pycom10g17950

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
N/A
Physical Location & Seq
Reverse (-)
21091924 .. 21092283
360 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 360 bp
ATGAGATCAAGTCTTGCTAATATTAGTCTTGAATCAAGTTCTGTCGTTTTCGAGCTTTTCTTGAAACGTGTCTCCGATGTTATGTGCGTGGCTGAGAGACATGTCTCCGGGCAAGACAATGTGAACCTCCACAAAATAGTTGCAGTCAAAAGTGTGCTCTCACTGTCTCAATGTGCTCTCCTTGGCATGGTTCCGTATCAGACATGTCAATTTTGGCAAGTACACTGCTGGTGCTGTCTTCCCAATCAGGGACCATACGTGCCCAATTTCCCATTGTGTACAGTGCAATCTGCATCCCATCGTTTTCAAATTTCAATTACACTTGTTGCCTTAAAAGAGTTTCGGATGAAGTACCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.45

Weight (kDa)

8.77

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 309
AfaI GTAC 3 cut(s) 222, 280, 353
AfiI CCNNNNNNNGG 2 cut(s) 187, 248
AflIII ACRYGT 3 cut(s) 67, 100, 203
AgsI TTSAA 4 cut(s) 32, 64, 308, 315
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
Alw21I GWGCWC 2 cut(s) 159, 178
Alw26I GTCTC 4 cut(s) 76, 91, 109, 171
ApoI RAATTY 1 cut(s) 309
AspS9I GGNCC 1 cut(s) 251
AsuC2I CCSGG 1 cut(s) 109
AvaII GGWCC 1 cut(s) 251
BaeGI GKGCMC 1 cut(s) 264
BbsI GAAGAC 1 cut(s) 230
Bbv12I GWGCWC 2 cut(s) 159, 178
BccI CCATC 1 cut(s) 306
BcnI CCSGG 1 cut(s) 109
BcoDI GTCTC 4 cut(s) 76, 91, 109, 171
Bme1390I CCNGG 1 cut(s) 109
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 2 cut(s) 192, 252
BmrFI CCNGG 1 cut(s) 109
BmsI GCATC 1 cut(s) 302
BpiI GAAGAC 1 cut(s) 230
BpuMI CCSGG 1 cut(s) 109
BsaAI YACGTR 1 cut(s) 259
BsaJI CCNNGG 1 cut(s) 181
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 248
BseDI CCNNGG 1 cut(s) 181
BseGI GGATG 2 cut(s) 293, 351
BseLI CCNNNNNNNGG 2 cut(s) 187, 248
BseMII CTCAG 1 cut(s) 84
BseSI GKGCMC 1 cut(s) 264
BsiHKAI GWGCWC 2 cut(s) 159, 178
BsiSI CCGG 1 cut(s) 108
BslFI GGGAC 1 cut(s) 264
BslI CCNNNNNNNGG 2 cut(s) 187, 248
BsmAI GTCTC 4 cut(s) 76, 91, 109, 171
BsmFI GGGAC 1 cut(s) 264
Bsp1286I GDGCHC 3 cut(s) 159, 178, 264
Bsp1407I TGTACA 1 cut(s) 278
Bsp143I GATC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 85
BspLI GGNNCC 2 cut(s) 192, 252
BsrGI TGTACA 1 cut(s) 278
BssECI CCNNGG 1 cut(s) 181
BssMI GATC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 181
Bst4CI ACNGT 2 cut(s) 165, 283
BstAUI TGTACA 1 cut(s) 278
BstBAI YACGTR 1 cut(s) 259
BstDEI CTNAG 1 cut(s) 93
BstF5I GGATG 2 cut(s) 293, 351
BstKTI GATC 1 cut(s) 8
BstMAI GTCTC 4 cut(s) 76, 91, 109, 171
BstMBI GATC 1 cut(s) 5
BstNSI RCATGY 2 cut(s) 104, 207
BstSCI CCNGG 1 cut(s) 107
BstSLI GKGCMC 1 cut(s) 264
BstV2I GAAGAC 1 cut(s) 230
BtsCI GGATG 2 cut(s) 293, 351
BtsI GCAGTG 1 cut(s) 223
BtsIMutI CAGTG 3 cut(s) 161, 223, 288
