	454
Bst6I	CTCTTC	1 cut(s)	290
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	2 cut(s)	245, 422
BstDSI	CCRYGG	2 cut(s)	234, 454
BstENI	CCTNNNNNAGG	1 cut(s)	346
BstF5I	GGATG	3 cut(s)	122, 183, 274
BstFNI	CGCG	4 cut(s)	236, 347, 408, 446
BstHHI	GCGC	2 cut(s)	408, 448
BstKTI	GATC	1 cut(s)	490
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	1 cut(s)	487
BstMWI	GCNNNNNNNGC	5 cut(s)	74, 77, 180, 269, 443
BstSFI	CTRYAG	1 cut(s)	335
BstUI	CGCG	4 cut(s)	236, 347, 408, 446
BstV1I	GCAGC	1 cut(s)	80
BsuRI	GGCC	5 cut(s)	222, 229, 275, 453, 494
BtgI	CCRYGG	2 cut(s)	234, 454
BtrI	CACGTC	2 cut(s)	256, 511
BtsCI	GGATG	3 cut(s)	122, 183, 274
BtsIMutI	CAGTG	2 cut(s)	363, 376
BveI	ACCTGC	1 cut(s)	529
Cac8I	GCNNGC	1 cut(s)	241
CfoI	GCGC	2 cut(s)	408, 448
Cfr13I	GGNCC	4 cut(s)	38, 220, 328, 418
Cfr42I	CCGCGG	1 cut(s)	237
CviAII	CATG	1 cut(s)	455
DdeI	CTNAG	2 cut(s)	245, 422
DpnI	GATC	1 cut(s)	489
DpnII	GATC	1 cut(s)	487
EaeI	YGGCCR	1 cut(s)	451
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
EciI	GGCGGA	2 cut(s)	64, 161
Ecl136II	GAGCTC	1 cut(s)	426
Eco130I	CCWWGG	1 cut(s)	454
Eco24I	GRGCYC	1 cut(s)	428
Eco47I	GGWCC	3 cut(s)	38, 328, 418
Eco53kI	GAGCTC	1 cut(s)	426
Eco57I	CTGAAG	1 cut(s)	494
Eco88I	CYCGRG	1 cut(s)	427
EcoICRI	GAGCTC	1 cut(s)	426
EcoNI	CCTNNNNNAGG	1 cut(s)	346
EcoO109I	RGGNCCY	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	454
EcoT22I	ATGCAT	1 cut(s)	185
EcoT38I	GRGCYC	1 cut(s)	428
ErhI	CCWWGG	1 cut(s)	454
Esp3I	CGTCTC	1 cut(s)	308
FaeI	CATG	1 cut(s)	458
FaiI	YATR	2 cut(s)	391, 456
FatI	CATG	1 cut(s)	454
FauI	CCCGC	2 cut(s)	68, 543
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	5 cut(s)	69, 78, 158, 237, 273
FokI	GGATG	3 cut(s)	109, 170, 281
FriOI	GRGCYC	1 cut(s)	428
Fsp4HI	GCNGC	5 cut(s)	69, 78, 158, 237, 273
GlaI	GCGC	2 cut(s)	407, 447
GluI	GCNGC	5 cut(s)	69, 78, 158, 237, 273
GsaI	CCCAGC	1 cut(s)	157
GsuI	CTGGAG	1 cut(s)	339
HaeIII	GGCC	5 cut(s)	222, 229, 275, 453, 494
HapII	CCGG	3 cut(s)	223, 266, 495
HhaI	GCGC	2 cut(s)	408, 448
Hin1II	CATG	1 cut(s)	458
Hin6I	GCGC	2 cut(s)	406, 446
HinP1I	GCGC	2 cut(s)	406, 446
HinfI	GANTC	1 cut(s)	352
HpaII	CCGG	3 cut(s)	223, 266, 495
HphI	GGTGA	4 cut(s)	49, 103, 358, 451
Hpy166II	GTNNAC	2 cut(s)	253, 442
Hpy188I	TCNGA	2 cut(s)	13, 209
Hpy188III	TCNNGA	1 cut(s)	41
Hpy8I	GTNNAC	2 cut(s)	253, 442
Hpy99I	CGWCG	2 cut(s)	180, 464
HpyAV	CCTTC	4 cut(s)	109, 137, 319, 469
HpyCH4IV	ACGT	4 cut(s)	5, 132, 255, 510