Cfr13I GGNCC 1 cut(s) 251
Csp6I GTAC 3 cut(s) 221, 279, 352
CviAII CATG 3 cut(s) 101, 187, 204
CviJI RGCY 2 cut(s) 55, 92
CviKI_1 RGCY 2 cut(s) 55, 92
CviQI GTAC 3 cut(s) 221, 279, 352
DdeI CTNAG 1 cut(s) 93
DpnI GATC 1 cut(s) 7
DpnII GATC 1 cut(s) 5
Eco130I CCWWGG 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 251
EcoT14I CCWWGG 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 181
FaeI CATG 3 cut(s) 104, 190, 207
FaiI YATR 5 cut(s) 83, 102, 188, 205, 256
FaqI GGGAC 1 cut(s) 264
FatI CATG 3 cut(s) 100, 186, 203
FokI GGATG 1 cut(s) 280
HapII CCGG 1 cut(s) 108
Hin1II CATG 3 cut(s) 104, 190, 207
HinfI GANTC 1 cut(s) 32
HpaII CCGG 1 cut(s) 108
Hpy166II GTNNAC 3 cut(s) 124, 223, 279
Hpy188I TCNGA 3 cut(s) 76, 201, 345
Hpy188III TCNNGA 2 cut(s) 29, 61
Hpy8I GTNNAC 3 cut(s) 124, 223, 279
HpyCH4III ACNGT 2 cut(s) 165, 283
HpyCH4IV ACGT 2 cut(s) 67, 258
HpyCH4V TGCA 3 cut(s) 143, 286, 293
HpyF3I CTNAG 1 cut(s) 93
HpySE526I ACGT 2 cut(s) 67, 258
Hsp92II CATG 3 cut(s) 104, 190, 207
Kzo9I GATC 1 cut(s) 5
LpnPI CCDG 3 cut(s) 121, 214, 233
LweI GCATC 1 cut(s) 302
MaeII ACGT 2 cut(s) 67, 258
MalI GATC 1 cut(s) 7
MboI GATC 1 cut(s) 5
MboII GAAGA 1 cut(s) 230
MhlI GDGCHC 3 cut(s) 159, 178, 264
MluCI AATT 4 cut(s) 209, 265, 309, 315
MnlI CCTC 1 cut(s) 137
MseI TTAA 1 cut(s) 332
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 1 cut(s) 109
NciI CCSGG 1 cut(s) 109
NdeII GATC 1 cut(s) 5
NlaIII CATG 3 cut(s) 104, 190, 207
NlaIV GGNNCC 2 cut(s) 192, 252
NspI RCATGY 2 cut(s) 104, 207
PciI ACATGT 2 cut(s) 100, 203
PfeI GAWTC 1 cut(s) 32
Ppu21I YACGTR 1 cut(s) 259
PscI ACATGT 2 cut(s) 100, 203
PspN4I GGNNCC 2 cut(s) 192, 252
PspPI GGNCC 1 cut(s) 251
RsaI GTAC 3 cut(s) 222, 280, 353
RsaNI GTAC 3 cut(s) 221, 279, 352
SaqAI TTAA 1 cut(s) 332
Sau3AI GATC 1 cut(s) 5
Sau96I GGNCC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 109
SduI GDGCHC 3 cut(s) 159, 178, 264
SetI ASST 5 cut(s) 57, 70, 129, 261, 357
SfaNI GCATC 1 cut(s) 302
SinI GGWCC 1 cut(s) 251
Sse9I AATT 4 cut(s) 209, 265, 309, 315
SspI AATATT 1 cut(s) 22
StyD4I CCNGG 1 cut(s) 107
StyI CCWWGG 1 cut(s) 181
TaaI ACNGT 2 cut(s) 165, 283
TaiI ACGT 2 cut(s) 70, 261
TaqI TCGA 1 cut(s) 51
TasI AATT 4 cut(s) 209, 265, 309, 315
TatI WGTACW 2 cut(s) 220, 278
TfiI GAWTC 1 cut(s) 32
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TscAI CASTG 3 cut(s) 168, 230, 288
TspGWI ACGGA 1 cut(s) 183
TspRI CASTG 3 cut(s) 168, 230, 288
VpaK11BI GGWCC 1 cut(s) 251
XapI RAATTY 1 cut(s) 309
XceI RCATGY 2 cut(s) 104, 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.