HpyCH4V	TGCA	2 cut(s)	22, 183
HpyF10VI	GCNNNNNNNGC	5 cut(s)	74, 77, 180, 269, 443
HpyF3I	CTNAG	2 cut(s)	245, 422
HpySE526I	ACGT	4 cut(s)	5, 132, 255, 510
Hsp92II	CATG	1 cut(s)	458
HspAI	GCGC	2 cut(s)	406, 446
Ksp22I	TGATCA	1 cut(s)	487
KspI	CCGCGG	1 cut(s)	237
Kzo9I	GATC	1 cut(s)	487
LguI	GCTCTTC	1 cut(s)	290
Lsp1109I	GCAGC	1 cut(s)	80
LweI	GCATC	3 cut(s)	170, 192, 259
MaeII	ACGT	4 cut(s)	5, 132, 255, 510
MalI	GATC	1 cut(s)	489
MboI	GATC	1 cut(s)	487
MboII	GAAGA	1 cut(s)	307
MhlI	GDGCHC	2 cut(s)	366, 428
MluCI	AATT	3 cut(s)	190, 281, 386
MlyI	GAGTC	1 cut(s)	346
MnlI	CCTC	9 cut(s)	82, 171, 219, 286, 298, 313, 342, 394, 457
Mph1103I	ATGCAT	1 cut(s)	185
MseI	TTAA	2 cut(s)	212, 556
MslI	CAYNNNNRTG	1 cut(s)	116
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	3 cut(s)	223, 266, 495
MvnI	CGCG	4 cut(s)	236, 347, 408, 446
MwoI	GCNNNNNNNGC	5 cut(s)	74, 77, 180, 269, 443
NcoI	CCATGG	1 cut(s)	454
NdeII	GATC	1 cut(s)	487
NlaIII	CATG	1 cut(s)	458
NmeAIII	GCCGAG	1 cut(s)	429
NsiI	ATGCAT	1 cut(s)	185
PciSI	GCTCTTC	1 cut(s)	290
PcsI	WCGNNNNNNNCGW	1 cut(s)	456
PkrI	GCNGC	5 cut(s)	70, 79, 159, 238, 274
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
PpuMI	RGGWCCY	1 cut(s)	328
PshBI	ATTAAT	1 cut(s)	212
Psp124BI	GAGCTC	1 cut(s)	428
Psp5II	RGGWCCY	1 cut(s)	328
PspFI	CCCAGC	1 cut(s)	153
PspPI	GGNCC	4 cut(s)	38, 220, 328, 418
PspPPI	RGGWCCY	1 cut(s)	328
RseI	CAYNNNNRTG	1 cut(s)	116
SacI	GAGCTC	1 cut(s)	428
SacII	CCGCGG	1 cut(s)	237
SapI	GCTCTTC	1 cut(s)	290
SaqAI	TTAA	2 cut(s)	212, 556
SatI	GCNGC	5 cut(s)	69, 78, 158, 237, 273
Sau3AI	GATC	1 cut(s)	487
Sau96I	GGNCC	4 cut(s)	38, 220, 328, 418
SchI	GAGTC	1 cut(s)	346
SduI	GDGCHC	2 cut(s)	366, 428
SfaNI	GCATC	3 cut(s)	170, 192, 259
SfcI	CTRYAG	1 cut(s)	335
Sfr303I	CCGCGG	1 cut(s)	237
SgrBI	CCGCGG	1 cut(s)	237
SinI	GGWCC	3 cut(s)	38, 328, 418
SmiMI	CAYNNNNRTG	1 cut(s)	116
Sse9I	AATT	3 cut(s)	190, 281, 386
SstI	GAGCTC	1 cut(s)	428
StyI	CCWWGG	1 cut(s)	454
TaiI	ACGT	4 cut(s)	8, 135, 258, 513
TaqI	TCGA	1 cut(s)	178
TasI	AATT	3 cut(s)	190, 281, 386
TauI	GCSGC	4 cut(s)	80, 160, 239, 275
Tru1I	TTAA	2 cut(s)	212, 556
Tru9I	TTAA	2 cut(s)	212, 556
TscAI	CASTG	2 cut(s)	363, 376
TseI	GCWGC	1 cut(s)	68
TspDTI	ATGAA	1 cut(s)	40
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	2 cut(s)	363, 376
VpaK11BI	GGWCC	3 cut(s)	38, 328, 418
VspI	ATTAAT	1 cut(s)	212
XagI	CCTNNNNNAGG	1 cut(s)	346
Zsp2I	ATGCAT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.